spacer
spacer
EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AF135148; SV 1; linear; genomic DNA; STD; PLN; 1161 BP.
XX
AC   AF135148;
XX
DT   14-MAY-2000 (Rel. 63, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE   Arabis lyallii class I chitinase gene, partial cds.
XX
KW   .
XX
OS   Boechera lyallii
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Boechera.
XX
RN   [1]
RP   1-1161
RX   DOI; 10.1073/pnas.97.10.5322
RX   PUBMED; 10805791.
RA   Bishop J.G., Dean A.M., Mitchell-Olds T.;
RT   "Rapid evolution in plant chitinases: molecular targets of selection in
RT   plant-pathogen coevolution";
RL   Proc. Natl. Acad. Sci. U.S.A. 97(10):5322-5327(2000).
XX
RN   [2]
RP   1-1161
RA   Bishop J.G., Mitchell-Olds T., Dean A.M.;
RT   ;
RL   Submitted (16-MAR-1999) to the EMBL/GenBank/DDBJ databases.
RL   Genetics, Max Plank Institute for Chemical Ecology, Tatzendpromenade 1a,
RL   Jena 07745, Germany
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1161
FT                   /organism="Boechera lyallii"
FT                   /mol_type="genomic DNA"
FT                   /country="USA: Walton Lake, MT"
FT                   /note="collected by Mitchell-Olds"
FT                   /db_xref="taxon:81977"
FT   mRNA            join(<1..357,618..>1161)
FT                   /product="class I chitinase"
FT   CDS             join(<1..357,618..>1161)
FT                   /codon_start=3
FT                   /product="class I chitinase"
FT                   /db_xref="GOA:Q9M7F9"
FT                   /db_xref="HSSP:1CNS"
FT                   /db_xref="InterPro:IPR000726"
FT                   /db_xref="InterPro:IPR001002"
FT                   /db_xref="InterPro:IPR016283"
FT                   /db_xref="InterPro:IPR018371"
FT                   /db_xref="UniProtKB/TrEMBL:Q9M7F9"
FT                   /protein_id="AAF69788.1"
FT                   /translation="RQAGGALCPNGLCCSEFGWCGDTEPYCKQPGCQSQCTPGGTPPGP
FT                   TPTGDLSGIISSSQFDDMLKHRNDAACPARDFYTYNAFITAAKSFPGFGTTGDTATRKK
FT                   EIAAFFGQTSHETTGGWASAPDGPFSWGYCFKQEQNPTSNYCEPSATWPCAPGKRYYGR
FT                   GPMQLSWNYNYGLCGRAIGVDLLNDPDLVANDAVIAFKAAIWFWMTAQPPKPSCHAVIV
FT                   GQWQPSDADLAAGRLSGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGVNPGG
FT                   NLDCYNQRPFGNGLLGAA"
FT   intron          358..617
FT                   /note="short intron"
XX
SQ   Sequence 1161 BP; 299 A; 275 C; 273 G; 314 T; 0 other;
     gtcgtcaagc cggaggagca ctctgtccca acggtctatg ttgcagcgag tttggatggt        60
     gcggtgacac cgaaccatac tgtaagcagc ctggctgcca aagccagtgc actcccggcg       120
     gtactcctcc gggacccacg cccaccggcg atctttcggg catcatttca agttctcagt       180
     tcgatgatat gcttaagcat aggaatgatg ctgcttgtcc tgctagagat ttctacactt       240
     acaacgcctt tatcaccgct gcaaagtcct tccccggttt tggcaccacc ggagacaccg       300
     ccacgaggaa gaaggagatc gccgccttct tcggccagac ttcccatgaa accacaggta       360
     ctcattaaca attaagcttt ggttacttca aacgtaattt atagtttttc atttataata       420
     atagttaaaa aaacaaagtt tgaatatttt caaatatata gattttccac aatatggtta       480
     tttcaaactt ctataccgta tatctttttt ttttatttgg gtaaaaaaac tcattctaaa       540
     actgtaatca attattgtta gatgttaatg taaagttgtg actatatatt aatgaaccgg       600
     atggttatat catccaggtg ggtgggcttc agcaccggac ggaccatttt catggggcta       660
     ctgtttcaag caagaacaga atccaacttc aaactactgt gaaccaagcg ccacgtggcc       720
     atgcgcacct ggcaaacgct actacggaag aggaccaatg cagctgtcgt ggaactacaa       780
     ttacggtcta tgcggtagag ccataggagt tgacttactc aacgaccctg acctcgtagc       840
     caacgacgca gttatcgctt tcaaagccgc gatttggttc tggatgactg ctcagcctcc       900
     caaaccgtcg tgccacgccg tgatcgtcgg gcagtggcag ccgtcagacg ctgaccttgc       960
     cgccgggaga ttatcgggtt acggtgtgat tacgaacatc attaacggtg gattggagtg      1020
     cggacgtggt caagacggga gagtcgcgga tcgtataggg ttttatcaga ggtattgtaa      1080
     catatttggg gttaatcctg gtggtaatct tgattgttac aaccaaaggc cctttggtaa      1140
     cggcctcctc ggcgctgcta t                                                1161
//
spacer
spacer