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EBI DbfetchID AF254574; SV 1; linear; genomic RNA; STD; VRL; 6578 BP. XX AC AF254574; XX DT 24-MAY-2000 (Rel. 63, Created) DT 12-APR-2001 (Rel. 67, Last updated, Version 2) XX DE Human respiratory syncytial virus M2 gene, partial sequence; and polymerase DE L gene, complete cds. XX KW . XX OS Human respiratory syncytial virus OC Viruses; ssRNA negative-strand viruses; Mononegavirales; Paramyxoviridae; OC Pneumovirinae; Pneumovirus. XX RN [1] RP 1-6578 RA Martinez L., Delgado T., Melero J., Garcia-Barreno B.; RT "Human repiratory syncytial virus phosphoprotein plays a central role in RT the interaction of ribonucleoprotein components and modulates the RT phosphorylated state of the 22k transcriptional anti-terminator"; RL Unpublished. XX RN [2] RP 1-6578 RA Garcia-Barreno B., Delgado T., Melero J.; RT ; RL Submitted (10-APR-2000) to the EMBL/GenBank/DDBJ databases. RL Biologia Viral, Instituto de Salud Carlos III, Carretera de RL Majadahonda-Pozuelo, km 2.2, Majadahonda, Madrid 28220, Spain XX FH Key Location/Qualifiers FH FT source 1..6578 FT /organism="Human respiratory syncytial virus" FT /strain="Long" FT /mol_type="genomic RNA" FT /clone="LL2" FT /db_xref="taxon:11250" FT mRNA 1..6578 FT /gene="M2" FT /product="polymerase L" FT CDS 9..6506 FT /codon_start=1 FT /gene="M2" FT /product="polymerase L" FT /db_xref="GOA:Q9IWW8" FT /db_xref="InterPro:IPR001016" FT /db_xref="InterPro:IPR014023" FT /db_xref="UniProtKB/Swiss-Prot:Q9IWW8" FT /protein_id="AAF71286.1" FT /translation="MDPIINGNSANVYLTDSYLKGVISFSECNALGSYIFNGPYLKNDY FT TNLISRQNPLIEHMNLKKLNITQSLISKYHKGEIKLEEPTYFQSLLMTYKSMTSLEQIA FT TTNLLKKIIRRAIEISDVKVYAILNKLGLKEKDKIKSNNGQDEDNSVITTIIKDDILSA FT VKDNQSHLKADKNHSTKQKDTIKTTLLKKLMCSMQHPPSWLIHWFNLYTKLNNILTQYR FT SNEVKNHGFILIDNQTLSGFQFILNQYGCIVYHKELKRITVTTYNQFLTWKDISLSRLN FT VCLITWISNCLNTLNKSLGLRCGFNNVILTQLFLYGDCILKLFHNEGFYIIKEVEGFIM FT SLILNITEEDQFRKRFYNSMLNNITDAANKAQKNLLSRVCHTLLDKTVSDNIINGRWII FT LLSKFLKLIKLAGDNNLNNLSELYFLFRIFGHPMVDERQAMDAVKVNCNETKFYLLSSL FT SMLRGAFIYRIIKGFVNNYNRWPTLRNAIVLPLRWLTYYKLNTYPSLLELTERDLIVLS FT GLRFYREFRLPKKVDLEMIINDKAISPPKNLIWTSFPRNYMPSHIQNYIEHEKLKFSES FT DKSRRVLEYYLRDNKFNECDLYNCVVNQSYLNNPNHVVSLTGKERELSVGRMFAMQPGM FT FRQVQILAEKMIAENILQFFPESLTRYGDLELQKILELKAGISNKSNRYNDNYNNYISK FT CSIITDLSKFNQAFRYETSCICSDVLDELHGVQSLFSWLHLTIPHVTIICTYRHAPPYI FT RDHNVDLNNVDEQSGLYRYHMGGIEGWCQKLWTIEAISLLDLISLKGKFSITALINGDN FT QSIDISKPVRLMEGQTHAQADYLLALNSLKLLYKEYAGIGHKLKGTETYISRDMQFMSK FT TIQHNGVYYPASIKKVLRVGPWINTILDDFKVSLESIGSLTQELEYRGESLLCSLIFRN FT VWLYNQIALQLKNHALCNNKLYLDILKVLKHLKTFFNLDNIDTALTLYMNLPMLFGGGD FT PNLLYRSFYRRTPDFLTEAIVHSVFILSYYTNHDLKDKLQDLSDDRLNKFLTCIITFDK FT NPNAEFVTLMRDPQALGSERQAKITSEINRLAVTEVLSTAPNKIFSKSAQHYTTTEIDL FT NDIMQNIEPTYPHGLRVVYESLPFYKAEKIVNLISGTKSITNILEKTSAIDLTDIDRAT FT EMMRKNITLLIRILPLDCNRDKREILSMENLSITELSKYVRERSWSLSNIVGVTSPSIM FT YTMDIKYTTSTIASGIIIEKYNVNSLTRGERGPTKPWVGSSTQEKKTMPVYNRQVLTKK FT