 |
|
EBI DbfetchID AF195055; SV 1; linear; genomic DNA; STD; PRO; 3071 BP. XX AC AF195055; XX DT 06-NOV-2000 (Rel. 65, Created) DT 06-NOV-2000 (Rel. 65, Last updated, Version 1) XX DE Campylobacter jejuni strain MSC57360 hypothetical protein, SiaC (siaC), and DE SiaA (siaA) genes, complete cds. XX KW . XX OS Campylobacter jejuni OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Campylobacteraceae; Campylobacter. XX RN [1] RP 1-3071 RA Guerry P., Ewing C.P., Moran A.P., Trust T.J.; RT "Distinct Functional Alleles of Sialic Acid Biosynthetic Genes in RT Campylobacter Species"; RL Unpublished. XX RN [2] RP 1-3071 RA Guerry P., Ewing C.P., Moran A.P., Trust T.J.; RT ; RL Submitted (14-OCT-1999) to the EMBL/GenBank/DDBJ databases. RL Enteric Diseases Dept., Naval Medical Research Center, 8901 Wisconsin Ave., RL Bethesda, MD 20889, USA XX FH Key Location/Qualifiers FH FT source 1..3071 FT /organism="Campylobacter jejuni" FT /strain="MSC57360" FT /mol_type="genomic DNA" FT /note="serogroup: HS1" FT /db_xref="taxon:197" FT CDS 59..943 FT /codon_start=1 FT /transl_table=11 FT /product="hypothetical protein" FT /note="ORF1" FT /db_xref="GOA:Q7BP25" FT /db_xref="InterPro:IPR009251" FT /db_xref="UniProtKB/TrEMBL:Q7BP25" FT /protein_id="AAG29922.1" FT /translation="MSMNINALVCGNGPSLKNIDYKRLPKQFDVFRCNQFYFEDRYFVG FT KDVKYVFFNPFVFFEQYYTSKKLIQNEEYNIENIVCSTINLEYIDGFQFVDNFELYFSD FT AFLGHEIIKKLKDFFAYIKYNEIYNRQRITSGVYMCATAVALGYKSIYISGIDFYQDTN FT NLYAFDNNKKNLLNKCTGFKNQKFKFINHSMACDLQALDYLMKRYDVNIYSLNSDEYFK FT LAPDIGSDFVLSKKPKKYINDILIPDKYAQERYYGKKSRLKENLHYKLIKDLIRLPSDI FT KHYLKEKYANKNR" FT CDS 924..1955 FT /codon_start=1 FT /transl_table=11 FT /gene="siaC" FT /product="SiaC" FT /note="sialic acid synthetase; required for sialylation of FT LOS core" FT /db_xref="GOA:Q9EU02" FT /db_xref="InterPro:IPR006190" FT /db_xref="InterPro:IPR013132" FT /db_xref="InterPro:IPR013785" FT /db_xref="InterPro:IPR013974" FT /db_xref="InterPro:IPR020007" FT /db_xref="UniProtKB/TrEMBL:Q9EU02" FT /protein_id="AAG29923.1" FT /translation="MQIKIDKLTISQKNPLIIPEIGINHNGSLEIAKLMVDAAKRAGAK FT IIKHQTHIVEDEMSQEAKNVIPGNANISIYEIMEQCALNYKDELALKEYVEKQGLVYLS FT TPFSRAAANRLEDMGVSAYKIGSGECNNYPLIKHIAQFKKPMIISTGMNSIESIKPTVK FT ILRDYEIPFVLLHTTNLYPTPSHLVRLQAMLELYKEFNCLYGLSDHTTNNLACIGAIAL FT GASVLERHFTESMDRKGPDIVCSMDESTLKDLINQTQEMVLLRGDNNKNPLKEEQVTID FT FAFASVVSIKDIKKGEILSMDNIWVKRPSKGGISAKDFEAILGKRAKKDIKNNIQLTWD FT DFE" FT CDS 1952..3067 FT /codon_start=1 FT /transl_table=11 FT /gene="siaA" FT /product="SiaA" FT /note="N-acetylmannosamine synthetase; required for FT sialylation of LOS core" FT /db_xref="GOA:Q7BP23" FT /db_xref="InterPro:IPR003331" FT /db_xref="InterPro:IPR020004" FT /db_xref="UniProtKB/TrEMBL:Q7BP23" FT /protein_id="AAG29924.1" FT /translation="MKKIVFVSGTRADFSKIKSLMMKVENSNEFELFIFVTGMHMSKKF FT GSTYMEIEKCGFKNIYKYINHDKYYQMDKALSSTIDGFSKFIHEIEPDLIVVHGDRVEP FT LAAAIVGSLNNILVAHIEGGELSGTIDESLRHAISKLAHIHLVNDEIAKKRLIQMGEDE FT KSIFIIGSPDLELLNNTISLDEAKKYYDIKFKNYAIAIFHPITTEINSLYKQSEEFVNA FT LIKSEKNYIVIYPNNDLGFELILQNYERLKNNERFKIFPSLRFEYFISLLKNANFIIGN FT SSCIIKEALYLNINGILVGSRQDGRTDINKTIRVNAEEKDILEAILNTSKCTNITNKRL FT EILNSSEQFYRLLKNNILFTINKQKIFMDKK" XX SQ Sequence 3071 BP; 1257 A; 309 C; 496 G; 1009 T; 0 other; tcattttagc tctttatttt tttttgatat aattatacta taaatttaag gtaataaaat 60 gagtatgaat attaatgctt tggtatgcgg taatggacct agtttaaaaa atatagatta 120 taaaaggtta ccaaaacaat ttgatgtatt tagatgcaat cagttttatt ttgaagatag 180 