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EBI DbfetchID AF315558; SV 1; linear; mRNA; STD; MUS; 6267 BP. XX AC AF315558; XX DT 02-NOV-2000 (Rel. 65, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Mus musculus Down syndrome cell adhesion molecule (Dscam) mRNA, complete DE cds. XX KW . XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-6267 RX PUBMED; 11856873. RA Barlow G.M., Micales B., Lyons G.E., Korenberg J.R.; RT "Down syndrome cell adhesion molecule is conserved in mouse and highly RT expressed in the adult mouse brain"; RL Cytogenet. Cell Genet. 94(3-4):155-162(2001). XX RN [2] RP 1-6267 RA Barlow G.M., Korenberg J.R.; RT ; RL Submitted (23-OCT-2000) to the EMBL/GenBank/DDBJ databases. RL Medical Genetics, Cedars-Sinai Medical Center, 8700 Beverly Blvd., Los RL Angeles, CA 90048, USA XX DR ASTD; TRAN00000138239. XX FH Key Location/Qualifiers FH FT source 1..6267 FT /organism="Mus musculus" FT /chromosome="16" FT /strain="C57BL/6" FT /mol_type="mRNA" FT /sex="female" FT /dev_stage="19 week old adult" FT /clone="CHD2-M10" FT /tissue_type="brain" FT /db_xref="taxon:10090" FT CDS 105..6146 FT /codon_start=1 FT /gene="Dscam" FT /product="Down syndrome cell adhesion molecule" FT /note="DSCAM; immunoglobulin superfamily member" FT /db_xref="GOA:Q9ERC8" FT /db_xref="HSSP:1F97" FT /db_xref="InterPro:IPR003598" FT /db_xref="InterPro:IPR003599" FT /db_xref="InterPro:IPR003961" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR008957" FT /db_xref="InterPro:IPR013098" FT /db_xref="InterPro:IPR013151" FT /db_xref="InterPro:IPR013783" FT /db_xref="MGI:1196281" FT /db_xref="UniProtKB/TrEMBL:Q9ERC8" FT /protein_id="AAG28796.1" FT /translation="MWILALSLFQSFANVFSEEPHSSLYFVNASLQEVVFASTSGTLVP FT CPAAGIPPVTLRWYLATGEEIYDVPGIRHVHPNGTLQIFPFPPSSFSTLIHDNTYYCTA FT ENPSGKIRSQDVHIKAVLREPYTVRVEDQKTMRGNVAVFKCIIPSSVEAYVTVVSWEKD FT TVSLVSGSRFLITSTGALYIKDVQNEDGLYNYRCITRHRYTGETRQSNSARLFVSDPAN FT SAPSILDGFDHRKAMAGQRVELPCKALGHPEPDYRWLKDNMPLELSGRFQKTVTGLLIE FT NSRPSDSGSYVCEVSNRYGTAKVIGRLYVKQPLKATISPRKVKSSVGSQVSLSCSVTGN FT EDQELSWYRNGEILNPGKNVRITGLNHANLIMDHMVKSDGGAYQCFVRKDKLSAQDYVQ FT VVLEDGTPKIISAFSEKVVSPAEPVSLVCNVKGTPLPTVTWTLDDDPILKGSGHRISQM FT ITSEGNVVSYLNISSSQVRDGGVYRCTANNSAGVVLYQARINVRGPASIRPMKNITAIA FT GRDTYIHCRVIGYPYYSIKWYKNANLLPFNHRQVAFENNGTLKLSDVQKEVDEGEYTCN FT VLVQPQLSTSQSVHVTVKVPPFIQPFEFPRFSIGQRVFIPCVVVSGDLPITITWQKDGR FT PIPASLGVTIDNIDFTSSLRISNLSLMHNGNYTCIARNEAAAVEHQSQLIVRVPPKFVV FT QPRDQDGIYGKAVILNCSAEGYPVPTIVWKFSKGAGVPQFQPIALNGRIQVLSNGSLLI FT KHVVEEDSGYYLCKVSNDVGADVSKSMYLTVKIPAMITSYPNTTLATQGQRKEMSCTAH FT GEKPIIVRWEKEDRIINPEMARYLVSTKEVGEEVISTLQILPTVREDSGFFSCHAINSY FT GEDRGIIQLTVQEPPDPPEIEIKDVKARTITLRWTMGFDGNSPITGYDIECKNKSDSWD FT SAQRTKDVSPQLNSATIIDIHPSSTYSIRMYAKNRIGKSEPSNEITITADEAAPDGPPQ FT EVHLEPTSSQSIRVTWKAPKKHLQNGIIRGYQIGYREYSTGGNFQFNIISIDTTGDSEV FT YTLDNLNKFTQYGLVVQACNRAGTGPSSQEIITTTLEDVPSYPPENVQAIATSPESISI