 |
|
EBI DbfetchID AF318176; SV 1; linear; genomic DNA; STD; PRO; 4542 BP. XX AC AF318176; XX DT 25-DEC-2000 (Rel. 66, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 2) XX DE Paenibacillus alginolyticus putative xanthan lyase XalB precursor (xalB) DE gene, complete cds. XX KW . XX OS Paenibacillus alginolyticus OC Bacteria; Firmicutes; Bacillales; Paenibacillaceae; Paenibacillus. XX RN [1] RP 1-4542 RX DOI; 10.1128/AEM.66.9.3945-3950.2000 RX PUBMED; 10966413. RA Ruijssenaars H.J., Hartmans S., Verdoes J.C.; RT "A novel gene encoding xanthan lyase of Paenibacillus alginolyticus strain RT XL-1"; RL Appl. Environ. Microbiol. 66(9):3945-3950(2000). XX RN [2] RP 1-4542 RA Ruijssenaars H.J., Hartmans S., Verdoes J.C.; RT "xalB, a potential xanthan lyase gene of Paenibacillus alginolyticus XL-1"; RL Unpublished. XX RN [3] RP 1-4542 RA Ruijssenaars H.J., Wery J., Hartmans S., Verdoes J.C.; RT ; RL Submitted (30-OCT-2000) to the EMBL/GenBank/DDBJ databases. RL Industrial Microbiology, Wageningen University, P.O. Box 8129, Wageningen RL 6700EV, The Netherlands XX FH Key Location/Qualifiers FH FT source 1..4542 FT /organism="Paenibacillus alginolyticus" FT /strain="XL-1" FT /mol_type="genomic DNA" FT /db_xref="taxon:59839" FT -35_signal 388..400 FT -10_signal 434..440 FT RBS 444..459 FT sig_peptide 464..559 FT /gene="xalB" FT CDS 464..3640 FT /codon_start=1 FT /transl_table=11 FT /gene="xalB" FT /product="putative xanthan lyase XalB precursor" FT /note="polysaccharide lyase family 8 member; similar to FT XalA sequence deposited in GenBank Accession Number FT AF242413" FT /db_xref="GOA:Q9EYM9" FT /db_xref="HSSP:1J0M" FT /db_xref="InterPro:IPR001711" FT /db_xref="UniProtKB/TrEMBL:Q9EYM9" FT /protein_id="AAG42262.1" FT /translation="MTKMFKWTAMMVSLMLTVLVAVNAVSVPRAAAADEFDAMRDKWKV FT TLTGGTAYNPLDPAIAAQITAITDEANANWSTMDNTPGTYLWSDLAGTAAADAGQLTSG FT HNRIKTMALAYATKGSSLQNDASLCSDILIALDWMYANRYNETKAKNGNWWDWEIGVPL FT ALNDIVVLMYDQLSPTQITNYMNAVDHFQPTVTMTGANRVWECTVIGIRGIIVKSSAKL FT ITARDGLSNVFNYVTSGDGFYKDGSFIQHGNHPYNGGYGIGLMKDLADLLYVLDDSTWE FT VTNVGIQNVYRWIYDSFEPFIYKGGMMDMTRGRDVSRYYDQDHDSGASIIGAIIRISQF FT APAADAAAFRSMVKSWITADTTHDYFTHTSINFIVLAKEIVANASPRAELVKNYQFTGM FT DRTVHLRPGFGYGISMHSSRIYNYESINSENLKGWYLGDGATYLYNNDLTQYTDYWPTV FT NPYRLPGTTVDTVTKTNSNGHDQLSSMNWAGGTSILDTYGTSGMELDAVGSTLTAKKSW FT FLFDDEIVALGAGITSTDNRTIETIVENRKLNSSGTNAFTVNGTLKSNGLGFSESMTGV FT NWAHLAGSVSGSDIGYYFPGGSALKGLTEARTGKWSSIDSRASTPTTNVTSNFLTMWFD FT HGSNPTNGTYAYVTLPNKTSAQVSSYASNPNVTILENSASAQAVKENTLNVIGMNFWAD FT ALKWVQVGGANFVSSNKKASVMTSETANDIEIAVSDPTQANTSGINLEINRSATSALSV FT DPGVTVTQYAPTIKLTINTAAAKGKTFKAKLSYTAPPPGEIIVDNSSAELTGTWISSTG FT LPNYYGSDYVYNGVGTGADKIKWRPTILTEGDYDVYYRIPDGNAGRSTNAPFTVYYSGG FT SQAYAVNEQVVPGGQWIKLGTHHFVSGTSGYVELTDNANGTYVNADAVKFVLTVPSEII FT