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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AF135146; SV 1; linear; genomic DNA; STD; PLN; 1358 BP.
XX
AC   AF135146;
XX
DT   14-MAY-2000 (Rel. 63, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE   Arabis lignifera country USA class I chitinase gene, partial cds.
XX
KW   .
XX
OS   Boechera lignifera
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Boechera.
XX
RN   [1]
RP   1-1358
RX   DOI; 10.1073/pnas.97.10.5322
RX   PUBMED; 10805791.
RA   Bishop J.G., Dean A.M., Mitchell-Olds T.;
RT   "Rapid evolution in plant chitinases: molecular targets of selection in
RT   plant-pathogen coevolution";
RL   Proc. Natl. Acad. Sci. U.S.A. 97(10):5322-5327(2000).
XX
RN   [2]
RP   1-1358
RA   Bishop J.G., Mitchell-Olds T., Dean A.M.;
RT   ;
RL   Submitted (16-MAR-1999) to the EMBL/GenBank/DDBJ databases.
RL   Genetics, Max Plank Institute for Chemical Ecology, Tatzendpromenade 1a,
RL   Jena 07745, Germany
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1358
FT                   /organism="Boechera lignifera"
FT                   /mol_type="genomic DNA"
FT                   /country="USA: Rich Cty, UT"
FT                   /note="collected by M. Marler"
FT                   /db_xref="taxon:81976"
FT   mRNA            join(<1..358,815..>1358)
FT                   /product="class I chitinase"
FT   CDS             join(<1..358,815..>1358)
FT                   /codon_start=1
FT                   /product="class I chitinase"
FT                   /db_xref="GOA:Q9M7G1"
FT                   /db_xref="HSSP:1CNS"
FT                   /db_xref="InterPro:IPR016283"
FT                   /db_xref="UniProtKB/TrEMBL:Q9M7G1"
FT                   /protein_id="AAF69786.1"
FT                   /translation="CRQAGGALCPNGLCCSEFGWCGDTEPYCKQPGCQSQCTPGGTPPG
FT                   PTPTGDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRK
FT                   KEIAAFFGQTSHETTGGWASAPDGPFSWGYCFKQEQNPTSNYCEPSATWPCAPGKRYYG
FT                   RGPIQLSWNYNYGLCGRAIGVDLLNNPDLVANDAVIAFKAAIWFWMTAQPPKPSCHAVI
FT                   VGQWQPSDADSAAGRLPGYGVITNIINGGLECGRGQDERVANRIGFYQRYCNIFGVNPG
FT                   DNLDCYNQRSFGNGLLGAA"
FT   intron          359..814
FT                   /note="long intron 1b"
XX
SQ   Sequence 1358 BP; 384 A; 292 C; 299 G; 383 T; 0 other;
     tgtcgtcaag ccggaggagc actctgtccc aacggtctat gttgcagcga gtttggatgg        60
     tgcggtgaca ccgaaccata ctgtaagcag cctggctgcc aaagccagtg cactcccggc       120
     ggtactcctc cgggacccac gcccaccggc gatctttcgg gcatcatttc aagttctcag       180
     ttcgatgata tgcttaagca taggaatgat gctgcttgtc ctgctagagg tttctacact       240
     tacaacgcct ttatcaccgc tgcaaagtcc ttccccggtt ttggcaccac cggagacacc       300
     gccacaagga agaaggagat cgccgccttc ttcggccaga cttcccatga aaccacaggt       360
     actcattaac aattaagctt tggttatttc aaacgtaatt tagaccatca ttaatcctag       420
     tttttcaaag atttttagaa ggtttcttaa gtataatttt aattaaaata acgaaaagtg       480
     atattcgagt ttagaaacat tttttattta agagttgtaa aaaatggttc ttaacaattt       540
     attattaaga aaaatagata agaaacttat tatggatttt accattaaag atgcttttat       600
     agttttgaca tctataataa tagttaatga aacaaagttt gaataatttc aaatatatag       660
     attttccaca atatgggtat ttcaaacttc tatacggtat atcctttttt tttatttggg       720
     taaaaaaact catctaaaac tgtaatcaat tattgctaga tgttaatgta aagttgtgac       780
     tatatattaa tgaaccggac ggttataaat ccaggtgggt gggcttcagc accggacgga       840
     ccattttcat ggggctactg tttcaagcaa gaacagaatc caacttcaaa ctactgtgaa       900
     ccaagcgcca cgtggccatg cgcacctggc aaacgctact acggaagagg accaatacag       960
     ctgtcgtgga actacaatta cggtctatgc ggtagagcca taggagttga cttactcaac      1020
     aaccctgacc tcgtagccaa cgacgcagtg atcgctttca aagccgcgat ttggttctgg      1080
     atgactgctc agcctcccaa accgtcgtgc cacgccgtga tcgtcgggca gtggcagccg      1140
     tcagacgccg acagtgccgc cgggagatta ccgggttacg gtgtgattac gaacatcatt      1200
     aacggtggat tggagtgcgg acgtggtcaa gacgagagag tcgcgaatcg tatagggttt      1260
     tatcagaggt attgtaacat atttggggtt aatcctggtg ataatcttga ttgttacaac      1320
     caaaggtcct ttggtaacgg cctcctcggc gctgctat                              1358
//
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