QRDQIDLLAKLDWVYASIDNKDEFMEELSIGTLGLTYEKAKKLFPQYLSVNYLHRLTVS FT SRPCEFPASIPAYRTTNYHFDTSPINRILTEKYGDEDIDIVFQNCISFGLSLMSVVEQF FT TNVCPNRIILIPKLNEIHLMKPPIFTGDVDIHKLKQVIQKQHMFLPDKISLTQYVELFL FT SNKTLKSGSHVNSNLILAHKISDYFHNTYILSTNLAGHWILIIQLMKDSKGIFEKDWGE FT GYITDHMFINLKVFFNAYKTYLLCFHKGYGKAKLECDMNTSDLLCVLELIDSSYWKSMS FT KVFLEQKVIKYILSQDASLHRVKGCHSFKLWFLKRLNVAEFTVCPWVVNIDYHPTHMKA FT ILTYIDLVRMRLINIDRIHIKNKHKFNDEFYTSNLFYINYNFSDNTHLLTKHIRIANSE FT LENNYNKLYHPTPETLENILANPIKSNDKKTLNDYCIGKNVDSIMLPLLSNKKLVKSSA FT MIRTNYSKQDLYNLFPTVVIDRIIDHSGNTAKYNQLYTTTSHQISLVHNSTSLYCMLPW FT HHINRFNFVFSSTGCKISIEYILKDLKIKDPNCIAFIGEGAGNLLLRTVVELHPDIRYI FT YRSLKDCNDHSLPIEFLRLYNGHINIDYGENLTIPATDATNNIHWSYLHIKFAEPISLF FT VCDAELPVTVNWSKIIIEWSKHVRKCKYCSSVNKCTLIVKYHAQDDIDFKLDNITILKT FT YVCLGSKLKGSEVYLVLTIGPANIFPVFNVVQNAKLILSRTKNFIMPKKADKESIDANI FT KSLIPFLCYPITKKGINTALSKLKSVVSGDILSYSIAGRNEVFSNKLINHKHMNILKWF FT NHVLNFRSTELNYNHLYMVESTYPYLSELLNSLTTNELKKLIKITGSLLYNFHNE" XX SQ Sequence 6578 BP; 2505 A; 980 C; 1040 G; 2053 T; 0 other; gggacaaaat ggatcccatt attaatggaa attctgctaa tgtttatcta accgatagtt 60 atttaaaagg tgttatctct ttctcagagt gtaatgcttt aggaagttac atattcaatg 120 gtccttatct caaaaatgat tataccaact taattagtag acaaaatcca ttaatagaac 180 acatgaatct aaagaaacta aatataacac agtccttaat atctaagtat cataaaggtg 240 aaataaaatt agaagagcct acttattttc agtcattact tatgacatac aagagtatga 300 cctcgttgga acagattgct accactaatt tacttaaaaa gataataaga agagctatag 360 aaataagtga tgtcaaagtc tatgctatat tgaataaact agggcttaaa gaaaaggaca 420 agattaaatc caacaatgga caggatgaag acaactcagt tattacgacc ataatcaaag 480 atgatatact ttcagctgtt aaggataatc aatctcatct taaagcagac aaaaatcact 540 ctacaaagca aaaagacaca atcaaaacaa cactcttgaa gaaattaatg tgttcaatgc 600 agcatcctcc atcatggtta atacattggt ttaatttata cacaaaatta aacaacatat 660 taacacagta tcgatcaaat gaggttaaaa accatgggtt catattgata gataatcaaa 720 ctcttagtgg atttcaattt attttgaatc aatatggttg tatagtttat cataaggaac 780 tcaaaagaat tactgtgaca acctataatc aattcttgac atggaaagat attagcctta 840 gtagattaaa tgtttgttta attacatgga ttagtaactg cttgaacaca ttaaataaaa 900 gcttaggctt aagatgcgga ttcaataatg ttatcttgac acaactattc ctttatggtg 960 attgtatact aaagctattt cacaatgagg ggttctacat aataaaagag gtagagggat 1020 ttattatgtc tctaatttta aatataacag aagaagatca attcagaaaa cgattttata 1080 atagtatgct caacaacatc acagatgctg ctaataaagc tcagaaaaat ctgctatcaa 1140 gagtatgtca tacattatta gataagacag tatccgataa tataataaat ggcagatgga 1200 taattctatt aagtaagttc cttaaattaa ttaagcttgc aggtgacaat aaccttaaca 1260 atctgagtga actatatttt ttgttcagaa tatttgggca cccaatggta gatgaaagac 1320 aagccatgga tgctgttaaa gttaattgca atgagaccaa attttacttg ttaagcagtt 1380 tgagtatgtt aagaggtgcc tttatatata gaattataaa agggtttgta aataattaca 1440 acagatggcc tactttaaga aatgctattg ttttaccctt aagatggtta acttactata 1500 aactaaacac ttatccttct ttgttggaac ttacagaaag agatttgatt gtgttatcag 1560 gactacgttt ctatcgtgag tttcggttgc ctaaaaaagt ggatctcgaa atgattataa 1620 atgataaagc tatatcaccc cctaaaaatt tgatatggac