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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AF334378; SV 1; linear; genomic DNA; STD; PRO; 1468 BP.
XX
AC   AF334378;
XX
DT   14-FEB-2001 (Rel. 66, Created)
DT   16-FEB-2001 (Rel. 66, Last updated, Version 2)
XX
DE   Campylobacter jejuni strain 8F 169 LOS biosynthesis cluster, partial
DE   sequence.
XX
KW   .
XX
OS   Campylobacter jejuni
OC   Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
OC   Campylobacteraceae; Campylobacter.
XX
RN   [1]
RP   1-1468
RA   Oldfield N.J., Millar L.A., Ketley J.M.;
RT   "Gene content polymorphisms in the LOS biosynthesis loci of Campylobacter
RT   jejuni";
RL   Unpublished.
XX
RN   [2]
RP   1-1468
RA   Oldfield N.J., Ketley J.M.;
RT   ;
RL   Submitted (08-JAN-2001) to the EMBL/GenBank/DDBJ databases.
RL   Department of Genetics, University of Leicester, University Road, Leicester
RL   LE1 7RH, UK
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1468
FT                   /organism="Campylobacter jejuni"
FT                   /strain="8F 169"
FT                   /mol_type="genomic DNA"
FT                   /note="inner core biosynthesis genes"
FT                   /db_xref="taxon:197"
FT   CDS             <1..489
FT                   /codon_start=1
FT                   /transl_table=11
FT                   /gene="gmhA"
FT                   /product="GmhA"
FT                   /note="phosphoheptose isomerase"
FT                   /db_xref="GOA:Q9ALZ4"
FT                   /db_xref="InterPro:IPR001347"
FT                   /db_xref="InterPro:IPR004515"
FT                   /db_xref="InterPro:IPR020620"
FT                   /db_xref="UniProtKB/TrEMBL:Q9ALZ4"
FT                   /protein_id="AAK08088.1"
FT                   /translation="QIAKVGELLCECLKKGGKILICGNGGSAADAQHFAAELSGRYKKE
FT                   RKALAGIALTTDTSALSAIGNDYGFEFVFSRQVEALGNENDVLIGISTSGKSLNVLEAF
FT                   KKAKELNMLCLGLSGKGGGMMNKLCDHNLVVPSDDTARIQEMHILIIHTLCQIIDEGF"
FT   CDS             489..1253
FT                   /codon_start=1
FT                   /transl_table=11
FT                   /product="unknown"
FT                   /db_xref="GOA:Q9ALZ3"
FT                   /db_xref="InterPro:IPR002654"
FT                   /db_xref="UniProtKB/TrEMBL:Q9ALZ3"
FT                   /protein_id="AAK08089.1"
FT                   /translation="MKVFIINLERSLDRKEHMKKQIQKLFEKNPSLKNKLEFIFFKAID
FT                   AKNKEHLEFKDHFPWWGSWVLGRELSDGEKACFASHYKLWQECVKLDEPIIILEDDVEF
FT                   SDEFLIMGQEYIDELLKSKYEYIRLCYLFDKRLYFLSEGGYYLSFEKLAGTQGYVLQVS
FT                   AAMKFLKYAKNWIYAVDDYMDMFYKHNVLNIVKKPLLLKHDCRIESSISQARRLFLKAK
FT                   FYRKIIREIFRLYRNILKLSYTFYIKKKLDIS"
FT   CDS             complement(1239..>1468)
FT                   /codon_start=3
FT                   /transl_table=11
FT                   /gene="waaF"
FT                   /product="WaaF"
FT                   /note="heptosyltransferase II"
FT                   /db_xref="GOA:Q9ALZ2"
FT                   /db_xref="InterPro:IPR002201"
FT                   /db_xref="UniProtKB/TrEMBL:Q9ALZ2"
FT                   /protein_id="AAK08090.1"
FT                   /translation="PMHLSAVYKVKTVAIFGPTKFTQTSPWQNENATLVHLNLACMPCM
FT                   QKTCPLKHHKCMKDLKPEVIVKAIQNLTNI"
XX
SQ   Sequence 1468 BP; 501 A; 167 C; 297 G; 503 T; 0 other;
     caaatcgcta aagtaggtga gcttttatgt gaatgtctta aaaaaggtgg taaaatttta        60
     atttgcggaa atggtggaag tgcagctgat gcacagcatt ttgcagctga acttagtggg       120
     cgttataaaa aagaacgcaa ggctttagca ggtatagcgc ttacaaccga tacttcagcg       180
     cttagtgcta taggaaatga ctatggtttt gagtttgttt tttcaagaca agtggaggct       240
     ttaggaaatg aaaatgatgt tttaatcggc atttcaacca gtggaaaaag tctcaatgtt       300
     ttagaagctt ttaaaaaagc aaaagaactt aatatgcttt gtttagggct tagtggaaag       360
     ggcggtggaa tgatgaataa gctttgtgat cataatcttg ttgtgccaag cgatgatacg       420
     gctagaattc aagaaatgca cattttaatc atacacacac tttgtcagat catcgatgag       480
     ggtttttaat gaaagttttt atcataaatt tagagcgttc tttagataga aaagagcata       540
     tgaaaaaaca aattcaaaag ctttttgaaa aaaatcctag tttaaaaaat aaattagaat       600
     ttattttctt taaagctatt gatgctaaaa ataaagaaca tttggaattt aaagatcatt       660
     ttccttggtg gggttcttgg gtgctgggca gagagctttc tgatggagaa aaagcttgtt       720
     ttgctagtca ttataaactt tggcaagaat gtgtgaagct tgatgagcct ataatcatcc       780
     tagaagatga tgtggaattt agcgatgaat ttttaataat ggggcaagaa tatatagatg       840
     agctattaaa gagcaaatat gaatatataa gactttgtta tttgttcgat aaaagattgt       900
     attttttgag cgagggtgga tattatttaa gttttgaaaa gcttgctgga actcaaggtt       960
     atgtactgca agtaagtgct gcaatgaaat ttcttaaata tgctaaaaat tggatctatg      1020
     ccgtagatga ttatatggat atgttttata aacataatgt gttaaatata gttaaaaagc      1080
     ctttattatt aaaacatgat tgtagaatag aaagttcaat ttctcaagct agacgtttat      1140
     ttttgaaggc taaattttac agaaaaatta ttagagaaat ttttagactt tatagaaata      1200
     ttttaaaact atcttatact ttttacatta agaaaaaatt agatattagt taaattttga      1260
     atcgctttta caatcacttc aggctttaaa tctttcatgc atttgtggtg ttttaaaggg      1320
     caggtttttt gcatacaagg catacaagct agatttaaat gcactaatgt tgcgttttca      1380
     ttttgccaag gtgaggtttg agtaaatttt gtagggccaa aaatagccac ggtttttacc      1440
     ttataaactg cacttaggtg cataggtc                                         1468
//
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