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EBI DbfetchID AF290949; SV 2; linear; genomic DNA; STD; PRO; 3963 BP. XX AC AF290949; XX DT 17-MAR-2001 (Rel. 67, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Pseudomonas putida FadB (fadB) and FadA (fadA) genes, complete cds. XX KW . XX OS Pseudomonas putida OC Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; OC Pseudomonadaceae; Pseudomonas. XX RN [1] RP 1-3963 RX DOI; 10.1046/j.1365-2958.2001.02296.x RX PUBMED; 11251808. RA Olivera E.R., Carnicero D., Garcia B., Minambres B., Moreno M.A., RA Canedo L., Dirusso C.C., Naharro G., Luengo J.M.; RT "Two different pathways are involved in the beta-oxidation of n-alkanoic RT and n-phenylalkanoic acids in Pseudomonas putida U: genetic studies and RT biotechnological applications"; RL Mol. Microbiol. 39(4):863-874(2001). XX RN [2] RP 1-3963 RA Olivera E.R., Garcia B., Minambres B., Carnicero D., Luengo J.M.; RT ; RL Submitted (31-JUL-2000) to the EMBL/GenBank/DDBJ databases. RL Bioquimica y Biologia Molecular, Universidad de Leon, Campus de Vegazana RL s/n, Leon 24007, Spain XX RN [3] RC Sequence update by submitter RP 1-3963 RA Olivera E.R., Garcia B., Minambres B., Carnicero D., Luengo J.M.; RT ; RL Submitted (12-JAN-2005) to the EMBL/GenBank/DDBJ databases. RL Bioquimica y Biologia Molecular, Universidad de Leon, Campus de Vegazana RL s/n, Leon 24007, Spain XX DR StrainInfo; 268696; U. XX CC On Jan 12, 2005 this sequence version replaced gi:13310122. XX FH Key Location/Qualifiers FH FT source 1..3963 FT /organism="Pseudomonas putida" FT /strain="U" FT /mol_type="genomic DNA" FT /db_xref="taxon:303" FT gene 607..2754 FT /gene="fadB" FT CDS 607..2754 FT /codon_start=1 FT /transl_table=11 FT /gene="fadB" FT /product="FadB" FT /note="enoyl-CoA hydratase; 3-OH-acyl-CoA dehydrogenase; FT cis-D3-trans-D2-enoyl-CoA isomerase; 3-OH-acyl-CoA FT epimerase" FT /db_xref="GOA:Q9AHY3" FT /db_xref="InterPro:IPR001753" FT /db_xref="InterPro:IPR006108" FT /db_xref="InterPro:IPR006176" FT /db_xref="InterPro:IPR006180" FT /db_xref="InterPro:IPR008927" FT /db_xref="InterPro:IPR012799" FT /db_xref="InterPro:IPR013328" FT /db_xref="InterPro:IPR016040" FT /db_xref="InterPro:IPR018376" FT /db_xref="UniProtKB/Swiss-Prot:Q9AHY3" FT /protein_id="AAK18167.2" FT /translation="MIYEGKAITVKALESGIVELKFDLKGESVNKFNRLTLNELRQAVD FT AIKADASVKGVIVSSGKDVFIVGADITEFVDNFKLPEAELVAGNLEANRIFSAFEDLEV FT PTVAAINGIALGGGLEMCLAADYRVMSTSAKIGLPEVKLGIYPGFGGTVRLPRLIGSDN FT AVEWIASGKENRAEDALKVGAVDAVVAPELLQAGALDLIKRAISGELDYKAKRQPKLEK FT LKLNAIEQMMAFETAKGFVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKL FT AKTSVAESLIGLFLNDQELKRKAKAHDEIAHDVKQAAVLGAGIMGGGIAYQSAVKGTPI FT LMKDIREEAIQLGLNEASKLLGNRVDKGRLTPAKMAEALNAIRPTLSYGDFANVDIVVE FT AVVENPKVKQAVLAEVEGQVKEDAILASNTSTISINLLAKALKRPENFVGMHFFNPVHM FT MPLVEVIRGEKSSEVAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSA FT GVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDERRSAVDALY FT