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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AF135152; SV 1; linear; genomic DNA; STD; PLN; 1203 BP.
XX
AC   AF135152;
XX
DT   14-MAY-2000 (Rel. 63, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE   Arabis parishii country USA class I chitinase gene, partial cds.
XX
KW   .
XX
OS   Boechera parishii
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Boechera.
XX
RN   [1]
RP   1-1203
RX   DOI; 10.1073/pnas.97.10.5322
RX   PUBMED; 10805791.
RA   Bishop J.G., Dean A.M., Mitchell-Olds T.;
RT   "Rapid evolution in plant chitinases: molecular targets of selection in
RT   plant-pathogen coevolution";
RL   Proc. Natl. Acad. Sci. U.S.A. 97(10):5322-5327(2000).
XX
RN   [2]
RP   1-1203
RA   Bishop J.G., Mitchell-Olds T., Dean A.M.;
RT   ;
RL   Submitted (16-MAR-1999) to the EMBL/GenBank/DDBJ databases.
RL   Genetics, Max Plank Institute for Chemical Ecology, Tatzendpromenade 1a,
RL   Jena 07745, Germany
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1203
FT                   /organism="Boechera parishii"
FT                   /mol_type="genomic DNA"
FT                   /country="USA: San Bernadino Mts, San Bernadino Cty, CA,
FT                   USA"
FT                   /db_xref="taxon:81979"
FT   mRNA            join(<1..396,660..>1203)
FT                   /product="class I chitinase"
FT   CDS             join(<1..396,660..>1203)
FT                   /codon_start=3
FT                   /product="class I chitinase"
FT                   /db_xref="GOA:Q9M7F5"
FT                   /db_xref="HSSP:2BAA"
FT                   /db_xref="InterPro:IPR000726"
FT                   /db_xref="InterPro:IPR001002"
FT                   /db_xref="InterPro:IPR016283"
FT                   /db_xref="InterPro:IPR018371"
FT                   /db_xref="UniProtKB/TrEMBL:Q9M7F5"
FT                   /protein_id="AAF69792.1"
FT                   /translation="SLLLSLASAEQCGRQAGGALCPNGLCCSEFGWCGDTEPYCKQPGC
FT                   QSQCTPGGTPPGPTPTGDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFP
FT                   GFGTTGDTATRKKEIAAFFGQTSHETTGGWASAPDGPFSWGYCFKQEQNPTSNYCEPSA
FT                   TWPCAPGKRYYGRGPMQLSWNYNYGLCGRAIGVDLLNNPDLVANDAVIAFKAAIWFWMT
FT                   AQPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFY
FT                   QRYCNIFGVNPGGNLDCYNQRPFGNGLLGAA"
FT   intron          397..659
FT                   /note="short intron"
XX
SQ   Sequence 1203 BP; 307 A; 288 C; 283 G; 325 T; 0 other;
     tctcacttct tttatcactt gcatcagccg agcaatgtgg tcgtcaagcc ggaggagcac        60
     tctgtcccaa cggtctatgt tgcagcgagt ttggatggtg cggtgacacc gaaccatact       120
     gtaagcagcc tggctgccaa agccagtgca ctcccggcgg tactcctccg ggacccacgc       180
     ccaccggcga tctttcgggc atcatttcaa gttctcagtt cgatgatatg cttaagcata       240
     ggaatgatgc tgcgtgtcct gctagaggtt tctacactta caacgccttt atcaccgctg       300
     caaagtcctt ccccggtttt ggcaccaccg gagacaccgc cacaaggaag aaggagatcg       360
     ccgccttctt cggccagact tcccatgaaa ccacaggtac tcattaacaa ttaagctttg       420
     gttattttaa acgtaattta cagttttgac atttataata atggttaatg aaacaaagtt       480
     tgaataattt caaatatata gtttttccac aatatggtta tttcaaactt ctataccgta       540
     tatccttttt tttttaattt gggtaaaaaa actcattcta aaactgtaat caattattgt       600
     tagatgttaa tgtaaagttg tgactatata ttaatgaacc ggatggttat attatccagg       660
     tgggtgggct tcagcaccgg acggaccatt ttcatggggc tactgtttca agcaagaaca       720
     gaatccaact tcaaactact gtgaaccaag cgccacgtgg ccatgcgcac ctggcaaacg       780
     ctactacgga agaggaccaa tgcagctgtc gtggaactac aattacggtc tatgcggtag       840
     agccatagga gttgacttac tcaacaaccc tgacctcgta gccaacgacg cagtgatcgc       900
     tttcaaagcc gcgatttggt tctggatgac tgctcagcct cccaaaccgt cgtgccacgc       960
     cgtgatcgct gggcagtggc agccgtcaga cgctgaccgt gccgccggga gattaccggg      1020
     ttacggtgtg attacgaaca tcattaacgg tggattggag tgcggacgtg gtcaagacgg      1080
     gagagtcgcc gatcgtatag ggttttacca gaggtattgt aacatatttg gggttaatcc      1140
     tggtggtaat cttgattgtt acaaccaaag gccctttggt aacggcctcc tcggcgctgc      1200
     tat                                                                    1203
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