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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AF135151; SV 1; linear; genomic DNA; STD; PLN; 1143 BP.
XX
AC   AF135151;
XX
DT   14-MAY-2000 (Rel. 63, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE   Arabis microphylla country USA class I chitinase gene, partial cds.
XX
KW   .
XX
OS   Boechera microphylla
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Boechera.
XX
RN   [1]
RP   1-1143
RX   DOI; 10.1073/pnas.97.10.5322
RX   PUBMED; 10805791.
RA   Bishop J.G., Dean A.M., Mitchell-Olds T.;
RT   "Rapid evolution in plant chitinases: molecular targets of selection in
RT   plant-pathogen coevolution";
RL   Proc. Natl. Acad. Sci. U.S.A. 97(10):5322-5327(2000).
XX
RN   [2]
RP   1-1143
RA   Bishop J.G., Mitchell-Olds T., Dean A.M.;
RT   ;
RL   Submitted (16-MAR-1999) to the EMBL/GenBank/DDBJ databases.
RL   Genetics, Max Plank Institute for Chemical Ecology, Tatzendpromenade 1a,
RL   Jena 07745, Germany
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FH   Key             Location/Qualifiers
FH
FT   source          1..1143
FT                   /organism="Boechera microphylla"
FT                   /mol_type="genomic DNA"
FT                   /country="USA: The Dalles, Wasco Cty, OR"
FT                   /db_xref="taxon:81978"
FT   mRNA            join(<1..340,600..>1143)
FT                   /product="class I chitinase"
FT   CDS             join(<1..340,600..>1143)
FT                   /codon_start=1
FT                   /product="class I chitinase"
FT                   /db_xref="GOA:Q9M7F6"
FT                   /db_xref="HSSP:2BAA"
FT                   /db_xref="InterPro:IPR000726"
FT                   /db_xref="InterPro:IPR001002"
FT                   /db_xref="InterPro:IPR016283"
FT                   /db_xref="InterPro:IPR018371"
FT                   /db_xref="UniProtKB/TrEMBL:Q9M7F6"
FT                   /protein_id="AAF69791.1"
FT                   /translation="RQAGGALCPNGLCCSEFGWCGDTEPYCKQPGCQSQCTPGPKPTGD
FT                   LSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEIAAF
FT                   FGQTSHETTGGWASAPDGPFSWGYCFKQEQNPTSNYCEPSATWPCAPGKRYYGRGPXQL
FT                   SWNYNYGLCGRAIGVDLLNNPDLVANDAVIAFKAAIWFWMTAQPPKPSCHAVIVGQWQP
FT                   SDADSAAGRLPGYGVITNIINGGLECGRGQDERVANRIGFYQRYCNIFGVNPGGNLDCY
FT                   NQRSFGNGLLGAA"
FT   intron          341..599
FT                   /note="short intron 2b"
XX
SQ   Sequence 1143 BP; 303 A; 265 C; 268 G; 306 T; 1 other;
     cgtcaagcag gaggagcact ctgtcccaac ggtctatgtt gcagcgagtt tggatggtgc        60
     ggtgacaccg aaccatactg taagcagcct ggctgccaaa gccagtgcac tccgggaccc       120
     aagcccaccg gcgatctttc gggcatcatt tcaagttctc agttcgatga tatgcttaag       180
     cataggaatg atgctgcttg tcctgctaga ggtttctaca cttacaacgc ctttatcacc       240
     gctgcaaagt ccttccccgg ttttggcacc accggagata ccgccacgag gaagaaggag       300
     atcgccgcct tcttcggcca gacttcccat gaaaccacag gtactcatta acaattaagc       360
     tttggttatt tcaaacgtaa tttatagttt tgacatttat aataatagtt ataaaaacaa       420
     agtttgaata ttttcaaata catagttttt ccacaatatg gttatttcaa acttctatac       480
     cgtatatcct tttttttatt tgggtaaaaa aactaattct aaaactgtaa tcaattattg       540
     ttagatgtta atgtaaagtt gtgactatat attaatgaac cggacggtta tatatccagg       600
     tgggtgggct tcagcaccgg acggaccatt ttcatggggc tactgtttca agcaagaaca       660
     gaatccaact tcaaactact gtgaaccaag cgccacgtgg ccatgcgcac ctggcaaacg       720
     ctactacgga agaggaccaa trcagctgtc gtggaactac aattacggtc tatgcggtag       780
     agccatagga gttgacttac tcaacaaccc tgacctcgta gccaacgacg cagtgatcgc       840
     tttcaaagcc gcgatttggt tctggatgac tgctcagcct cccaaaccgt cgtgccacgc       900
     cgtgatcgtc gggcagtggc agccgtcaga cgccgacagt gccgccggga gattaccggg       960
     ttacggtgtg attacgaaca tcattaacgg tggattggag tgcggacgtg gtcaagacga      1020
     gagagtcgcg aatcgtatag ggttttatca gaggtattgt aacatatttg gggttaatcc      1080
     tggtggtaat cttgattgtt acaaccaaag gtcctttggt aacggcctcc tcggcgctgc      1140
     tat                                                                    1143
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