tagtttccct agaaattata 1680 tgccgtcaca catacaaaac tatatagaac atgaaaaatt aaaattttcc gagagtgata 1740 aatcaagaag agtattagag tattatttaa gagataacaa attcaatgaa tgtgatttat 1800 acaactgtgt agttaatcaa agttatctca acaaccctaa tcatgtggta tcattgacag 1860 gcaaagaaag agaactcagt gtaggtagaa tgtttgcaat gcaaccggga atgttcagac 1920 aggttcaaat attggcagag aaaatgatag ctgaaaacat tttacaattc tttcctgaaa 1980 gtcttacaag atatggtgat ctagaactac aaaaaatatt agaattgaaa gcaggaataa 2040 gtaacaaatc aaatcgctac aatgataatt acaacaatta cattagtaag tgctctatca 2100 tcacagatct cagcaaattc aatcaagcat ttcgatatga aacgtcatgt atttgtagtg 2160 atgtgctgga tgaactgcat ggtgtacaat ctctattttc ctggttacat ttaactattc 2220 ctcatgtcac aataatatgc acatataggc atgcaccccc ctatataaga gatcataatg 2280 tagatcttaa caatgtagat gaacaaagtg gattatatag atatcacatg ggtggtattg 2340 aagggtggtg tcaaaaacta tggaccatag aagctatatc actattggat ctaatatctc 2400 tcaaagggaa attctcaatt actgctttaa ttaatggtga caatcaatca atagatataa 2460 gcaaaccagt cagactcatg gaaggtcaaa ctcatgctca agcagattat ttgctagcat 2520 taaatagcct taaattactg tataaagagt atgcaggcat aggtcacaaa ttaaaaggaa 2580 ctgagactta tatatcacga gatatgcaat ttatgagtaa aacaattcaa cataacggtg 2640 tatattaccc tgctagtata aagaaagtcc taagagtggg accgtggata aacactatac 2700 ttgatgattt caaagtgagt ctagaatcta taggtagttt gacacaagaa ttagaatata 2760 gaggtgaaag tctattatgc agtttaatat ttagaaatgt atggttatat aatcaaattg 2820 ctctacaatt aaaaaatcat gcgttatgta acaataaatt atatttggac atattaaagg 2880 ttctgaaaca cttaaaaacc ttttttaatc ttgataatat tgatacagca ttaacattgt 2940 atatgaattt acccatgtta tttggtggtg gtgatcccaa cttgttatat cgaagtttct 3000 atagaagaac tcctgatttc ctcacagagg ctatagttca ctctgtgttc atacttagtt 3060 attatacaaa ccatgactta aaagataaac ttcaagattt gtcagatgat agattgaata 3120 agttcttaac atgcataatc acgtttgaca aaaaccctaa tgctgaattc gtaacattga 3180 tgagagatcc tcaagcttta gggtctgaga gacaagctaa aattactagt gaaatcaata 3240 gactggcagt tacagaggtt ttgagtacag ctccaaacaa aatattctcc aaaagtgcac 3300 aacattatac cactacagag atagatctaa atgatattat gcaaaatata gaacctacat 3360 atcctcacgg gctaagagtt gtttatgaaa gtttaccctt ttataaagca gagaaaatag 3420 taaatcttat atcaggtaca aaatctataa ctaacatact ggaaaagact tctgccatag 3480 acttaacaga tattgataga gccactgaga tgatgaggaa aaacataact ttgcttataa 3540 ggatacttcc attggattgt aacagagata aaagagaaat attgagtatg gaaaacctaa 3600 gtattactga attaagcaaa tatgttaggg aaagatcttg gtctttatcc aatatagttg 3660 gtgttacatc acccagtatc atgtatacaa tggacatcaa atatacaaca agcactatag 3720 ctagtggcat aattatagag aaatataatg ttaacagttt aacacgtggt gagagaggac 3780 caactaaacc atgggttggt tcatctacac aagagaaaaa aacaatgcca gtttataata 3840 gacaagtttt aaccaaaaaa caaagagatc aaatagatct attagcaaaa ttggattggg 3900 tgtatgcatc tatagataac aaggatgaat tcatggaaga actcagcata ggaacccttg 3960 ggttaacata tgaaaaggcc aaaaaattat ttccacaata tttaagtgtc aactatttgc 4020 atcgccttac agtcagtagt agaccatgtg aattccctgc atcaatacca gcttatagaa 4080 caacaaatta tcactttgac actagcccta ttaatcgcat attaacagaa aagtatggtg 4140 atgaagatat