EANRLGQKNGKGFYAYETDKRGKPKKVFDAAVLDVLKPIVFEQREVTDEDIINWMMVPL FT CLETVRCLEDGIVETAAEADMGLVYGIGFPPFRGGALRYIDSIGVAEFVALADQYADLG FT PLYHPTAKLREMAKNGQRFFN" FT gene 2786..3961 FT /gene="fadA" FT CDS 2786..3961 FT /codon_start=1 FT /transl_table=11 FT /gene="fadA" FT /product="FadA" FT /note="3-oxoacyl-CoA thiolase" FT /db_xref="GOA:Q9R9W0" FT /db_xref="InterPro:IPR002155" FT /db_xref="InterPro:IPR012805" FT /db_xref="InterPro:IPR016038" FT /db_xref="InterPro:IPR016039" FT /db_xref="InterPro:IPR020613" FT /db_xref="InterPro:IPR020615" FT /db_xref="InterPro:IPR020616" FT /db_xref="InterPro:IPR020617" FT /db_xref="UniProtKB/Swiss-Prot:Q9R9W0" FT /protein_id="AAK18168.1" FT /translation="MSLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLER FT NDKVDPKEVEDVIWGCVNQTLEQGWNIARMASLMTPIPHTSAAQTVSRLCGSSMSALHT FT AAQAIMTGNGDVFVIGGVEHMGHVSMMHGVDPNPHLSLHAAKASGMMGLTAEMLGKMHG FT ITREQQDLFGVRSHQLAHKATVEGKFKDEIIPMQGYDENGFLKVFDFDETIRPETTLEG FT LASLKPAFNPKGGTVTAGTSSQITDGASCMIVMSGQRAMDLGIQPLAVIRSMAVAGVDP FT AIMGYGPVPSTQKALKRAGLTMADIDFIELNEAFAAQALPVLKDLKVLDKMDEKVNLHG FT GAIALGHPFGCSGARISGTLLNVMKQNGGTLGVATMCVGLGQGITTVFERV" XX SQ Sequence 3963 BP; 820 A; 1195 C; 1223 G; 725 T; 0 other; gatcgccctg tactggactg aacggggtga tacggctgtg ttgcaggatg ttgcctacgt 60 cctcaaaacc ctggcttgaa ccccggggcc acctcctaca ggtgcggcgt aggcgttcag 120 ggctttaaac gacaaagcgg cggcttggca gaaccctgaa ggggtggggt gccaagtcgc 180 cgctttgcgt tctgctgcgc agaaaaggcc aggcaggccg ggtattcact caagcaggtg 240 gcagtgtatc cgccttgggt tgccgcgcaa gtcgaaagtc gcagcgttat tcaatcggcc 300 gtggtcaatc gctgacatga atggtcggcg atcactgtca tcatgttttg tacccagacg 360 atacaaagtg accggaaagt cgcgttttcg ccatgctcgt gagcatttga caacgccgat 420 cttttcggag aatgtgtgca cacccaaatc aaacgggcgt atgaattgag cgtttgtatg 480 tcatgacgcc aagccatact tccgactagc gcgctgacgg gtgtgcctgg ggcagggcag 540 ctaggcctgc ttctgctgca gcgatcggcg tgtacagttc agcttccata tcgtggagat 600 cagttgatga tttacgaagg taaagccatc acggttaagg ctcttgaaag tggcatcgtc 660 gagctcaagt tcgacctcaa gggtgagtcc gtcaacaagt tcaaccgcct gaccctgaac 720 gagcttcgcc aggccgtcga tgccatcaag gccgacgcct cggtcaaggg cgttatcgtc 780 agcagtggca aggacgtgtt catcgtcggc gccgacatca ccgagttcgt cgacaacttc 840 aagctgcccg aggccgaact ggtcgccggc aacctggaag ccaaccgcat cttcagcgcc 900 ttcgaagacc tcgaagtgcc gaccgttgcg gccatcaacg gcatcgccct gggcggcggc 960 ctggagatgt gcctggccgc cgactaccgg gtcatgtcca ccagcgccaa gatcggcctg 1020 ccagaagtca agctgggcat ctaccccggc tttggcggca ccgtacgcct gccgcgcctg 1080 atcggttcgg acaacgctgt cgagtggatc gcttccggca aggaaaaccg tgccgaagac 1140 gccctgaaag tgggtgccgt cgacgccgtg gtcgcccctg agttgctgca ggccggtgcc 1200 ctggacctga tcaagcgcgc catcagtggc gagctggact acaaggccaa gcgccagccc 1260 aagctggaaa agctcaagct caatgccatc gagcagatga tggccttcga gaccgccaag 1320 ggcttcgttg ccggccaggc cggcccgaac tacccggccc cggtcgaagc catcaagacc 1380 atccagaaag ccgccaactt cggccgcgac aaggccttgg aagtcgaagc cgcaggcttt 1440 gccaagctgg ccaagacgtc ggttgccgaa agcctgatcg gtctgttcct gaacgaccag 1500 gaactcaagc gcaaggccaa