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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AF225298; SV 1; linear; genomic DNA; STD; VRT; 1216 BP.
XX
AC   AF225298;
XX
DT   21-APR-2000 (Rel. 63, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE   Bambusicola thoracica clone 1 endogenous ASLV retrovirus gag polyprotein
DE   (gag) gene, partial cds.
XX
KW   .
XX
OS   Bambusicola thoracica (Chinese bamboo-partridge)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves;
OC   Neognathae; Galliformes; Phasianidae; Perdicinae; Bambusicola.
XX
RN   [1]
RP   1-1216
RX   DOI; 10.1128/JVI.74.9.3984-3995.2000
RX   PUBMED; 10756010.
RA   Dimcheff D.E., Drovetski S.V., Krishnan M., Mindell D.P.;
RT   "Cospeciation and horizontal transmission of avian sarcoma and leukosis
RT   virus gag genes in galliform birds";
RL   J. Virol. 74(9):3984-3995(2000).
XX
RN   [2]
RP   1-1216
RA   Dimcheff D.E., Drovetski S.V., Krishnan M., Mindell D.P.;
RT   ;
RL   Submitted (14-JAN-2000) to the EMBL/GenBank/DDBJ databases.
RL   Department of Biology and Museum of Zoology, University of Michigan, 1109
RL   Geddes Ave, Ann Arbor, MI 48109-1079, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1216
FT                   /organism="Bambusicola thoracica"
FT                   /mol_type="genomic DNA"
FT                   /specimen_voucher="T1066"
FT                   /clone="1"
FT                   /db_xref="taxon:9083"
FT   repeat_region   <1..>1216
FT                   /rpt_family="endogenous ASLV retrovirus"
FT                   /rpt_type=DISPERSED
FT   CDS             <1..>1216
FT                   /codon_start=2
FT                   /gene="gag"
FT                   /product="gag polyprotein"
FT                   /db_xref="GOA:Q9I9Z9"
FT                   /db_xref="HSSP:1EM9"
FT                   /db_xref="InterPro:IPR008919"
FT                   /db_xref="UniProtKB/TrEMBL:Q9I9Z9"
FT                   /protein_id="AAF64680.1"
FT                   /translation="ACKTYCGKNSPSKKEIGTLLSLLQKEGLLTSPSDLYTPGLWDPIT
FT                   AALAQRVMVLGKSGEFKTWGLVLGALKAAREEQVTSEQAKFWLGLGGGTVSPTGPAGKP
FT                   TAEPQNGEEEKAVIAQQETKMAPGEATAPKATSCYRCETGAGCGCATVAPSAPPPYVGS
FT                   GLYPSLEGLGGPGGESVVTSLAGRDDPPRGVESVATSLAGRDDPPRGVEQRAEPRCSDP
FT                   APGPALTDWARIREELTAAAPSVVAMPVVIKTEGPAWTPLEPKVITRLADTVRTKGLRS
FT                   PVTIAEVEALMSSSLLPHDVTNLMRVILAPAQYALWSDAWDVQLQTVIAAATRDPRHPA
FT                   NGQRRGERTNLDRLKGLADGMAGNPEGQAALLRPGELVAITASALQAFREVARLAEPTV
FT                   PWADIT"
XX
SQ   Sequence 1216 BP; 258 A; 313 C; 412 G; 233 T; 0 other;
     cgcgtgtaag acctattgcg ggaaaaattc tccttctaag aaggaaatag ggacactgct        60
     gtctctttta caaaaggagg gactgcttac atctccctca gacctctata ccccgggact       120
     ctgggatccc attaccgcgg cgcttgccca gcgggtgatg gtactcggga aatcagggga       180
     gtttaaaacc tggggattgg tcttgggggc gctgaaggca gcgcgagagg agcaggttac       240
     atctgaacaa gcgaaatttt ggctgggcct ggggggaggc acggtttctc ccacaggtcc       300
     tgcaggaaag ccgaccgcgg agcctcagaa cggcgaggag gagaaggcag tgattgcgca       360
     gcaagagacg aagatggcgc cgggggaggc gaccgcgcct aaagccacat cttgttatcg       420
     ttgcgaaacg ggcgctggct gcggttgcgc cacagttgcc ccctcggccc cccctcctta       480
     cgtggggagt ggcttgtatc cttctctgga ggggctggga ggtccggggg gggagagtgt       540
     tgtcacgtca ctggcggggc gggatgatcc gccccgaggg gtggagagtg tagccacgtc       600
     actggcgggg cgggacgatc cgccccgagg ggtagagcaa agggcggagc cgagatgttc       660
     tgacccggcc cccgggccag ctttgactga ttgggcgagg attagggaag agcttacagc       720
     ggcggctccg tccgtggtgg ctatgcccgt ggtgataaaa acggagggac cggcttggac       780
     tcctctggag ccaaaagtaa tcacgcgatt ggccgataca gtcaggacca aaggtttgcg       840
     atccccagtt actatagcag aagtggaagc tctaatgtct tcctcactgc tgccgcatga       900
     cgtcacgaat cttatgaggg ttatactagc ccctgcacaa tatgccctgt ggtcggacgc       960
     ttgggacgtc cagttacaga cggttatagc ggcagctacc cgagacccca gacatcctgc      1020
     gaatggtcaa agaagagggg aacgaaccaa tttagatcgt ttaaagggcc tggcggatgg      1080
     gatggccgga aaccctgagg gccaggctgc gcttttgaga ccgggggagc tggtggccat      1140
     cacggcgtcg gctctccaag cgtttaggga ggttgcccgg ttagcggaac ctactgtccc      1200
     ctgggcggac atcaca                                                      1216
//
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