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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AF231759; SV 1; linear; genomic DNA; STD; PRO; 1344 BP.
XX
AC   AF231759;
XX
DT   13-JUN-2000 (Rel. 64, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 3)
XX
DE   Salmonella typhimurium SrfJ gene, complete cds.
XX
KW   .
XX
OS   Salmonella enterica subsp. enterica serovar Typhimurium
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
OC   Enterobacteriaceae; Salmonella.
XX
RN   [1]
RP   1-1344
RX   DOI; 10.1046/j.1365-2958.2000.01902.x
RX   PUBMED; 10844662.
RA   Worley M.J., Ching K.H., Heffron F.;
RT   "Salmonella SsrB activates a global regulon of horizontally acquired
RT   genes";
RL   Mol. Microbiol. 36(3):749-761(2000).
XX
RN   [2]
RP   1-1344
RA   Worley M.J., Heffron F., Ching K.H.L.;
RT   ;
RL   Submitted (04-FEB-2000) to the EMBL/GenBank/DDBJ databases.
RL   Microbiology, OHSU, 3181 SW Sam Jackson Park Rd., Portland, OR 97201, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1344
FT                   /organism="Salmonella enterica subsp. enterica serovar
FT                   Typhimurium"
FT                   /strain="14028s"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:90371"
FT   CDS             1..1344
FT                   /codon_start=1
FT                   /transl_table=11
FT                   /product="SrfJ"
FT                   /function="putative virulence factor"
FT                   /note="similar to Homo sapiens lysosomal glucosyl
FT                   ceramidase; activated by transcription factor SsrB"
FT                   /db_xref="GOA:Q9KIJ7"
FT                   /db_xref="HSSP:1OGS"
FT                   /db_xref="InterPro:IPR013781"
FT                   /db_xref="UniProtKB/TrEMBL:Q9KIJ7"
FT                   /protein_id="AAF74576.1"
FT                   /translation="MKGRLISSDPYRQQFLVERAVSFSHRQRDCSELISVLPRHALQQI
FT                   DGFGGSFTEGAGVVFNSMSEKTKAQFLSLYFSAQEHNYTLARMPIQSCDFSLGNYAYVD
FT                   SSADLQQGRLSFSRDEAHLIPLISGALRLNPHMKLMASPWSPPAFMKTNNDMNGGGKLR
FT                   RECYADWADIIINYLLEYRRHGINVQALSVQNEPVAVKTWDSCLYSVEEETAFAVQYLR
FT                   PRLARQGMDEMEIYIWDHDKDGLVDWAELAFADEANYKGINGLAFHWYTGDHFSQIQYL
FT                   AQCLPDKKLLFSEGCVPMESDAGSQIRHWHTYLHDMIGNFKSGCSGFIDWNLLLNSEGG
FT                   PNHQGNLCEAPIQYDAQNDVLRRNHSWYGIGHFCRYVRPGARVMLSSSYDNLLEEVGFV
FT                   NPDGERVLVVYNRDVQERRCRVLDGDKEIALTLPPSGASTLLWRQESI"
XX
SQ   Sequence 1344 BP; 295 A; 328 C; 391 G; 330 T; 0 other;
     atgaaaggca gactcatctc ttccgatccg tatcgtcagc aattccttgt tgagcgtgcg        60
     gtctcttttt cgcatcgtca gcgtgattgc agtgaattaa tcagcgtctt accgcgccac       120
     gcgttacagc agattgacgg attcggcggc agctttaccg aaggtgcggg cgtggtattc       180
     aacagcatga gcgaaaagac gaaggcgcaa tttctttccc tttatttttc tgctcaggaa       240
     cataattaca ctctggcgcg gatgccaatt cagagctgtg atttttccct gggcaattac       300
     gcgtatgtcg attccagcgc tgacctgcag cagggacggc tctccttttc ccgcgatgaa       360
     gcgcatttaa taccgctgat ttccggggcg ttgcggttaa atccacacat gaagctgatg       420
     gcttcgccgt ggagtccgcc ggcgtttatg aaaactaata acgatatgaa cggtggcggc       480
     aagctgcggc gcgaatgcta cgccgactgg gccgatatca ttatcaacta cctgctggaa       540
     taccgccgcc acggcattaa tgtgcaggcg ctctccgtgc agaatgagcc ggtggcggta       600
     aaaacctggg actcctgtct gtatagcgtg gaagaggaga cagcctttgc cgtgcagtat       660
     ctgcgtccgc gcctcgcccg gcagggtatg gatgagatgg agatctatat ctgggatcac       720
     gataaagatg gcctggtgga ctgggctgaa ctcgcctttg ctgacgaagc taattataag       780
     ggaattaacg ggctggcatt ccactggtat accggcgacc atttttcgca aatacagtat       840
     ctggcccagt gcctgccgga taaaaaactc ctgttttccg aaggctgtgt gccaatggag       900
     agcgatgccg gtagccagat tcgccactgg catacctatc tccatgacat gattggtaat       960
     ttcaaatcgg gttgtagcgg gtttatcgac tggaatctgc tgctgaacag tgagggcggg      1020
     ccgaatcatc agggtaatct gtgtgaagcg cccattcaat acgatgcgca aaacgacgtg      1080
     ctgcggcgta accactcctg gtatggtatt ggccacttct gccgctatgt gcgtccgggg      1140
     gcgagggtca tgctttcttc aagttacgat aatcttctgg aagaggtggg atttgtgaat      1200
     cccgacggcg agcgtgtgct ggtggtgtat aaccgcgatg tccaggaaag gcgttgccgg      1260
     gtgctggatg gcgataaaga gatcgcgtta acgctgccgc cgtcaggcgc cagtacgttg      1320
     ctatggcggc aggagtcgat ctga                                             1344
//
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