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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AF324007; SV 1; linear; genomic DNA; STD; HUM; 1942 BP.
XX
AC   AF324007;
XX
DT   05-DEC-2001 (Rel. 70, Created)
DT   14-NOV-2006 (Rel. 89, Last updated, Version 3)
XX
DE   Homo sapiens alpha-3-galactosylaminyltransferase (ABO) gene, ABO-Ax-5
DE   allele, exons 6 and 7 and partial cds.
XX
KW   .
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-1942
RX   DOI; 10.1182/blood.V98.5.1585
RX   PUBMED; 11520811.
RA   Olsson M.L., Irshaid N.M., Hosseini-Maaf B., Hellberg A., Moulds M.K.,
RA   Sareneva H., Chester M.A.;
RT   "Genomic analysis of clinical samples with serologic ABO blood grouping
RT   discrepancies: identification of 15 novel A and B subgroup alleles";
RL   Blood 98(5):1585-1593(2001).
XX
RN   [2]
RP   1-1942
RA   Olsson M.L., Irshaid N.M., Hosseini B.;
RT   ;
RL   Submitted (27-NOV-2000) to the EMBL/GenBank/DDBJ databases.
RL   Blood Centre, University Hospital, Getingevagen, Lund SE-221 85, Sweden
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1942
FT                   /organism="Homo sapiens"
FT                   /chromosome="9"
FT                   /map="9q34"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:9606"
FT   exon            1..135
FT                   /gene="ABO"
FT                   /number=6
FT   CDS             join(<1..135,1188..1878)
FT                   /codon_start=2
FT                   /gene="ABO"
FT                   /product="alpha-3-galactosylaminyltransferase"
FT                   /EC_number="2.4.1.40"
FT                   /note="glycosyltransferase; similar to sequences encoded by
FT                   GenBank Accession Numbers AF016624, AF016625 and AF324006"
FT                   /db_xref="GOA:O15512"
FT                   /db_xref="HGNC:79"
FT                   /db_xref="HSSP:1R81"
FT                   /db_xref="InterPro:IPR005076"
FT                   /db_xref="UniProtKB/TrEMBL:O15512"
FT                   /protein_id="AAL37339.1"
FT                   /translation="RKDVLVVTPWLAPIVWEGTFNIDILNEQFRLQNTTIGLTVFAIKK
FT                   YVAFLKLFLETAEKHFMVGHRVHYYVFTDQPAAVPRVTLGTGRQLSVLEVRAYKRWQDV
FT                   SMRRMEMISDFCERRFLSEVDYLVCVDVDMEIRDHVGVEILTPLFGTLHPGFYGSSREA
FT                   FTYERRPQSQAYIPKDEGDFYYLGGFFGGSVQEMQRLTRACHQAMMVDQANGIEAVWHD
FT                   ESHLNKYLLRHKPTKVLSPEYLWDQQLLGWPAVLRKLRFTAVPKNHQAVRNP"
FT   mRNA            join(<1..135,1188..>1942)
FT                   /gene="ABO"
FT                   /product="alpha-3-galactosylaminyltransferase"
FT   intron          136..1187
FT                   /gene="ABO"
FT                   /number=6
FT                   /note="contains multiple polymorphic sites"
FT   exon            1188..>1942
FT                   /gene="ABO"
FT                   /number=7
FT   3'UTR           1879..>1942
FT                   /gene="ABO"
XX
SQ   Sequence 1942 BP; 362 A; 576 C; 654 G; 350 T; 0 other;
     taggaaggat gtcctcgtgg tgaccccttg gctggctccc attgtctggg agggcacatt        60
     caacatcgac atcctcaacg agcagttcag gctccagaac accaccattg ggttaactgt       120
     gtttgccatc aagaagtaag tcagtgaggt ggccgagggt agagacccag gcagtggcga       180
     gtgactgtgg acattgaggt ctctccttgt gttcaagaca gagaggggtg gcggccagcc       240
     ttgtcctccc agagggtaga tgggaaaggt cattcatgca gcatcttact gagctcacgt       300
     gggctcgtgg gctcgtgggc tcaccaggtc ggtaaaaccc agctccttct ccagaggctg       360
     tgtctcaccg agggatggtg gcttctgctg ccccctcctc tctgtaactg tagccggccg       420
     ccatgctgag ccaccccctc aatacaaggc tccagatgtt tcctgctcac tgaccagaga       480
     tagcaggagg gggacacctg tttgctgtcc ttggacccta gaaagaggat gctggcagag       540
     ccgtggtcac ttctctgtca gatgtaggtg gggcaggcaa ggcagttggc cccagacacc       600
     aaaggaagtg gctgacccac aaggccccgg gactctgggc caggccagag agggagctag       660
     ccaggcaacc gcagacacat acttgacttc tcggcagctg tgggcagctg ggccagcgac       720
     agtggcggag gccaggaatg acttactctt aggaataggt gcagttcaag cctggaggga       780
     ggaagctcta gggtgcagag gcgggtgtgt ggaggcctcg cgtgcagctt ataatgaggg       840
     agcacgtggc cagcctggcc ataagagggg cagctgcgtg gggaggcgtg gctcaggcca       900
     ggctgagggg gagtgagcgg gcgccagcct gcggcctgct accagcctcc agccacctgc       960
     cctcagccct ccttagtaag agggggtgct ggtggtcccc catcgctggg aagaggatga      1020
     agtgagtcgc agcccgagga ctcgcgcagg acagggcagg agaacgtggt gcatctgctg      1080
     ctctgaacct tccaatggcc gctggcgggc gggtgcagga cgggcctcct gcagcccagg      1140
     ggtgcgcagc cggcggctcc cccagccccc gtccgcctgc cttgcagata cgtggctttc      1200
     ctgaagctgt tcctggagac ggcggagaag cacttcatgg tgggccaccg tgtccactac      1260
     tatgtcttca ccgaccagcc ggccgcggtg ccccgcgtga cgctggggac cggtcggcag      1320
     ctgtcagtgc tggaggtgcg cgcctacaag cgctggcagg acgtgtccat gcgccgcatg      1380
     gagatgatca gtgacttctg cgagcggcgc ttcctcagcg aggtggatta cctggtgtgc      1440
     gtggacgtgg acatggagat ccgcgaccac gtgggcgtgg agatcctgac tccactgttc      1500
     ggcaccctgc accccggctt ctacggaagc agccgggagg ccttcaccta cgagcgccgg      1560
     ccccagtccc aggcctacat ccctaaggac gagggcgatt tctactacct gggggggttc      1620
     ttcggggggt cggtgcaaga gatgcagcgg ctcaccaggg cctgccacca ggccatgatg      1680
     gtcgaccagg ccaacggcat cgaggccgtg tggcacgacg agagccacct gaacaagtac      1740
     ctgctgcgcc acaaacccac caaggtgctc tcccccgagt acttgtggga ccagcagctg      1800
     ctgggctggc ccgccgtcct gaggaagctg aggttcactg cggtgcccaa gaaccaccag      1860
     gcggtccgga acccgtgagc ggctgccagg ggctctggga gggctgccgg cagccccgtc      1920
     cccctcccgc ccttggtttt ag                                               1942
//
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