EBI Dbfetch

ID   AF334961; SV 1; linear; genomic DNA; STD; PRO; 1459 BP.
XX
AC   AF334961;
XX
DT   16-FEB-2001 (Rel. 66, Created)
DT   16-FEB-2001 (Rel. 66, Last updated, Version 1)
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DE   Campylobacter jejuni strain NCTC 11351 LOS biosynthesis cluster, partial
DE   sequence.
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KW   .
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OS   Campylobacter jejuni
OC   Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
OC   Campylobacteraceae; Campylobacter.
XX
RN   [1]
RP   1-1459
RA   Oldfield N.J., Millar L.A., Ketley J.M.;
RT   "Gene content polymorphisms in Campylobacter jejuni LOS biosynthesis
RT   clusters";
RL   Unpublished.
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RN   [2]
RP   1-1459
RA   Oldfield N.J., Ketley J.M.;
RT   ;
RL   Submitted (10-JAN-2001) to the EMBL/GenBank/DDBJ databases.
RL   Department of Genetics, University of Leicester, University Road, Leicester
RL   LE1 7RH, UK
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FH   Key             Location/Qualifiers
FH
FT   source          1..1459
FT                   /organism="Campylobacter jejuni"
FT                   /strain="NCTC 11351"
FT                   /mol_type="genomic DNA"
FT                   /note="inner core biosynthesis genes"
FT                   /db_xref="taxon:197"
FT   CDS             <1..218
FT                   /codon_start=3
FT                   /transl_table=11
FT                   /gene="waaF"
FT                   /product="WaaF"
FT                   /note="heptosyltransferase II"
FT                   /db_xref="UniProtKB/TrEMBL:Q9ALY3"
FT                   /protein_id="AAK08965.1"
FT                   /translation="AVYKVKTVAIFGPTKFTQTSPWQNENARWVHLNLACMPCMQKTCP
FT                   LKHHKCMKDLKPEIIIEVSKQLLFLN"
FT   CDS             complement(225..980)
FT                   /codon_start=1
FT                   /transl_table=11
FT                   /product="unknown"
FT                   /db_xref="GOA:Q9ALY2"
FT                   /db_xref="InterPro:IPR002654"
FT                   /db_xref="UniProtKB/TrEMBL:Q9ALY2"
FT                   /protein_id="AAK08966.1"
FT                   /translation="MKVFIINLERSLDRKEHIQKQIQKLFEKNLSLKNKLEFIFFKAID
FT                   AKNKEHLEFKDHFPWWGSWVLGRELSDGEKACFASHYKLWQECVKLDEPIIILEDDVEF
FT                   SDEFLNNGAEYIDELLKSKYEYIRLCYLTQGKMLKLNDNFLFTLDSIGGTQGYLIKPIS
FT                   ALKFIDNLKFWIKPVDNVMDMYYYSKVFTITYTPLLLKTTDINSTIEERKKDKRPIFKR
FT                   IIKEICRLYFIYLKFTYKQKAIKFLRREV"
FT   CDS             complement(980..>1459)
FT                   /codon_start=1
FT                   /transl_table=11
FT                   /gene="gmhA"
FT                   /product="GmhA"
FT                   /note="phosphoheptose isomerase"
FT                   /db_xref="GOA:Q9ALY1"
FT                   /db_xref="InterPro:IPR001347"
FT                   /db_xref="UniProtKB/TrEMBL:Q9ALY1"
FT                   /protein_id="AAK08967.1"
FT                   /translation="KVGELLCECLKKGGKILICGNGGSAADAQHFAAELSGRYKKERKA
FT                   LAGIALTTDTSALSAIGNDYGFEFVFSRQVEALGNENDVLIGISTSGKSPNVLEAFKKA
FT                   KELNMLCLGLSGKGGGMMNKLCDHNLVRASDDTARIQEMHILIIHTLCQIIDEGF"
XX
SQ   Sequence 1459 BP; 494 A; 286 C; 174 G; 505 T; 0 other;
     gtgcggttta taaggtaaaa accgtggcta tttttggccc tacgaaattt actcaaactt        60
     caccttggca aaatgaaaat gcaagatggg tgcatttaaa tctagcttgt atgccttgta       120
     tgcaaaaaac ctgcccttta aaacaccaca aatgcatgaa agatttaaaa ccagaaatca       180
     tcatagaagt aagtaaacaa ttgctatttc taaattaatt aaaattatac ttcacgtctt       240
     aaaaatttta ttgccttttg tttatatgta aattttaaat aaataaaata caacctacaa       300
     atttctttaa ttattctttt aaaaataggt cttttgtctt tttttctctc ttcaatagtg       360
     gaattaatat ctgttgtctt tagtaaaaga ggagtgtaag ttatagtaaa aactttacta       420
     taataataca tatccataac attatccact ggtttaatcc aaaattttaa attatcaata       480
     aattttaaag ccgaaatagg ttttataaga tacccttgtg ttccgccaat actatccaaa       540
     gtaaacaaaa aattatcatt aagcttcaac attttacctt gtgttaaata acaaagtctt       600
     atatattcat acttactctt taacaattca tctatatatt ctgccccatt atttaaaaat       660
     tcatcgctaa attccacatc atcttctagg atgattatag gctcatcaag cttcacacat       720
     tcttgccaaa gtttataatg actagcaaaa caagcttttt ctccatcaga aagctctctg       780
     cccagcaccc aagaacccca ccaaggaaaa tgatctttaa attccaaatg ttctttattt       840
     ttagcatcaa tagccttaaa gaaaataaat tctaatttat tttttaaact aagatttttt       900
     tcaaaaagct tttgaatttg tttttgtata tgctcttttc tatctaaaga acgctctaag       960
     ttgatgataa aaactttcat taaaaaccct catctatgat ctgacaaagt gtgtgtatga      1020
     tcaaaatgtg catttcttga attctagccg tatcatcact tgcacggaca agattgtgat      1080
     cgcaaagctt attcatcatt ccaccaccct ttccactaag ccctagacaa agcatattaa      1140
     gttcttttgc ttttttaaaa gcttctaaaa cattagggct ttttccactg gttgaaatac      1200
     cgattaaaac atcattttca tttcctaaag cttccacttg tcttgaaaaa acaaactcaa      1260
     aaccatagtc atttcctata gcactaagtg ctgaagtatc ggttgtaagc gctatacctg      1320
     ctaaagcctt gcgttctttt ttataacgcc cgctaagttc agccgcaaaa tgctgagcat      1380
     cagctgcgct tccaccattt ccgcaaatca aaatcttgcc gcctttttta agacattcgc      1440
     acaaaagctc acctacttt                                                   1459
//