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EBI DbfetchID AF238861; SV 1; linear; genomic DNA; STD; PRO; 3007 BP. XX AC AF238861; XX DT 25-AUG-2000 (Rel. 64, Created) DT 25-AUG-2000 (Rel. 64, Last updated, Version 1) XX DE Lactobacillus rhamnosus exopolysaccharide gene cluster, partial sequence. XX KW . XX OS Lactobacillus rhamnosus OC Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. XX RN [1] RP 1-3007 RA Grimaldi C., Dutertre M., Simonet J.M.; RT ; RL Submitted (24-FEB-2000) to the EMBL/GenBank/DDBJ databases. RL Institut de Genetique et Microbiologie, Universite Paris-Sud Orsay, RL Bat.360, Orsay Cedex 91 405, France XX FH Key Location/Qualifiers FH FT source 1..3007 FT /organism="Lactobacillus rhamnosus" FT /strain="X202" FT /mol_type="genomic DNA" FT /note="mucoid strain" FT /db_xref="taxon:47715" FT CDS <1..606 FT /codon_start=1 FT /transl_table=11 FT /gene="epsA" FT /product="putative glycosyltransferase" FT /note="similar to glycosyltransferases implicated in FT exopolysaccharide biosynthesis" FT /db_xref="GOA:Q9FDJ7" FT /db_xref="InterPro:IPR001173" FT /db_xref="UniProtKB/TrEMBL:Q9FDJ7" FT /protein_id="AAG01981.1" FT /translation="VVEKLSATDSRITYIKLDENQGVANARNVGVQHSRGEYVAFLDSD FT DIWLPDKLKIQLTFMQQHQVDFSYCSYEVVDDHGTKIGERKISETKLDYHEMLKGNRIG FT LLTVMLSRKITQKYPFPEINHEDYACWLSIARNGTVAYLASEQILAKYRKHQTSLSANK FT IQAAQWTWTIYRRHEHLGLFKSFYYFLHYSLMGLTDKR" FT CDS 629..1369 FT /codon_start=1 FT /transl_table=11 FT /gene="epsB" FT /product="hypothetical protein" FT /note="similar to Streptococcus pneumoniae Cap8J protein FT encoded by GenBank Accession Number AJ239004, which belongs FT to a gene cluster implicated in capsular polysaccharide FT biosynthesis" FT /db_xref="InterPro:IPR007577" FT /db_xref="UniProtKB/TrEMBL:Q9FDJ6" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="AAG01982.1" FT /translation="MIPKIIHYAWFGTTPPPFIEARVNEWRTQLPDWEFKFWNDKNFDL FT SKYAFSEKMYQAGKLGYAADELRYAVLYQYGGFYLDTDMIVKKDLAPFLNQKMVWGFQY FT DNSILTSFIGAESKTPLLAEILDVYAGRKFADLQDDMQKMTSNPVVTKILMRLYPDFRM FT NGQRQELAPGITVYPRDYFTYASRNSNANYMEHLFDNSWGSANLGMRGRLKHAFKTVFP FT YLWADISARRGIKSAERDGIPYQR" FT CDS 1487..2887 FT /codon_start=1 FT /transl_table=11 FT /gene="epsC" FT /product="putative glycosyltransferase" FT /note="similar to glycosyltransferases implicated in the FT first step of exopolysaccharide subunit biosynthesis" FT /db_xref="GOA:Q9FDJ5" FT /db_xref="InterPro:IPR003362" FT /db_xref="UniProtKB/TrEMBL:Q9FDJ5" FT /protein_id="AAG01983.1" FT /translation="MKQSAEWNGFKRLLTMIGDVGLFNLSILLAFYWRFGSDIPEWNFK FT MYEGSAVYISLLFLLVNFFLGVYVYYNRRISDIIFNTVLAQTITILGLTMITFMGRFFA FT FPRLVLAYSFLLSILILGIWRVFIYYMYIHFTSNYKVAVLSYEHELPAVLENFHSAKNN FT KHKVTYVVSDHFVENAKKIIDKVDIFYLTKSLPDEQRREIIDIIIKKEKTILLPSTFDN FT LMMLRPNLMNFEDESVMGITQFRIKPESAILKRIFDIVVGLLMLVVASPFMLVTAILVK FT LSSPGPIIYKQTRITLNQKEFKILKFRTMSATAEAKSGPVLAKAHDSRITPVGKYLRKF FT RLDELPQIFNVLKGDMSIVGPRPERPYFVDQFNQQEPHYYLRHNVRAGITGYAQVYGKY FT ASDYHSKLKFDLLYIKTYSIFLDARILLQTIKILFDKVSSQGLEEDTEPERQKLHDLVV FT QQDITHLS" XX SQ Sequence 3007 BP; 859 A; 563 C; 664 G; 921 T; 0 other; gtggtggaaa aattgtccgc tacagatagc cgcattacct atattaaact agacgagaac 60 caaggtgtgg cgaatgcacg caatgtcggg gttcagcatt ctagaggcga gtatgttgcc 120 tttttagata gtgatgacat atggctacca gataagttga agattcaatt aacgtttatg 180 cagcagcatc aggttgattt ttcctattgt tcctatgaag ttgtggacga tcatggtaca 240 