atattttgtg ggtaaagatg taaaatatgt tttttttaat ccttttgtgt tttttgaaca 240 atactatact agtaaaaaac ttatacaaaa cgaagaatat aacatagaaa atatagtttg 300 ttctactatt aatttagaat acatagatgg atttcaattt gttgataatt ttgaattata 360 ctttagtgat gcttttttag gtcatgagat tataaaaaag cttaaagatt tttttgccta 420 tattaaatat aatgaaatat acaataggca aagaattact agtggagttt atatgtgtgc 480 tacagctgtg gctctgggat ataaaagtat atatataagt ggtattgatt tttatcaaga 540 tacaaataat ttatatgcct tcgataataa taaaaaaaat ttattaaata aatgcactgg 600 ttttaaaaat caaaaattca aatttatcaa tcattcaatg gcatgtgatt tacaagcttt 660 agattatcta atgaaaaggt atgatgtgaa tatttatagt ttaaattcag atgagtattt 720 taaattggct ccggatattg gaagtgattt tgtattgagt aaaaaaccaa aaaaatatat 780 aaatgatata ttgataccag ataagtatgc acaagaaaga tattatggaa aaaaaagtag 840 gttaaaagaa aatctccatt ataagctaat aaaagatcta attagacttc caagtgacat 900 aaaacactac ttaaaggaaa aatatgcaaa taaaaataga taaattaact atttctcaga 960 aaaatccttt gataatccct gaaataggta taaatcacaa tggtagttta gaaatagcaa 1020 aacttatggt agatgcggcc aaaagagcag gagctaagat aataaaacac caaactcata 1080 tagtcgaaga tgaaatgagc caagaggcta aaaatgttat accgggtaat gcaaatatta 1140 gcatttatga gattatggaa caatgtgcat taaactataa agatgaacta gctttaaaag 1200 agtatgtaga gaagcaaggt ttggtatatc ttagcactcc atttagtaga gctgcagcaa 1260 atcgtttaga agatatgggt gtaagtgctt ataaaatagg ctcaggtgaa tgtaataatt 1320 atcctttaat aaaacatata gcacaattta aaaaacctat gattataagc accggaatga 1380 atagcataga aagtataaaa cccacagtta agatacttag agattatgaa ataccttttg 1440 ttttgcttca tactacaaat ttatatccta ctccatcgca cttagtaaga ttacaagcta 1500 tgttagaatt atataaagag tttaattgtc tttatggact tagtgatcat accacaaaca 1560 atcttgcatg tataggtgca atagctcttg gagcaagtgt actagaaaga cactttacag 1620 aatccatgga cagaaaaggc cctgatatag tttgctctat ggatgaaagc actttaaaag 1680 atcttataaa tcaaacacaa gaaatggtgc ttttaagagg cgataataat aaaaatcctt 1740 taaaagaaga gcaagtgacc attgattttg catttgctag tgtagtaagt attaaagata 1800 taaaaaaggg tgaaatttta tctatggata atatttgggt aaaaagacct tcaaaaggtg 1860 gtataagtgc aaaggatttt gaagccatac ttggaaaaag agcaaaaaaa gatataaaaa 1920 ataatataca actaacatgg gatgattttg aatgaaaaaa atagtttttg ttagcggaac 1980 tagagctgat ttttctaaaa taaaatctct aatgatgaaa gttgaaaatt caaatgaatt 2040 tgaattattt atatttgtaa ccggtatgca tatgagtaaa aagtttggtt ctacttatat 2100 ggaaatagaa aaatgtggtt ttaaaaatat atataaatat ataaatcacg ataagtatta 2160 tcagatggat aaggctttat catcaacaat agatggtttt tctaaattta tacatgagat 2220 agagcctgat ttaatagtag tgcatggtga tagagtggag cctttagctg ctgctatagt 2280 aggaagttta aataatatct tagtggcaca tatagaaggc ggagagcttt caggaactat 2340 agatgagagt ttaagacatg ctattagtaa attagcacat attcatttag taaatgatga 2400 aatagcaaaa aaaagattaa tacaaatggg tgaagatgag aaatctattt ttattatagg 2460 ttctcctgat ttagaattgc taaataatac tatatcttta gatgaagcaa aaaaatatta 2520 tgatataaaa tttaaaaatt atgccatagc tatatttcat ccaattacaa ccgaaataaa 2580 ctctttatat aaacaaagtg aagaatttgt aaatgctctt ataaaaagtg aaaaaaatta 2640 tatagttatt tatccaaata atgatttagg atttgaatta attttgcaaa attatgaaag 2700 gctaaaaaat aatgaaagat ttaaaatttt tccttcttta agatttgagt attttataag 2760 tttgctaaaa aatgccaatt ttatcatagg aaattcaagt tgtataataa aagaagcttt 2820 atatcttaat ataaatggaa ttttagttgg ttcaagacaa gatggtagaa ctgacattaa 2880 taaaacaata agagtaaatg cagaggaaaa ggatatattg gaagcgattt taaatactag 2940 taaatgcact aatattacaa ataaaagact agaaatttta aatagttctg agcaatttta 3000 taggttattg aaaaataata ttttatttac tataaacaag caaaaaatat tcatggataa 3060 aaaatgactt t 3071 // |
|