tgacatagta ttccaaaact gtataagctt tggccttagc ttaatgtcag 4200 tagtagaaca atttactaat gtatgtccta acagaattat tctcatacct aagcttaatg 4260 agatacattt gatgaaacct cccatattca caggtgatgt tgatattcac aagttaaaac 4320 aagtgataca aaaacagcat atgtttttac cagacaaaat aagtttgact caatatgtgg 4380 aattattctt aagtaacaaa acactcaaat ctggatctca tgttaattct aatttaatat 4440 tagcacataa aatatctgac tattttcata atacttacat tttaagtact aatttagctg 4500 gacattggat tctaattata caacttatga aagattctaa aggtattttt gaaaaagatt 4560 ggggagaggg atatataact gatcatatgt ttattaattt gaaagttttc ttcaatgctt 4620 ataagaccta tctcttgtgt tttcataaag gttatggcaa agcaaaactg gagtgtgata 4680 tgaacacttc agatcttcta tgtgtattgg aattaataga cagtagttat tggaagtcta 4740 tgtctaaggt atttttagaa caaaaagtta tcaaatacat tcttagccaa gatgcaagtt 4800 tacatagagt aaaaggatgt catagcttca aattatggtt tcttaaacgt cttaatgtag 4860 cagaatttac agtttgccct tgggttgtta acatagatta tcatccaaca catatgaaag 4920 caatattaac ttatatagat cttgttagaa tgagattgat aaatatagat agaatacaca 4980 ttaaaaataa acacaaattc aatgatgaat tttatacttc taatctcttt tacattaatt 5040 ataacttctc agataatact catctattaa ctaaacatat aaggattgct aattcagaat 5100 tagaaaataa ttacaacaaa ttatatcatc ctacaccaga aaccctagag aatatactag 5160 ccaatccgat taaaagtaat gacaaaaaga cactgaacga ctattgtata ggtaaaaatg 5220 ttgactcaat aatgttacca ttgttatcta ataagaagct tgttaaatcg tctgcaatga 5280 ttagaaccaa ttacagcaaa caagacctgt acaatctatt ccctacggtt gtgatcgata 5340 gaattataga tcattcaggt aatacagcca aatacaacca actttacact actacttccc 5400 atcaaatatc tttagtgcac aatagcacat cactttattg catgcttcct tggcatcata 5460 ttaatagatt caattttgta tttagttcta caggttgtaa aattagtata gagtatattt 5520 taaaagacct taaaattaaa gatcctaatt gtatagcatt cataggtgaa ggagcaggga 5580 atttattatt gcgtacagtg gtggaacttc atcctgacat aagatatatt tacagaagtc 5640 tgaaagattg caatgatcat agtttaccta ttgagttttt aaggctatac aatggacata 5700 tcaacattga ttatggtgaa aatttgacca ttcctgctac agatgcaacc aacaacattc 5760 attggtctta tttacatata aagtttgctg aacctatcag tctttttgta tgtgatgccg 5820 aattgcctgt aacagtcaac tggagtaaaa ttataataga atggagcaag catgtaagaa 5880 aatgcaagta ctgttcctca gttaataaat gtacgttaat agtaaaatat catgctcaag 5940 atgatattga tttcaaatta gacaatataa ctatattaaa aacttatgta tgcttaggca 6000 gtaagttaaa gggatcggag gtttacttag tccttacaat aggtcctgca aatatatttc 6060 cagtatttaa tgtagtacaa aatgctaaat tgatactatc aagaaccaaa aatttcatca 6120 tgcctaagaa agctgataaa gagtctattg atgcaaatat taaaagtttg ataccctttc 6180 tttgttaccc tataacaaaa aaaggaatta atactgcatt gtcaaaacta aagagtgttg 6240 ttagtggaga tatactatca tattctatag ctggacggaa tgaagttttc agcaataaac 6300 ttataaatca taagcatatg aacatcttaa agtggttcaa tcatgtttta aatttcagat 6360 caacagaact aaactataac catttatata tggtagaatc tacatatcct tacctaagtg 6420 aattgttaaa cagcttgaca actaatgaac ttaaaaaact gattaaaatc acaggtagtc 6480 tgttatacaa ctttcataat gaataatgaa taaagatctt ataataaaaa ttcctatagc 6540 tatacactag cactgtattc aattatagtt attaaaaa 6578 // |
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