FT SWSTLSKEALNGILQGFRVIYWANLIDGELGEIKNVTTTQPSLELDGLEKYTNYSIQVL FT AFTRAGDGVRSEQIFTRTKEDVPGPPAGVKAAAASASMVFVSWLPPLKLNGIIRKYTVF FT CSHPYPTVISEFEASPDSFSYRIPNLSRNRQYSVWVVAVTSAGRGNSSEIITVEPLAKA FT PARILTFSGTVTTPWMKDIVLPCKAVGDPSPAVKWMKDSNGTPSLVTIDGRRSIFSNGS FT FIIRTVKAEDSGYYSCVANNNWGSDEIILNLQVQVPPDQPRLTVSKTTSSSITLSWLPG FT DNGGSSIRGYILQYSEDNSEQWGSFPISPSERSYRLENLKCGTWYKFTLTAQNGVGPGR FT ISEIIEAKTLGKEPQFSKEQELFASINTTRVRLNLIGWNDGGCPITSFTLEYRPFGTTV FT WTTAQRTSLSKSYILYDLQEATWYELQMRVCNSAGCAEKQANFATLNYDGSTIPPLIKS FT VVQSEEGLTTNEGLKILVTISCILVGVLLLFVLLLVVRRRRREQRLKRLRDAKSLAEML FT MSKNTRTSDTLSKQQQTLRMHIDIPRAQLLIEERDTMETIDDRSTVLLTDADFGEAAKQ FT KSLTVTHTVHYQSVSQATGPLVDVSDARPGTNPTTRRNAKAGPTARNRYASQWTLNRPH FT PTISAHTLTTDWRLPTPRATGSVDKESDSYSVSPSQDTDRARSSMVSTESASSTYEELA FT RAYEHAKMEEQLRHAKFTITECFISDTSSEQLTAGTNEYTDSLTSSTPSESGICRFTAS FT PPKPQDGGRVVNMAVPKAHRPGDLIHLPPYLRMDFLLNRGAPGTSRDLSLGQACLEPQK FT SRTLKRPTVLEPTPMEASSSTSSTREGQQSWQQGAVATLPQREGAELGQAAKMSSSQES FT LLDSRGHLKGNNPYAKSYTLV" XX SQ Sequence 6267 BP; 1643 A; 1763 C; 1604 G; 1257 T; 0 other; ccgggccggg cgcggcggag cgcagcgcag cgcggggggc gaggccggcg cgtggctcgc 60 tcgctggctc gctggctcgc gggaggccgg gcagcagcag gggcatgtgg atactggctc 120 tctccttgtt ccagagcttc gcgaatgttt tcagtgaaga gccccactcc agcctctact 180 ttgtcaatgc atcgctgcaa gaggtagtgt ttgcaagcac atcggggacg ctggtgccct 240 gcccggctgc aggcatccct cctgtgactc tcagatggta cctagcaacg ggcgaggaga 300 tctacgatgt ccccgggatc cgccacgtcc atcccaatgg cactctccaa attttcccct 360 ttcctccttc aagcttcagc accttaatcc atgataatac ttactattgc acagctgaaa 420 acccttcagg gaaaattaga agtcaggatg tccacatcaa ggctgtttta cgggagccct 480 atacagtccg tgtggaggac cagaaaacca tgagaggcaa tgtcgcggtg ttcaagtgca 540 ttatcccctc ctcggtggag gcgtacgtca ctgtcgtctc atgggagaaa gacacggttt 600 cacttgtctc aggatctaga tttctcatca catccacggg agccttgtat attaaagatg 660 tacagaacga agatgggctg tacaactacc gctgcatcac gcggcacaga tacacagggg 720 agacgagaca aagcaacagc gcgagactgt tcgtgtcaga cccagcaaac tcagccccat 780 ccatcctgga cgggtttgac caccgcaaag ccatggcagg gcagcgcgtg gagctgcctt 840 gcaaagcact tgggcacccc gagccagact accgctggct gaaggacaac atgcccctgg 900 aactttctgg aaggttccaa aagacagtga ctgggttgct cattgagaac agccgcccct 960 cagactcagg cagctatgtg tgtgaagtat ccaaccgata tggcactgcc aaggtgatag 1020 gccgcctgta cgtgaaacag ccactgaaag ccaccatcag tcccagaaag gttaaaagca 1080 gcgtgggcag ccaggtctcc ttatcctgca gtgtgacagg aaatgaagac caggaactct 1140 cctggtaccg aaatggcgaa atcctcaacc ctggaaaaaa cgtgaggatc acaggactca 1200 accacgcaaa ccttataatg gatcacatgg tcaagagtga tgggggtgcc taccagtgct 1260 ttgtgcgcaa ggacaagcta tctgctcaag actatgtcca ggtggtcctt gaagacggaa 1320 ctcccaaaat catttctgcc tttagcgaga aagtggtgag cccggcagag ccagtgtccc 1380 tcgtgtgcaa tgtgaagggt acacccttgc ccacggtcac ctggaccctg gacgatgacc 1440 ccatcctcaa gggcagcggt caccgcatca gccaaatgat cacgtccgag gggaacgtgg 1500 tcagctacct gaatatctcc