VDNSDAELFGTWLFSTGLPNYYGSDYVYSNTGTGADKIRWRPTIPVTGDYQVYYRIPDG FT NTARATNAPFKVYYDGGSQLYTVNEQTVPGGVWMLLGTHHFLAGTTGYVELTDNANGSY FT VNADAIKFVR" XX SQ Sequence 4542 BP; 1147 A; 1062 C; 1255 G; 1078 T; 0 other; acaggtaaat ggagcagcat cgattcaaga gcgtcgacag gtttcagcgg caagttcaat 60 aagaacattt tcatcatcaa taatcgcatg agaaattcag aaattggcgt gcatgccgtt 120 gatgcgcatg aggtttacct gcttggcaac agctttgcaa atatcgaagt tcctttatta 180 aaagaggagg cagtcgtcgg cgaaattgtg gagcatctga atcggattca gtcctaggcg 240 gaaggcggga ggcattgaac aatgcgttgg tgcagcccgc ctgtaacaaa tattagaaca 300 ttttcgcagg atcgctgtac atttttacgt gaaagcgctt gctatactgg gattgtttcc 360 caacgaagtt gctccggagg tgatcggaaa ttcaggaaca cgcgacagga gggtaagggt 420 caaatgtaag cgctttatat catgaaggag aaaggggaat tttatgacca aaatgttcaa 480 gtggaccgct atgatggttt ctctgatgct tacggtgctt gttgctgtga acgcggtatc 540 ggtgcctcgg gctgcagcgg ctgatgagtt tgatgccatg cgggataaat ggaaggtgac 600 gttgacagga ggtaccgcgt ataacccgct cgaccccgcg attgccgctc aaatcacggc 660 gattacggat gaggccaatg ccaattggag cacgatggac aacacgccgg gcacctattt 720 atggagtgac cttgccggca ctgcggctgc ggatgccgga cagctcacat ctggccataa 780 tcgcatcaag acgatggcgc tcgcgtatgc gaccaaggga tcttccctgc aaaatgatgc 840 gtcgctgtgc tcggatattc tcatcgcgct cgattggatg tatgcgaacc gctacaacga 900 gacgaaagcg aaaaacggca actggtggga ttgggagatc ggcgtaccgc ttgcgctcaa 960 tgatattgtg gtgctgatgt acgatcaatt gagcccaacg cagattacga actatatgaa 1020 cgccgtcgat cattttcagc ctacggtgac gatgaccggg gcgaatcgcg tatgggagtg 1080 taccgtaatt ggcattcggg ggattattgt aaaaagttcc gccaaactga tcaccgcgcg 1140 cgacgggctc agcaatgtct ttaattacgt gacgagcggg gatggcttct acaaagacgg 1200 ttcgtttatt caacacggga accatcccta taatggtgga tacggcatcg ggcttatgaa 1260 ggatttggcc gatttgctgt atgtgctgga cgattccacc tgggaagtca cgaatgtggg 1320 gattcagaac gtgtaccgct ggatttacga ttcctttgag cctttcatct acaagggcgg 1380 catgatggat atgaccagag gcagagacgt ctcccgctac tacgatcagg accatgacag 1440 cggggcctcg atcattggcg ccattatccg catttcgcaa ttcgcgcctg ccgccgatgc 1500 ggctgcgttc cgcagtatgg tcaagagctg gattacagcg gatacgaccc atgattattt 1560 cacgcatacg tcgattaatt ttattgtact ggccaaagaa attgtggcga acgcctcgcc 1620 gcgggcggaa ctggtcaaga actatcagtt caccgggatg gatcgcaccg ttcatctgcg 1680 tcctggcttc ggttacggca tcagcatgca ttcaagccgt atctacaact acgaatccat 1740 caacagcgag aatttgaaag gctggtattt gggtgacggg gcgacgtatc tctacaacaa 1800 tgatctcacc cagtacacag attattggcc gaccgtgaat ccctaccggc tgccgggcac 1860 gaccgttgat acggtgacga aaacaaattc caacggccac gatcagctca gcagcatgaa 1920 ttgggcaggc ggcacgtcca ttctggatac gtacggcacg tcggggatgg agctggatgc 1980 ggtcggcagt acattgacgg cgaagaaaag ctggttcctg tttgacgacg aaatcgtcgc 2040 cctgggcgca gggatcacca gtacagacaa tcgcacgatt gagacgattg tcgagaaccg 2100 caagctgaac agcagcggta ccaatgcctt taccgtgaac ggcacactga aatcgaatgg 2160 actgggcttc tccgagtcga tgacgggtgt gaactgggcg catttggccg