ggcgcatgac gagatcgccc atgacgtgaa gcaggccgcc 1560 gtgctcggcg ccggcatcat gggtggcggc atcgcttacc agtctgcggt caaaggcacc 1620 ccgatcctga tgaaggacat tcgcgaggaa gccattcagc tgggcctgaa cgaagcctcc 1680 aagctgctcg gcaaccgcgt cgacaagggt cgcctgaccc cggccaagat ggccgaggcg 1740 ctcaacgcca ttcgcccgac cctgtcctat ggcgatttcg ccaatgtcga catcgtcgtc 1800 gaagccgtgg tcgagaaccc gaaagtgaag caggccgtgc tggccgaggt ggaaggccag 1860 gtgaaagagg atgcgatcct tgcgtccaac acctcgacca tctccatcaa cctgctggca 1920 aaagcgctca agcgcccgga aaacttcgtc ggcatgcact tcttcaaccc ggtgcacatg 1980 atgccgctgg tggaagtgat ccgtggcgag aagtccagtg aagtggcggt cgccaccacc 2040 gtggcctacg ccaagaaaat gggcaagaac ccgatcgtgg tcaacgattg cccgggcttt 2100 ttggtcaacc gcgtgctgtt cccgtatttt ggcggctttg ccaagctggt cagtgccggt 2160 gtcgacttcg tgcgcatcga caaggtcatg gaaaaattcg gctggccgat gggcccagcc 2220 tacctgatgg acgtggtcgg catcgacacc ggccaccacg ggcgtgacgt gatggccgaa 2280 ggcttcccgg accgcatgaa ggacgagcgc cgctcggccg tcgacgcgct gtacgaggcg 2340 aaccgcctgg gccagaagaa cggcaagggc ttctatgcct acgaaaccga caagcgcggc 2400 aagccgaaga aagtcttcga cgccgccgtg ctggacgtgc tcaagccgat cgtgttcgaa 2460 cagcgcgaag tcaccgacga agacatcatc aactggatga tggtcccgct gtgcctggag 2520 accgtgcgct gcctggaaga cggcattgtc gaaaccgccg ccgaagccga catgggcctg 2580 gtgtatggca ttggtttccc tcccttccgc ggtggtgcgc tgcgttacat cgactcgatc 2640 ggtgtggccg aattcgtcgc cctggccgat cagtacgccg atctggggcc gctgtaccac 2700 ccgactgcga agctgcgtga aatggccaag aacggccagc gcttcttcaa ctgagcggtc 2760 aacgagctag agcgagagat ttgatatgag cctgaatcca agagacgtgg tgattgtcga 2820 cttcggtcgc acgccaatgg gccgctccaa gggtggcatg caccgcaata cccgcgccga 2880 ggacatgtcg gcgcacctga tcagcaagct gctggagcgt aacgacaagg tcgacccgaa 2940 ggaagtcgag gacgtgatct ggggctgcgt caaccagacc ctggagcagg ggtggaacat 3000 cgcccgcatg gcgtcgctga tgaccccgat cccgcacact tctgcagcgc agaccgtcag 3060 ccgcctgtgc ggctcgtcga tgagcgcact gcacaccgct gcccaggcga tcatgaccgg 3120 taacggcgat gtgttcgtga ttggcggggt ggagcacatg ggccacgtca gcatgatgca 3180 cggcgtcgac cccaacccgc acctgtcctt gcatgcagcc aaggcttccg ggatgatggg 3240 cctgactgcg gaaatgctcg gcaagatgca cggcatcacc cgtgagcagc aggacctgtt 3300 cggcgtgcgt tcgcaccagt tggcccacaa ggccacggtc gaaggcaagt tcaaggacga 3360 gatcatcccg atgcagggct atgacgagaa cggcttcctg aaggtgttcg atttcgacga 3420 aaccattcgc ccggaaacca ccctcgaagg cctggcgtcg ctcaagcccg cgtttaaccc 3480 gaaaggcggt accgtcactg ccggtacctc gtcgcagatc accgacggcg cttcgtgcat 3540 gatcgtcatg tccggccagc gtgcgatgga cctgggtatc cagccattgg cggtgatccg 3600 ttcgatggcg gtggccggtg tcgatccggc gatcatgggt tatggcccgg tgccgtcgac 3660 ccaaaaagcc ctcaagcgcg ccgggctgac catggccgac atcgacttca tcgagctcaa 3720 cgaagccttt gctgcacagg ccttgccagt gctgaaagac ttgaaagtgc tcgacaagat 3780 ggatgagaag gttaacctgc acggcggcgc cattgctttg ggccacccgt tcggttgctc 3840 cggggcacgt atttcgggca ccctgctcaa cgtcatgaag cagaatggcg gtaccctggg 3900 ggtggcgacc atgtgcgtcg gcctcggtca aggtatcacc actgtctttg aacgcgtctg 3960 atc 3963 // |
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