spacer
spacer
EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AF135145; SV 1; linear; genomic DNA; STD; PLN; 1460 BP.
XX
AC   AF135145;
XX
DT   14-MAY-2000 (Rel. 63, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE   Arabis lignifera country USA class I chitinase gene, partial cds.
XX
KW   .
XX
OS   Boechera lignifera
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Boechera.
XX
RN   [1]
RP   1-1460
RX   DOI; 10.1073/pnas.97.10.5322
RX   PUBMED; 10805791.
RA   Bishop J.G., Dean A.M., Mitchell-Olds T.;
RT   "Rapid evolution in plant chitinases: molecular targets of selection in
RT   plant-pathogen coevolution";
RL   Proc. Natl. Acad. Sci. U.S.A. 97(10):5322-5327(2000).
XX
RN   [2]
RP   1-1460
RA   Bishop J.G., Mitchell-Olds T., Dean A.M.;
RT   ;
RL   Submitted (16-MAR-1999) to the EMBL/GenBank/DDBJ databases.
RL   Genetics, Max Plank Institute for Chemical Ecology, Tatzendpromenade 1a,
RL   Jena 07745, Germany
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1460
FT                   /organism="Boechera lignifera"
FT                   /mol_type="genomic DNA"
FT                   /country="USA: Rich Cty, UT"
FT                   /note="collected by M. Marler"
FT                   /db_xref="taxon:81976"
FT   mRNA            join(<1..378,917..>1460)
FT                   /product="class I chitinase"
FT   CDS             join(<1..378,917..>1460)
FT                   /codon_start=3
FT                   /product="class I chitinase"
FT                   /db_xref="GOA:Q9M7G2"
FT                   /db_xref="HSSP:2BAA"
FT                   /db_xref="InterPro:IPR000726"
FT                   /db_xref="InterPro:IPR001002"
FT                   /db_xref="InterPro:IPR016283"
FT                   /db_xref="InterPro:IPR018371"
FT                   /db_xref="UniProtKB/TrEMBL:Q9M7G2"
FT                   /protein_id="AAF69785.1"
FT                   /translation="ASAEQCGRQAGGALCPNGLCCSEFGWCGDTEPYCKQPGCQSQCTP
FT                   GGTPPGPTPTGDLSDIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPDFGTTG
FT                   DTTTRKKEIAAFFGQTSHETTGGWASAPDGPFSWGYCFKQEVNPNSDYCEPSATWPCAF
FT                   GKRYYGRGPIQLSWNYNYGLCGRAIGVDLLNNPDLVANDAVIAFKAAIWFWMTAQPPKP
FT                   SCHAVIVGQWQPSDADSAAGRLPGYGVITNIINGGLECGRGQDGRVANRIGFYQRYCNI
FT                   FGVNPGDNLDCYNQRSFGNGLLGAA"
FT   intron          379..916
FT                   /note="long intron"
XX
SQ   Sequence 1460 BP; 434 A; 317 C; 313 G; 396 T; 0 other;
     ttgcatcagc cgagcaatgt ggtcgtcaag ccggaggagc actctgtccc aacggtctat        60
     gttgcagcga gtttggatgg tgcggtgaca ccgaaccata ctgtaagcag cctggctgcc       120
     aaagccagtg cactcccggc ggtactcctc cgggacccac gcccaccggc gatctttcgg       180
     acatcatttc aagttcccag ttcgatgata tgcttaagca taggaatgat gctgcttgtc       240
     ctgctagagg tttctacact tacaacgcct ttatcaccgc tgcaaagtcc ttccccgatt       300
     ttggcaccac cggagacacc accacgagga agaaggagat cgccgccttc ttcggccaga       360
     cttcccatga aaccacaggt acttattaac aattaagctt tggttatttc aaacgtaatt       420
     tatagttttg acatttataa taatagttaa caaaccaaag tttgaatatt ttcaaatata       480
     tagattttcc acaatatatt ctagtaaaat tcaaacaaaa tggccaaaaa caataaaagt       540
     ttgttttgat gtttgcgttt acagtcgaaa aaattgttta aataatttta aaaattagtt       600
     tatttggtaa aaaaattaaa gtagtaaaaa aagacaacgg tactaaaaat gaaaatttca       660
     cgctaagttt tactattttt actattggta gctcagtagc tgttacaaaa aaaaaaaggg       720
     tatattccct accgcaaagc agaaataacc aatcaaacct atatcaaacg taagcgcaac       780
     aacacaactt ctataccata tatctttttt tttttgttta gtagaaaaac tcattctaaa       840
     actgtaacca attattgtta gatgttaatg taaagttgtg actatatatt aatgaaccgg       900
     acggttatat atccaggtgg gtgggcttca gcaccggacg gaccattttc atggggctac       960
     tgtttcaagc aagaagtgaa tccaaattca gactactgtg aaccaagcgc cacgtggcca      1020
     tgcgcatttg gcaaacgcta ctacggaaga ggaccaatac agctgtcgtg gaactacaat      1080
     tacggtctat gcggtagagc cataggagtt gacttactca acaaccctga cctcgtagcc      1140
     aacgacgcag tgatcgcttt caaagccgcg atttggttct ggatgactgc tcagcctccc      1200
     aaaccgtcgt gccacgccgt gatcgtcggg cagtggcagc cgtcagacgc cgacagtgcc      1260
     gccgggagat taccgggtta cggtgtgatt acgaacatca ttaacggtgg attggagtgc      1320
     ggacgtggtc aagacgggag agtcgcgaat cgtatagggt tttatcagag gtattgtaac      1380
     atatttgggg ttaatcctgg tgataatctt gattgttaca accaaaggtc ctttggtaac      1440
     ggcctcctcg gcgctgctat                                                  1460
//
spacer
spacer