EBI Dbfetch

ID   AF361580; SV 1; linear; mRNA; STD; PLN; 1429 BP.
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AC   AF361580;
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DT   12-APR-2001 (Rel. 67, Created)
DT   08-FEB-2002 (Rel. 70, Last updated, Version 3)
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DE   Arabidopsis thaliana AT3g03690/T12J13_3 mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1429
RA   Shinn P., Chen H., Cheuk R., Kim C.J., Banh J., Bowser L., Carninci P.,
RA   Chung M.K., Goldsmith A.D., Hayashizaki Y., Ishida J., Jones T., Kamiya A.,
RA   Karlin-Neumann G., Kawai J., Lam B., Lee J.M., Lin J., Liu S.X.,
RA   Miranda M., Narusaka M., Nguyen M., Palm C.J., Pham P.K., Quach H.L.,
RA   Sakano H., Sakurai T., Satou M., Seki M., Southwick A., Toriumi M.,
RA   Yamada K., Yu G., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
RT   "Arabidopsis cDNA clones";
RL   Unpublished.
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RN   [2]
RP   1-1429
RA   Shinn P., Chen H., Cheuk R., Kim C.J., Banh J., Bowser L., Carninci P.,
RA   Chung M.K., Goldsmith A.D., Hayashizaki Y., Ishida J., Jones T., Kamiya A.,
RA   Karlin-Neumann G., Kawai J., Lam B., Lee J.M., Lin J., Liu S.X.,
RA   Miranda M., Narusaka M., Nguyen M., Palm C.J., Pham P.K., Quach H.L.,
RA   Sakano H., Sakurai T., Satou M., Seki M., Southwick A., Toriumi M.,
RA   Yamada K., Yu G., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
RT   ;
RL   Submitted (15-MAR-2001) to the EMBL/GenBank/DDBJ databases.
RL   Salk Institute Genomic Analysis Laboratory (SIGnAL), Plant Biology
RL   Laboratory, The Salk Institute for Biological Studies, 10010 N. Torrey
RL   Pines Road, La Jolla, CA 92037, USA
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CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis Full-Length cDNA') :  Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P.,  Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members carried out the
CC   sequencing and annotation of the RAFL cDNAs: Shinn,P., Chen,H.,
CC   Cheuk,R., Kim,C.J., Koesema,E., Meyers,M.C., Tracy,S.E., Banh,J.
CC   Bowser,L., Chung,M.K., Goldsmith,A.D., Jones,T., Karlin-Neumann,G.,
CC   Lam,B., Lee,J.M., Lin,J., Liu,S.X., Miranda,M., Nguyen,M.,
CC   Palm,C.J., Pham,P.K., Quach,H.L., Sakano,H., Southwick,A.,
CC   Tang,C.C., Toriumi,M., Yamada,K., Yu,G., Davis,R.W., Theologis,A.,
CC   and Ecker,J.R.
CC   Shinn,P. (SSP/Salk) and Seki,M. (RIKEN GSC) contributed equally to
CC   this work.  Shinozaki,K. (RIKEN GSC) and Ecker,J.R. (SSP/Salk)
CC   contributed equally to this work as PIs.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1429
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="3"
FT                   /mol_type="mRNA"
FT                   /clone="RAFL09-10-O22(R12071)"
FT                   /note="ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   5'UTR           1..36
FT   CDS             37..1173
FT                   /codon_start=1
FT                   /product="AT3g03690/T12J13_3"
FT                   /note="lycosylation enzyme-like protein"
FT                   /db_xref="GOA:Q9ASZ7"
FT                   /db_xref="InterPro:IPR003406"
FT                   /db_xref="UniProtKB/TrEMBL:Q9ASZ7"
FT                   /protein_id="AAK32748.1"
FT                   /translation="MAIKKLLMISFSLTSLLFSLLYIIPTTKTLFTSSKIPSLPLESNQ
FT                   NSNSTLPCFAYLISASKGDAGKLKRLLRSLYHRRNHYLIHLDLEAPEEEHLEMIRFVAG
FT                   EPLFQPEGNVMIVGKPNLVTYRGPTMLATTLHAMALLLRCCRWDWFINLSASDYPLVTQ
FT                   DDLSDAFSELPRDLNFIQHTSRLGWKMNKRGKPIIIDPGLYSLNKSEIWWVSNQRSLPT
FT                   SFKLFTGSAWTFLSRPFAEYCIIGYDNLPRTLLLYYTNFVSSPEGYFQTLICNSDEFKN
FT                   TTVNHDLHYIAWDNPPKQHPKILGTRDYRKMVMSNRPFARKFKSNDPVLNRIDREILRR
FT                   KRKLGSKPDLGPGPGARRLKSLLMRLLLRRNFVNRQCR"
FT   3'UTR           1174..1429
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SQ   Sequence 1429 BP; 413 A; 318 C; 294 G; 404 T; 0 other;
     aaaaagagat tcgaagaaat ttacagagag acaaaaatgg cgataaagaa actgttgatg        60
     atctccttct ctcttacttc actcctcttc tctcttctct acatcatccc cacgaccaag       120
     actctattca cttcctcaaa aatcccttct ttacccctcg aatccaacca aaactccaac       180
     tctaccctcc cctgttttgc ttacctaatc tctgcatcca aaggcgacgc cggaaaactc       240
     aaacgcctcc tccgatctct ctaccaccgt agaaaccatt atttgatcca tctagacttg       300
     gaggcacccg aggaagagca tttggagatg atacggttcg tagccggaga gcctctgttt       360
     cagccggaag gtaatgtaat gatcgttgga aaaccgaatc tggtgactta cagaggacca       420
     acgatgcttg cgacgacgtt acacgcaatg gctttgctct tgagatgttg tcggtgggat       480
     tggttcatta atcttagtgc ttctgattat cctctcgtca cacaagacga tctatctgat       540
     gcattttctg agttgcctag agatctcaac ttcatacagc acacgagccg attaggatgg       600
     aaaatgaaca aaagagggaa accaataata atagatccag ggctttatag cctcaacaaa       660
     tcagagattt ggtgggttag taatcagcga agcctcccta cttctttcaa gctcttcaca       720
     ggttctgctt ggacattcct atcaagaccg ttcgcagaat attgtataat aggttatgac       780
     aacttaccaa gaacactgct tctctactac acaaacttcg tttcatcccc ggaaggctat       840
     tttcagacgc ttatatgcaa ctcggatgag ttcaagaaca cgaccgtgaa ccacgacctc       900
     cattacatcg cgtgggacaa tccgccaaag cagcacccca agatattagg gacaagggat       960
     tacagaaaga tggtaatgag caaccgacca ttcgctagga agttcaagag caatgacccc      1020
     gttctcaata ggatagaccg ggagattctg agaaggaaac ggaaacttgg gtcgaaaccc      1080
     gatcttggtc ctggtccggg ggctagaaga ttgaagagtt tactaatgag gcttttgttg      1140
     agaagaaact ttgtcaatag acaatgtaga taggaagtgt gacttacaca gctctatatg      1200
     gagatacttt ttattttgat cttattcttt cttgaatatt tttttggggg gttggtgttt      1260
     gttctttagt gattcataag ggaataaata acgaagaatt tacatataat gtgttggcct      1320
     ggtttggctt tggacttcaa tcaaagtcat tagcatgttt agaatgtctg gtgggctaga      1380
     ttgtgatact ccataaccat gttataaagc ttttccccaa tttgatctt                  1429
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