aaaattggtg agcgcaaaat ctcagaaaca aaattggact atcatgaaat gctgaaggga 300 aatcgaattg gattgttgac agtgatgcta tcacgtaaaa ttactcaaaa gtatccgttt 360 cccgagatta atcatgaaga ttatgcttgt tggctatcga ttgcccgcaa tggcacggtt 420 gcttaccttg catccgagca aattctcgct aaatatcgga agcatcagac ttcattaagc 480 gcaaataaaa ttcaggctgc ccaatggact tggacaatct atcgtcgcca cgagcacttg 540 ggtttattta aaagcttcta ttactttctc cattactcgt taatgggcct caccgataaa 600 agataacaat cagaaaagga gaagcgttat gattcctaaa attatccatt atgcttggtt 660 tggaacgacg ccaccgccat ttattgaagc gcgcgttaac gagtggcgaa cacaacttcc 720 tgattgggag tttaagtttt ggaacgataa gaattttgac ttaagcaagt atgcattttc 780 ggaaaaaatg tatcaggcgg gcaaactggg ttatgcggcc gatgaattgc ggtacgcagt 840 tttgtaccaa tacggcggtt tttatttgga taccgatatg attgtcaaga aggaccttgc 900 gccgtttttg aatcaaaaaa tggtatgggg atttcagtat gataatagta tcctaacgtc 960 ttttataggt gcagagtcca aaacaccgct gttagctgag attttagatg tatacgcagg 1020 tcggaagttt gcggatttac aagatgacat gcagaaaatg accagtaatc ctgttgtcac 1080 gaaaatcctg atgcgtttat accccgattt tcggatgaac ggtcagcgtc aggaattggc 1140 gccgggaatt acggtttatc cgcgcgatta ctttacatat gccagtcgta actcaaatgc 1200 aaactatatg gagcatcttt ttgataattc atggggtagt gctaatttgg gcatgcgtgg 1260 gcgcttgaaa catgcattta aaaccgtttt cccatattta tgggctgaca tttctgcgcg 1320 acgaggtata aaaagtgctg agcgtgatgg gataccttat caacgctgag aggccgttgt 1380 tgggtgtttc cacgataaat gaccgacatg gcggacattt tctgtacgta tgctataatg 1440 agtgagcttg ttttagacca aagatattta ttgagagggt tgctgtatga aacagagtgc 1500 cgaatggaat ggcttcaaac ggctgttaac aatgatcggc gacgtcggtc tttttaattt 1560 aagtatatta ctcgcctttt actggcggtt tggatctgat attcctgagt ggaactttaa 1620 aatgtatgaa ggatcggcag tctatatctc gctgcttttt ctactggtta atttcttctt 1680 aggcgtttat gtttattata atcggcgaat tagtgacatt atttttaaca cggtccttgc 1740 ccagacaatc acgatattgg gactaactat gattacgttt atggggcgtt tcttcgcttt 1800 tccaagacta gtcttagctt attctttcct gctcagcatt ttgattttgg gcatttggcg 1860 agtgttcatc tactacatgt atattcactt tacaagtaat tacaaagtag cagtgttgtc 1920 ttatgaacat gaattacctg ctgttttaga gaacttccat tcagcaaaga ataataagca 1980 caaagttacc tacgtcgttt cagaccattt tgttgagaat gctaagaaga tcattgacaa 2040 agtggatatc ttttatctca ccaagagctt accggacgaa caacgccgtg agatcattga 2100 tattattatt aaaaaagaga agacaattct attgccgtca acctttgata acttaatgat 2160 gctgcgacca aacttaatga actttgaaga tgaaagtgtc atgggaataa ctcaattcag 2220 aattaagcct gaaagcgcga ttctgaaacg tatcttcgac attgttgtcg gacttctgat 2280 gttggtggtt gcttccccgt ttatgcttgt aacggcgatc ttggttaaat tatcatcacc 2340 aggcccgatt atctataagc agacgcgcat caccttaaac caaaaagaat ttaaaatctt 2400 aaagtttcga accatgtcag ctacggcgga agcaaagtca ggaccagtcc ttgccaaggc 2460 tcatgattcg cggattacgc cagtgggtaa atatttgcgc aagttccgac tggatgagtt 2520 gccacagatc tttaacgttt taaaaggtga tatgtccatt gtcgggccac gtccggaacg 2580 tccatatttc gttgatcagt ttaatcagca agagccgcat tactatttac ggcacaacgt 2640 tcgtgctggg atcacaggtt atgcgcaggt ttatggtaag tatgcttccg attatcatag 2700 taagctaaag tttgacttgt tatatatcaa aacttatagt atttttctgg acgcgcgtat 2760 tctgttgcaa accattaaga ttcttttcga caaggtttct tcgcaaggac ttgaagagga 2820 tactgaacca gaacggcaga aacttcatga tctagtcgtt caacaagaca tcacacatct 2880 gtcctaatgc aggaaattgg caacatttgt aatttagcgt caatcaaaca ggtgacggat 2940 attggaatgg gaaaaccacc tctaatatcc gttttttgtt ttttctccgt gcaaattccg 3000 agtagtg 3007 // |
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