EBI Dbfetch

ID   AF367293; SV 1; linear; mRNA; STD; PLN; 1902 BP.
XX
AC   AF367293;
XX
DT   31-MAY-2001 (Rel. 67, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE   Arabidopsis thaliana AT3g23920/F14O13_11 mRNA, complete cds.
XX
KW   FLI_CDNA.
XX
OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-1902
RA   Shinn P., Chen H., Cheuk R., Kim C.J., Meyers M.C., Banh J., Bowser L.,
RA   Carninci P., Chung M.K., Goldsmith A.D., Hayashizaki Y., Ishida J.,
RA   Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B., Lee J.M., Lin J.,
RA   Liu S.X., Miranda M., Narusaka M., Nguyen M., Palm C.J., Pham P.K.,
RA   Quach H.L., Sakano H., Sakurai T., Satou M., Seki M., Southwick A.,
RA   Toriumi M., Yamada K., Yu G., Shinozaki K., Davis R.W., Theologis A.,
RA   Ecker J.R.;
RT   "Arabidopsis cDNA clones";
RL   Unpublished.
XX
RN   [2]
RP   1-1902
RA   Shinn P., Chen H., Cheuk R., Kim C.J., Meyers M.C., Banh J., Bowser L.,
RA   Carninci P., Chung M.K., Goldsmith A.D., Hayashizaki Y., Ishida J.,
RA   Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B., Lee J.M., Lin J.,
RA   Liu S.X., Miranda M., Narusaka M., Nguyen M., Palm C.J., Pham P.K.,
RA   Quach H.L., Sakano H., Sakurai T., Satou M., Seki M., Southwick A.,
RA   Toriumi M., Yamada K., Yu G., Shinozaki K., Davis R.W., Theologis A.,
RA   Ecker J.R.;
RT   ;
RL   Submitted (30-MAR-2001) to the EMBL/GenBank/DDBJ databases.
RL   Salk Institute Genomic Analysis Laboratory (SIGnAL), Plant Biology
RL   Laboratory, The Salk Institute for Biological Studies, 10010 N. Torrey
RL   Pines Road, La Jolla, CA 92037, USA
XX
CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis Full-Length cDNA') :  Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P.,  Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members carried out the
CC   sequencing and annotation of the RAFL cDNAs: Shinn,P., Chen,H.,
CC   Cheuk,R., Kim,C.J., Koesema,E., Meyers,M.C., Tracy,S.E., Banh,J.
CC   Bowser,L., Chung,M.K., Goldsmith,A.D., Jones,T., Karlin-Neumann,G.,
CC   Lam,B., Lee,J.M., Lin,J., Liu,S.X., Miranda,M., Nguyen,M.,
CC   Palm,C.J., Pham,P.K., Quach,H.L., Sakano,H., Southwick,A.,
CC   Tang,C.C., Toriumi,M., Yamada,K., Yu,G., Davis,R.W., Theologis,A.,
CC   and Ecker,J.R.
CC   Shinn,P. (SSP/Salk) and Seki,M. (RIKEN GSC) contributed equally to
CC   this work.  Shinozaki,K. (RIKEN GSC) and Ecker,J.R. (SSP/Salk)
CC   contributed equally to this work as PIs.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1902
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="3"
FT                   /mol_type="mRNA"
FT                   /clone="RAFL09-13-P15(R12240)"
FT                   /note="ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   5'UTR           1..100
FT   CDS             101..1828
FT                   /codon_start=1
FT                   /product="AT3g23920/F14O13_11"
FT                   /note="beta-amylase, putative"
FT                   /db_xref="GOA:Q9LIR6"
FT                   /db_xref="HSSP:1B1Y"
FT                   /db_xref="InterPro:IPR001371"
FT                   /db_xref="InterPro:IPR001554"
FT                   /db_xref="InterPro:IPR013781"
FT                   /db_xref="InterPro:IPR017853"
FT                   /db_xref="InterPro:IPR018238"
FT                   /db_xref="UniProtKB/TrEMBL:Q9LIR6"
FT                   /protein_id="AAK56281.1"
FT                   /translation="MALNLSHQLGVLAGTPIKSGEMTDSSLLSISPPSARMMTPKAMNR
