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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AF135147; SV 1; linear; genomic DNA; STD; PLN; 1151 BP.
XX
AC   AF135147;
XX
DT   14-MAY-2000 (Rel. 63, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE   Arabis lignifera country USA class I chitinase gene, partial cds.
XX
KW   .
XX
OS   Boechera lignifera
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Boechera.
XX
RN   [1]
RP   1-1151
RX   DOI; 10.1073/pnas.97.10.5322
RX   PUBMED; 10805791.
RA   Bishop J.G., Dean A.M., Mitchell-Olds T.;
RT   "Rapid evolution in plant chitinases: molecular targets of selection in
RT   plant-pathogen coevolution";
RL   Proc. Natl. Acad. Sci. U.S.A. 97(10):5322-5327(2000).
XX
RN   [2]
RP   1-1151
RA   Bishop J.G., Mitchell-Olds T., Dean A.M.;
RT   ;
RL   Submitted (16-MAR-1999) to the EMBL/GenBank/DDBJ databases.
RL   Genetics, Max Plank Institute for Chemical Ecology, Tatzendpromenade 1a,
RL   Jena 07745, Germany
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1151
FT                   /organism="Boechera lignifera"
FT                   /mol_type="genomic DNA"
FT                   /country="USA: Rich Cty, UT"
FT                   /note="collected by M. Marler"
FT                   /db_xref="taxon:81976"
FT   mRNA            join(<1..345,608..>1151)
FT                   /product="class I chitinase"
FT   CDS             join(<1..345,608..>1151)
FT                   /codon_start=3
FT                   /product="class I chitinase"
FT                   /db_xref="GOA:Q9M7G0"
FT                   /db_xref="HSSP:2BAA"
FT                   /db_xref="InterPro:IPR000726"
FT                   /db_xref="InterPro:IPR001002"
FT                   /db_xref="InterPro:IPR016283"
FT                   /db_xref="InterPro:IPR018371"
FT                   /db_xref="UniProtKB/TrEMBL:Q9M7G0"
FT                   /protein_id="AAF69787.1"
FT                   /translation="RQAGGALCPNGLCCSEFGWCGDTEPYCKQPGCQSQCTPPGPTPTG
FT                   DLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEIAA
FT                   FFGQTSHETTGGWASAPDGPFSWGYCFKQEQNPTSNYCEPSATWPCAPGKRYYGRGPMQ
FT                   LSWNYNYGLCGRAIGVDLLNNPDLVANDAVIAFKAAIWFWMTAQPPKPSCHAVIVGQWQ
FT                   PSGADSAAGRLPGYGVITNIINGGLECGRGQDGRVADRIEFYQRYCNIFGVNPGGNLDC
FT                   YNQRPFGNGLLGAA"
FT   intron          346..607
FT                   /note="short intron"
XX
SQ   Sequence 1151 BP; 300 A; 272 C; 272 G; 307 T; 0 other;
     gtcgtcaagc cggaggagca ctctgtccca acggtctatg ttgcagcgag tttggatggt        60
     gcggtgacac cgaaccatac tgtaagcagc ctggctgcca aagccagtgc actcctccgg       120
     gacccacgcc caccggcgat ctttcgggca tcatttcaag ttctcagttc gatgatatgc       180
     ttaagcatag gaatgatgct gcttgtcctg ctagaggttt ctacacttac aacgccttta       240
     tcaccgctgc aaagtccttc cccggttttg gcaccaccgg agacaccgcc acgaggaaga       300
     aggagatcgc cgccttcttc ggccagactt cccatgaaac cacaggtcct cattaacaat       360
     taagctttgg ttatttcaaa cgtaatttat agttttgaca tttataataa tagttaaaaa       420
     aaacaaagtt tgaatatttt caaatatata gattttccac aatatggtta tttcaaactt       480
     ctataccgta tatccttttt ttttatttgg gtaaaaaaac tcattctaaa actgtaatca       540
     attattgtta gatgttaatg tgaagttgtg actatatatt aatgaaccgg atggttatat       600
     catccaggtg ggtgggcttc agcaccagac ggaccatttt catggggcta ctgtttcaag       660
     caagaacaga atccaacttc aaactactgt gaaccaagcg ccacgtggcc atgcgcacct       720
     ggcaaacgct actacggaag aggaccaatg cagctgtcgt ggaactacaa ttacggtcta       780
     tgcggtagag ccataggagt tgacttactc aacaaccctg accttgtagc caacgacgca       840
     gtgatcgctt tcaaagccgc gatttggttc tggatgactg ctcagcctcc caaaccgtcg       900
     tgccacgccg tgatcgtcgg gcagtggcag ccgtcaggcg ccgacagtgc cgccgggaga       960
     ttaccgggtt acggtgtgat tacgaacatc atcaacggtg gattggagtg cggacgtggt      1020
     caagacggga gagtcgcgga tcgtatagag ttttatcaga ggtattgtaa catatttggg      1080
     gttaatcctg gtggtaatct tgattgttac aaccaaaggc cctttggtaa cggcctcctc      1140
     ggcgctgcta t                                                           1151
//
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