agctcccagg tccgggatgg gggtgtctac cgctgcactg 1560 ccaacaactc ggctggagtc gtcctgtacc aggctcgaat aaacgtaaga gggcctgcaa 1620 gcatcagacc aatgaaaaac atcactgcga tagcggggcg tgacacgtac atccactgcc 1680 gcgtaattgg ctatccgtat tactccatca agtggtacaa gaacgctaac ctgcttcctt 1740 tcaaccaccg ccaggtggcg tttgagaaca atgggactct gaaactctct gatgtgcaga 1800 aagaagttga cgagggagag tacacgtgta atgtgctggt acagccacag ctctccacca 1860 gccagagtgt ccacgtgaca gtgaaagttc cacctttcat ccaacctttt gagttcccaa 1920 gattctccat cgggcagcgg gttttcatcc catgtgtggt ggtctcaggg gacttaccca 1980 tcaccatcac ctggcagaag gatggccggc caattccagc aagcctcgga gtaaccattg 2040 acaacattga cttcaccagc tccctgagga tctccaacct ctccctaatg cacaatggga 2100 attacacctg cattgcgaga aacgaggcag cagccgtgga acaccagagt cagctgattg 2160 tgagagttcc ccctaagttc gtggtacagc cccgggacca ggacgggatc tatggcaaag 2220 cagtgattct caattgctct gcagagggtt atcctgtgcc tacaattgtg tggaaattct 2280 caaaaggtgc tggggtcccc cagttccagc caattgcctt gaatggccga atccaggtcc 2340 tgagtaatgg ctcactcttg atcaagcatg ttgtagaaga agacagtggc tactacctct 2400 gcaaggtcag caacgatgtg ggcgcagacg tcagcaagtc catgtacctc acagtgaaaa 2460 ttcctgccat gataacctct taccccaaca ccaccctggc cactcagggt caaaggaagg 2520 aaatgagctg cacagcccat ggggagaagc ccatcattgt ccgctgggag aaagaggaca 2580 ggatcattaa ccctgaaatg gcccgctacc tggtatccac caaggaggtg ggagaggaag 2640 tgatatctac gctgcagatt ttgccaacag tgagagaaga ttccggtttc ttctcctgcc 2700 atgctatcaa ttcatacggg gaggaccgtg gaataattca actcacagtg caagaacccc 2760 cagatcctcc cgagattgag atcaaagatg tcaaagctcg caccatcacg ctcaggtgga 2820 ccatggggtt tgatggcaac agccccatca caggctatga cattgaatgc aaaaataaat 2880 cagactcctg ggattctgct caaagaacca aagatgtttc ccctcagctg aactcggcca 2940 ccatcattga tatccaccct tcctccacct acagcatccg catgtacgcc aagaaccgga 3000 ttggcaagag tgagcccagc aacgagatca ccatcacggc ggatgaggca gctcctgatg 3060 gtccacctca ggaagttcac ttggaaccca cctcatctca gagtatcagg gttacctgga 3120 aggctcccaa gaaacactta caaaacggga tcattcgcgg ctaccaaata ggctaccggg 3180 agtacagcac ggggggtaac ttccagttca acatcatcag tatcgacacc accggggaca 3240 gcgaagtgta caccctggac aacctgaata agttcacgca gtatggcctg gtagtacagg 3300 cttgcaaccg ggccggcaca ggaccttctt ctcaggagat cattaccacc actctggagg 3360 atgtacccag ctaccctcct gaaaatgtcc aagccatagc aacctcacca gaaagcatat 3420 caatctcctg gtccacactg tccaaggagg ccttgaatgg gattctccag gggttcaggg 3480 tcatctactg ggccaacctc atagacggag agctgggcga gattaagaac gtcaccacca 3540 cgcagccttc cttggagttg gatggactag agaaatacac caactacagt atccaggtcc 3600 tggccttcac ccgtgcaggg gatggcgtcc ggagcgagca gatctttacc cgtaccaagg 3660 aggacgttcc aggtcctcct gccggtgtca aggcggcggc agcctcggcc tccatggtct 3720 tcgtgtcctg gctgcccccg ctgaagctga acggcatcat tcggaagtac acagtgttct 3780 gctcccatcc ctaccctacc gtcatcagtg agtttgaagc ctcccctgac tcattttcct 3840 acagaatccc taatctgagt cggaatcggc agtatagcgt ctgggtggtg gcggtgactt 3900 ccgccggaag aggcaacagc