gcagcgtatc 2220 tggctccgat attggctact acttcccagg cggctcagcg ctgaaagggc tgacggaagc 2280 cagaacaggt aaatggagca gcatcgattc aagagcgtcg acgccgacga cgaatgtcac 2340 gagtaatttt ttaaccatgt ggtttgatca tggcagcaat ccgacgaacg gcacttatgc 2400 ttatgtgacg cttcccaata aaacgagtgc gcaagtcagc agctacgcga gcaatccgaa 2460 tgtgacgatt ctggagaatt ccgcgtctgc ccaagctgtg aaggaaaata cgttaaatgt 2520 catcgggatg aatttctggg cggatgcgtt gaaatgggtg caagtgggcg gcgccaactt 2580 tgtatctagt aacaagaaag cgtccgtgat gaccagcgaa acggcgaatg acatcgaaat 2640 tgccgtctcc gatccgacgc aagcgaacac aagtggcatc aatctggaaa ttaaccgcag 2700 tgcaaccagc gcgctttctg tcgaccctgg tgttacggtt acgcagtatg caccgacgat 2760 taagctgacg atcaatacag cggcagccaa aggaaaaacg ttcaaagcga agctgagcta 2820 caccgctccg ccgccaggag aaattatcgt cgataatagc tccgcggaat tgaccgggac 2880 ttggatctct tcgacaggac ttccgaatta ctatggttcc gattacgtct ataacggtgt 2940 gggaaccggc gcagataaaa tcaaatggcg cccgacgatt ctcaccgaag gcgattacga 3000 tgtgtactat cggattcccg acggcaatgc aggccgttca acaaatgctc catttacggt 3060 gtattacagc ggaggttcgc aagcgtatgc ggtgaacgag caggtggtgc ctggtggaca 3120 gtggattaaa ctgggcaccc accattttgt ctcgggcacg tccgggtatg tcgaattgac 3180 ggataatgcg aatggtacgt acgtgaatgc ggacgctgtg aagtttgtgt tgacggtacc 3240 ttccgaaatc attgtggata actcggacgc ggaattgttc gggacgtggt tattctcgac 3300 cggcttgccg aactattacg gctcggatta tgtgtacagc aatacaggca ccggtgcgga 3360 caaaatcaga tggagaccga cgattccagt cacgggggat tatcaggtat actaccggat 3420 tcccgacgga aacacggctc gcgcaactaa tgcgccgttc aaggtctact acgatggcgg 3480 ctcgcagttg tataccgtga acgaacagac cgttccggga ggggtatgga tgttgctggg 3540 gacgcatcat ttccttgcgg gcaccacagg ctatgtcgag ctgacggaca atgccaacgg 3600 aagctacgtg aatgcggatg cgattaagtt tgtgaggtaa aagcgggtgg ggctgctcca 3660 gaagcgaaaa gcttcagggc agcccttttg cgtcaacatg ttaggttttg cggcaagcgg 3720 gttggggaaa gcttcgattc tcgataagag tggtaaacca cgcttattgt tgcggtgaac 3780 gtcaacttct taaaaataag agtggcaaat ggacctctgt caagatagta gacacacttt 3840 aagtgagccg ttatgcagct cttttaaatt gcgcagcaaa gtgaaccggc gatacgtatc 3900 cgattgagct gtgaattcgt ttacggttgt aaaagaactc aatgtaacta aaaatcgcat 3960 catacgcctg ctgcttggtc ttaaatttgg tgcagtaaat cagttccttc tttagaatgc 4020 tgtgaaagga ctcaatgcag gcattgtcat aacaattgcc tttgcggctc atgcttattc 4080 gcatgccata ggttttcaat ttaccacggt actcgtgaga cgcgtactgc gagcctcgat 4140 ccgaatgatg catcagcttc ttctttggtt tcttggcctt gtaggcggct tcaagtgcgt 4200 cgattactaa ctccttggtc atccggtcgt agagcttcca gccgacgatc tcgcgggtgc 4260 acaagtccat tacgctagcc aggtataaac ggccttcacg acaagggata tacgtaatgt 4320 ccgctaccca taccttgttc ggctttaaca ccttaaattg tcggttaaga agattcggtg 4380 cgatcggcaa atcatggttc gaatccgttg tctgaacctt gaatttccgg gatgtacagg 4440 aacgcagacc cagttctttc atgtacttaa atacggtgcg ttccgagatc tggatatctt 4500 ctttccacag catctgtgta attttagggc tgccatagcg cc 4542 // |
|