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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AF158256; SV 1; linear; mRNA; STD; FUN; 1718 BP.
XX
AC   AF158256;
XX
DT   02-JAN-2000 (Rel. 62, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 3)
XX
DE   Colletotrichum gloeosporioides f. sp. malvae pectin lyase (pnl1) mRNA,
DE   complete cds.
XX
KW   .
XX
OS   Colletotrichum gloeosporioides f. sp. malvae
OC   Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes;
OC   Hypocreomycetidae; Hypocreomycetidae incertae sedis; Glomerellaceae;
OC   Glomerella.
XX
RN   [1]
RP   1-1718
RX   PUBMED; 12101302.
RA   Wei Y., Shih J., Li J., Goodwin P.H.;
RT   "Two pectin lyase genes, pnl-1 and pnl-2, from Colletotrichum
RT   gloeosporioides f. sp. malvae differ in a cellulose-binding domain and in
RT   their expression during infection of Malva pusilla";
RL   Microbiology (Reading, Engl.) 148(Pt 7):2149-2157(2002).
XX
RN   [2]
RP   1-1718
RA   Wei Y.D., Goodwin P.H.;
RT   ;
RL   Submitted (10-JUN-1999) to the EMBL/GenBank/DDBJ databases.
RL   Plant Biotechnology Institute, National Research Council of Canada, 110
RL   Gymnasium Road, Saskatoon, Sask S7N 0W9, Canada
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1718
FT                   /organism="Colletotrichum gloeosporioides f. sp. malvae"
FT                   /mol_type="mRNA"
FT                   /note="forma specialis: malvae"
FT                   /db_xref="taxon:96478"
FT   CDS             148..1587
FT                   /codon_start=1
FT                   /gene="pnl1"
FT                   /product="pectin lyase"
FT                   /note="PNL1"
FT                   /db_xref="GOA:Q9UUS4"
FT                   /db_xref="HSSP:1IDK"
FT                   /db_xref="InterPro:IPR000254"
FT                   /db_xref="InterPro:IPR002022"
FT                   /db_xref="InterPro:IPR011050"
FT                   /db_xref="InterPro:IPR012334"
FT                   /db_xref="UniProtKB/TrEMBL:Q9UUS4"
FT                   /protein_id="AAF22244.1"
FT                   /translation="MKSASAILAVLAGLVNIAAAQAVSGKAEGFAAGVTGGGSATAVTP
FT                   KDIKELTTYLTDDEPRVILLDKEYDYTTSEGTESGNVCASWGTGNACQKIILDTCDSKS
FT                   PASKETWNKAARQPIDVGNNKTILGVGSKGAIKGKGLRMRGSNVIIQNIEVSDLNHKYV
FT                   WGGDAIGFDGADLVWVDHVTTARPGRQHYVFGFNPSKRITLSNNFINGESTYSTGCNGY
FT                   HYWTFEMVGKDDQITMKNNYIYKTTGRGPALSGGTLLHAVNNVWEDINGHALEGGDANA
FT                   RGIFEGNAFIKVSQLVSDYKGRLFSSPDATTNAQCKTALGRACEVNVLEDTTDAFKYTD
FT                   TSFFGDFKGLSIASADAASKIKTSVPANAGAGKLSSGSGSGSGPGSYGSSNTTEPVAAT
FT                   SAAPSAVVSEAAEEEKPAYAPATSAAAAAQPTKPATGSGSGSGSGSVALYGQCGGQGYS
FT                   GATTCASGKCELVNDWYSQCV"
XX
SQ   Sequence 1718 BP; 356 A; 593 C; 438 G; 331 T; 0 other;
     cagtagtctc tctttcccac ttgatttcca ttgcttgtac tccgtctttt ggattccgga        60
     actccaatcg gccgcaacga ttccttgctt gtcattcttt catctctact ttctttaggc       120
     tccatttcca accatttcga acccacaatg aagtcggctt cagccatctt ggcggtcttg       180
     gcaggccttg tcaacatcgc ggccgcccag gccgtctccg gtaaggctga gggtttcgcc       240
     gccggtgtta ccggaggagg cagcgcgacc gcggtcacgc ccaaggacat caaggagctc       300
     accacctacc tgacggacga cgagcctcgc gtcattctct tggacaagga gtacgactac       360
     accacgtccg aaggcaccga gtctggcaat gtctgcgcta gctggggaac aggcaacgcc       420
     tgccagaaga tcatcctgga cacctgcgac agcaagagcc cagcttccaa agagacttgg       480
     aacaaggccg ctcgtcaacc catcgacgtc ggaaacaaca agaccatcct cggcgtcggc       540
     agcaagggcg ccatcaaggg caaggggctg agaatgaggg gcagcaacgt cattatccag       600
     aacattgaag tctccgacct gaaccacaag tacgtttggg gtggtgatgc cattggcttt       660
     gacggtgcgg acctcgtctg ggtcgaccac gtcacgaccg ctcgtcccgg ccgccagcac       720
     tacgtcttcg gcttcaaccc cagcaagcgc atcaccctgt ccaacaactt catcaacggc       780
     gagtccacct actccaccgg ctgcaacggc taccactact ggacctttga gatggtcggc       840
     aaggacgacc agatcaccat gaagaacaac tacatctaca agaccaccgg ccgtggaccc       900
     gcgctgagtg gcggcactct ccttcacgca gtcaacaacg tctgggaaga catcaacggc       960
     cacgccctcg agggaggtga cgcgaacgcc cgcggcatct tcgagggcaa cgccttcatc      1020
     aaggtctcgc agctggtctc cgactacaag ggcaggctct tcagctcccc cgatgccacc      1080
     accaacgccc agtgcaagac cgccctcggc agagcctgcg aggtcaacgt cctcgaggac      1140
     accaccgacg ccttcaagta caccgacacc tccttctttg gcgacttcaa gggcctctcc      1200
     atcgccagcg ccgacgccgc cagcaagatc aagaccagcg tccccgccaa cgccggtgcc      1260
     ggcaagttga gctccggctc cggctccggc tccggtcccg gctcgtacgg ctcgtccaac      1320
     accaccgagc ctgtcgccgc gaccagcgcc gcgccctccg ccgtcgtctc cgaggccgcc      1380
     gaagaagaga agcccgctta cgcccccgcc acttctgctg ctgccgctgc tcagccgacc      1440
     aagcccgcta ccggctccgg ttctggttct ggttctggtt ctgttgcgct ctacggccag      1500
     tgcggtggtc agggatactc tggcgccacc acctgtgcct ctggcaagtg tgagctcgtc      1560
     aacgactggt actcccagtg tgtctaagtc accacccatc aacatcttct gcggccaggc      1620
     agagaaaccg accttcttgt aactgtcttc tatacctata ttcccttgta aataccttaa      1680
     tggcctgggg ctccgtagaa aaccaagcgt cttgcatc                              1718
//
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