spacer
spacer
EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AF135149; SV 1; linear; genomic DNA; STD; PLN; 1266 BP.
XX
AC   AF135149;
XX
DT   14-MAY-2000 (Rel. 63, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE   Arabis microphylla class I chitinase gene, partial cds.
XX
KW   .
XX
OS   Boechera microphylla
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Boechera.
XX
RN   [1]
RP   1-1266
RX   DOI; 10.1073/pnas.97.10.5322
RX   PUBMED; 10805791.
RA   Bishop J.G., Dean A.M., Mitchell-Olds T.;
RT   "Rapid evolution in plant chitinases: molecular targets of selection in
RT   plant-pathogen coevolution";
RL   Proc. Natl. Acad. Sci. U.S.A. 97(10):5322-5327(2000).
XX
RN   [2]
RP   1-1266
RA   Bishop J.G., Mitchell-Olds T., Dean A.M.;
RT   ;
RL   Submitted (16-MAR-1999) to the EMBL/GenBank/DDBJ databases.
RL   Genetics, Max Plank Institute for Chemical Ecology, Tatzendpromenade 1a,
RL   Jena 07745, Germany
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1266
FT                   /organism="Boechera microphylla"
FT                   /mol_type="genomic DNA"
FT                   /country="USA: The Dalles, Wasco Cty, OR"
FT                   /db_xref="taxon:81978"
FT   mRNA            join(<1..355,723..>1266)
FT                   /product="class I chitinase"
FT   CDS             join(<1..355,723..>1266)
FT                   /codon_start=1
FT                   /product="class I chitinase"
FT                   /db_xref="GOA:Q9M7F8"
FT                   /db_xref="HSSP:2BAA"
FT                   /db_xref="InterPro:IPR000726"
FT                   /db_xref="InterPro:IPR001002"
FT                   /db_xref="InterPro:IPR016283"
FT                   /db_xref="InterPro:IPR018371"
FT                   /db_xref="UniProtKB/TrEMBL:Q9M7F8"
FT                   /protein_id="AAF69789.1"
FT                   /translation="RQAGGALCPNGLCCSEFGWCGDTEPYCKQPGCQSQCTPGGTPPGP
FT                   TPTGDLSDIISSSQFDDMLMHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTTTRKK
FT                   EIAAFFGQTSHETTGGWASAPDGPFSWGYCFKQEQNPTSNYCEPSATWPCAPGKRYYGR
FT                   GPMQLSWNYNYGLCGRAIGVDLLNNPDLVANDAVIAFKAAIWFWMTAQPPKPSXHAVIV
FT                   GQWQPSDADSAAGRLPGYGVITNIINGGLECGRGQDERVANRIGFYQRYCNIFGVNPGG
FT                   NLDCYNQRSFGNGLLGAA"
FT   intron          356..722
FT                   /note="long intron"
XX
SQ   Sequence 1266 BP; 364 A; 281 C; 285 G; 335 T; 1 other;
     cgtcaagccg gaggagcact ctgtcccaac ggtctatgtt gcagcgagtt tggatggtgc        60
     ggtgacaccg aaccatactg taagcagcct ggctgccaaa gccagtgcac tcccggcggt       120
     actcctccgg gacccacgcc caccggcgat ctttcggaca tcatttcaag ttcccagttc       180
     gatgatatgc ttatgcatag gaatgatgct gcttgtcctg ctagaggttt ctacacttac       240
     aacgccttta tcaccgctgc aaagtccttc cccggttttg gcaccaccgg agacaccacc       300
     acgaggaaga aggagatcgc cgccttcttc ggccagactt cccatgaaac tacaggtact       360
     cattaacaat taagctttgc ttatttcaaa cgtaatttat agttttgaca tttataataa       420
     tagttaaaaa aatcaaagtt tgaatatttt caaatataaa gattttccac aatatattct       480
     agtaaaattc aaacaaaatg gccaaaaaca ataaaagttt gttttgatgt ttgcgtttac       540
     agtcgaaaaa attgtttaaa tatttttaaa aattagttta tttggtaaaa aaattaaagt       600
     agtaaaaaag acagcgttac tgatagaaaa gacaaagttt gaatattttc aaatatatat       660
     atttaccaca atatgtaaag ttgtgactat atattaatga accggatggt tatatcatcc       720
     aggtgggtgg gcttcagcac cggacggacc attttcatgg ggctactgtt tcaagcaaga       780
     acagaatcca acttcaaact actgtgaacc aagcgccacg tggccatgcg cacctggcaa       840
     acgctactac ggaagaggac caatgcagct gtcgtggaac tacaattacg gtctatgcgg       900
     tagagccata ggagttgact tactcaacaa ccctgacctc gtagccaacg acgcagtgat       960
     cgctttcaaa gccgcgattt ggttctggat gactgctcag cctcccaaac cgtcgygcca      1020
     cgccgtgatc gtcgggcagt ggcagccgtc agacgccgac agtgccgccg ggagattacc      1080
     gggttacggt gtgattacga acatcattaa cggtggattg gagtgcggac gtggtcaaga      1140
     cgagagagtc gcgaatcgta tagggtttta tcagaggtat tgtaacatat ttggggttaa      1200
     tcctggtggt aatcttgatt gttacaacca aaggtccttt ggtaacggcc tcctcggcgc      1260
     tgctat                                                                 1266
//
spacer
spacer