agcgagatca tcactgtgga gcccctagct aaagctcctg 3960 cacggatcct cacgttcagc gggacagtga ctactccatg gatgaaggac attgtcttgc 4020 cttgtaaagc tgttggagac ccgtcacctg ccgtaaaatg gatgaaggat agtaacggga 4080 cacccagcct ggtgacgatt gatggccgca ggagcatctt cagcaatggg agtttcatca 4140 ttcggacggt gaaagcagag gactctggct attacagctg tgttgccaat aacaactggg 4200 gatcagatga gatcatatta aatttgcaag tacaagttcc accagatcag cctcggctca 4260 ccgtatccaa gacgacatcc tcctccatca ccctctcctg gctccctgga gataatgggg 4320 gtagctccat tagaggctac atcctgcaat actccgagga taacagtgag cagtggggca 4380 gctttcccat cagccccagc gagcgttcat accgcttgga aaacctaaag tgtgggactt 4440 ggtataagtt cacccttact gcccaaaatg gagtaggtcc cgggcgcata agtgaaatca 4500 tagaagccaa aaccctgggg aaagaacccc agttctccaa ggagcaggag ctcttcgcca 4560 gcatcaatac cacccgagtg aggctgaatc tgattggctg gaatgacggc ggctgtccaa 4620 tcacctcatt cactcttgaa tacagaccct ttgggaccac ggtctggacc acagctcagc 4680 ggacctccct ttccaagtcc tacattctgt atgacctgca agaagccacg tggtatgaac 4740 tgcagatgag agtgtgcaac agcgccggct gtgcggagaa gcaagccaac ttcgccacgc 4800 tgaactacga tggcagtaca atccctccac tcattaagtc agttgtccaa agcgaagaag 4860 ggctgacaac caacgaaggg ctcaagatcc tcgtgaccat ctcctgcatc ctggtcgggg 4920 ttctactgct ctttgtgctt ctgctggttg tgcggaggag acggcgagag cagaggctga 4980 agaggctgag agatgcaaag agtttagctg aaatgctcat gagcaaaaac acacggactt 5040 cagatacctt aagcaaacag cagcagactt tgagaatgca cattgatata cccagggctc 5100 agcttttgat tgaagagaga gacacaatgg agaccataga tgaccgctcc acagtcctgt 5160 tgacggatgc tgacttcggg gaggcagcca aacagaagtc actgacagtg actcacacgg 5220 tgcattacca atcggtgtct caggccaccg ggcccctcgt ggatgtctcc gatgctcggc 5280 caggaacgaa tcccaccacc aggaggaatg caaaggctgg acccacagcg agaaaccggt 5340 acgccagcca gtggacgctc aacagacccc atcctaccat ctctgcacac accctcacca 5400 cagactggag actgcctaca cccagggcta caggatccgt ggacaaggag agcgacagct 5460 acagcgtcag cccatcacaa gacacagacc gagcaagaag cagcatggtc tccacagaaa 5520 gtgcctcctc tacctacgaa gaactggcca gggcctatga acacgccaag atggaagagc 5580 agctgaggca tgccaagttc accatcacag agtgcttcat atccgatacg tcctccgagc 5640 agttgacggc agggacaaat gagtacacgg acagtctgac ctccagtacc ccttcagaat 5700 cggggatctg cagattcact gcatctcccc ccaaacctca ggatggagga cgagtggtga 5760 acatggcggt tccaaaggcc catcggccag gcgacctcat acacctgcct ccatacctac 5820 gaatggactt cttgttaaac cggggcgcac caggcaccag cagggacctg agtttaggac 5880 aagcgtgctt ggaaccccag aaaagtcgga ccctgaaacg ccccacggtc cttgagccca 5940 cccctatgga ggcctcctcc tccacctctt ccacgcgaga aggacagcag tcgtggcaac 6000 aaggggctgt ggccacctta cctcagcgag agggtgcaga gctgggacag gcagctaaaa 6060 tgagcagctc ccaagagtca ctgctggact cccggggcca tttgaaagga aacaatccct 6120 acgcaaaatc ttacaccttg gtataacaca tggcacctga tggacagcgg ttgtaaatac 6180 aatttaaacg agccaatcaa agctaccttt tttttactga attccgatat ttataattaa 6240 agaaaattgc caaaatatat taaaaaa 6267 // |
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