FT                   NYKAHGTDPSPPMSPILGATRADLSVACKAFAVENGIGTIEEQRTYREGGIGGKKEGGG
FT                   GVPVFVMMPLDSVTMGNTVNRRKAMKASLQALKSAGVEGIMIDVWWGLVEKESPGTYNW
FT                   GGYNELLELAKKLGLKVQAVMSFHQCGGNVGDSVTIPLPQWVVEEVDKDPDLAYTDQWG
FT                   RRNHEYISLGADTLPVLKGRTPVQCYADFMRAFRDNFKHLLGETIVEIQVGMGPAGELR
FT                   YPSYPEQEGTWKFPGIGAFQCYDKYSLSSLKAAAETYGKPEWGSTGPTDAGHYNNWPED
FT                   TQFFKKEGGGWNSEYGDFFLSWYSQMLLDHGERILSSAKSIFENMGVKISVKIAGIHWH
FT                   YGTRSHAPELTAGYYNTRFRDGYLPIAQMLARHNAIFNFTCIEMRDHEQPQDALCAPEK
FT                   LVNQVALATLAAEVPLAGENALPRYDDYAHEQILKASALNLDQNNEGEPREMCAFTYLR
FT                   MNPELFQADNWGKFVAFVKKMGEGRDSHRCREEVEREAEHFVHVTQPLVQEAAVALTH"
FT   3'UTR           1829..1902
XX
SQ   Sequence 1902 BP; 537 A; 384 C; 514 G; 467 T; 0 other;
     gacacaaaac ttccgatttc aaaaaaacaa tttgaaattt gtcaaaagga atattctgac        60
     gatcgattct tgattcgttt tctcgcgtat agagagaaaa atggcgctta atttatcgca       120
     tcagctagga gtactcgccg gaactccgat caaatccggt gaaatgacag attcatcgtt       180
     gttatcaatt tcaccaccat cggcgagaat gatgacacct aaagcaatga atcgaaacta       240
     caaggctcac ggaacagatc catcaccgcc gatgagtcca attttaggtg cgacacgtgc       300
     ggatctgtcg gtggcgtgta aagctttcgc ggtggagaat ggaatcggga ccattgaaga       360
     acagagaacg tatagagaag gagggattgg tggaaagaaa gaaggaggag gaggtgttcc       420
     tgtgtttgtg atgatgccgc ttgatagtgt taccatgggg aacacggtga atcgaagaaa       480
     ggcgatgaaa gcgagtttgc aagcgttgaa gagtgctggt gttgaaggga ttatgattga       540
     tgtgtggtgg ggtttggttg agaaggaatc tcctggaact tataattggg gaggttataa       600
     tgaattgctt gagctggcta agaagcttgg tcttaaggtt caagctgtta tgtcgtttca       660
     tcagtgtggt ggcaacgttg gtgactctgt cactattcct ctgcctcagt gggttgttga       720
     agaggttgac aaggatccag accttgcata cactgatcag tggggaagaa ggaaccatga       780
     gtatatatca cttggcgctg atacactccc tgttctcaaa ggtagaacac ctgtgcaatg       840
     ctatgcggat ttcatgcgtg cttttagaga caacttcaag catcttcttg gagagaccat       900
     tgtggaaatc caagtgggaa tgggacctgc aggagagctg cgttaccctt cgtaccccga       960
     gcaagaaggg acatggaagt tcccagggat tggagccttc cagtgctatg ataagtactc      1020
     gttaagcagc ttgaaagcag cagctgagac ttatgggaag ccagagtggg gcagtactgg      1080
     cccaaccgat gctggtcact acaataactg gccagaagac acccagttct tcaaaaaaga      1140
     aggtggtggt tggaactcag agtatggaga tttcttcctc tcatggtact cccagatgct      1200
     gttggatcac ggcgagcgga tcctatcctc agccaaatca atattcgaaa acatgggtgt      1260
     caaaatatcg gtcaaaatcg ctggaatcca ctggcactac gggacccgct ctcacgcgcc      1320
     tgagctcaca gcagggtact acaacacaag gttcagagac gggtacctcc cgatcgccca      1380
     aatgttagcc agacacaatg ccatattcaa cttcacatgt atcgagatga gggatcacga      1440
     acagcctcaa gacgcacttt gtgcaccaga gaagctagtt aaccaagttg ctctagccac      1500
     tctagccgca gaagttcctc tagctggtga aaacgcattg cctaggtacg acgactatgc      1560
     acacgagcag attctcaagg cctccgcgct gaaccttgat caaaacaatg agggagaacc      1620
     tcgagagatg tgtgcattta cttacctaag gatgaatccg gagttgtttc aggcggataa      1680
     ctggggaaaa ttcgtagcgt ttgtgaagaa aatgggtgaa gggagagact cacatagatg      1740
     tcgggaagaa gttgagcgtg aggctgagca ttttgtgcac gttactcagc cgctggttca      1800
     agaagctgca gtggctctca ctcactagag agatagattg tggcatggtt ctatggttta      1860
     tgtttgtatg cgattataat gaaatggtta tatgacaatg cc                         1902
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