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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AF135144; SV 1; linear; genomic DNA; STD; PLN; 1191 BP.
XX
AC   AF135144;
XX
DT   14-MAY-2000 (Rel. 63, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE   Arabis lemmonii country USA class I chitinase gene, partial cds.
XX
KW   .
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OS   Boechera lemmonii
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Boechera.
XX
RN   [1]
RP   1-1191
RX   DOI; 10.1073/pnas.97.10.5322
RX   PUBMED; 10805791.
RA   Bishop J.G., Dean A.M., Mitchell-Olds T.;
RT   "Rapid evolution in plant chitinases: molecular targets of selection in
RT   plant-pathogen coevolution";
RL   Proc. Natl. Acad. Sci. U.S.A. 97(10):5322-5327(2000).
XX
RN   [2]
RP   1-1191
RA   Bishop J.G., Mitchell-Olds T., Dean A.M.;
RT   ;
RL   Submitted (16-MAR-1999) to the EMBL/GenBank/DDBJ databases.
RL   Genetics, Max Plank Institute for Chemical Ecology, Tatzendpromenade 1a,
RL   Jena 07745, Germany
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FH   Key             Location/Qualifiers
FH
FT   source          1..1191
FT                   /organism="Boechera lemmonii"
FT                   /mol_type="genomic DNA"
FT                   /country="USA: Beaverhead Cty, MT"
FT                   /note="collected by M. Marler"
FT                   /db_xref="taxon:93889"
FT   mRNA            join(<1..360,644..1191)
FT                   /product="class I chitinase"
FT   CDS             join(<1..360,644..1191)
FT                   /codon_start=3
FT                   /product="class I chitinase"
FT                   /db_xref="GOA:Q9M7G3"
FT                   /db_xref="HSSP:2BAA"
FT                   /db_xref="InterPro:IPR000726"
FT                   /db_xref="InterPro:IPR001002"
FT                   /db_xref="InterPro:IPR016283"
FT                   /db_xref="InterPro:IPR018371"
FT                   /db_xref="UniProtKB/TrEMBL:Q9M7G3"
FT                   /protein_id="AAF69784.1"
FT                   /translation="RRQAGGALCPNGLCCSEFGWCGDTEPYCKQPGCQSQCTPGGTPPR
FT                   PTPTGDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRK
FT                   KEIAAFFGQTSHETTGGWASAPDGPFSWGYCFKQEQNPTSNYCEPSATWPCAPGKRYYG
FT                   RGPMQLSWNYNYGLCGRAIGVDLLNNPDLVANDAVIAFKAAIWFWMTAQPPKPSCHAVI
FT                   AGQWQPSDXDSAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFYQXYCNIFGVNPG
FT                   GNLDCYNQRPFGNGLLDAAI"
FT   intron          361..643
FT                   /note="short intron"
XX
SQ   Sequence 1191 BP; 313 A; 280 C; 275 G; 320 T; 3 other;
     cccgtcgtca agccggagga gcactctgtc ccaacggtct atgttgcagc gagtttggat        60
     ggtgcggtga caccgaacca tactgtaagc agcctggctg ccaaagccag tgcactcccg       120
     gcggtactcc tccgagaccc acgcccaccg gcgatctttc gggcatcatt tcaagttctc       180
     agttcgatga tatgcttaag cataggaatg atgctgcttg tcctgctaga ggtttctaca       240
     cttacaacgc ctttatcacc gctgcaaagt ccttccccgg ttttggcacc accggagaca       300
     ccgccacgag gaagaaggag atcgccgcct tcttcggcca gacttcccat gaaaccacag       360
     gtactcatta acaattaagc tttggttatt tcaaacgtaa tttatagttt tgacatttat       420
     aataataata gttaaaaaaa caaagtttga atattttcaa atatatagat tttccacaat       480
     atggttattt caaacttcta taccgtatat cctttttttt atttgggtaa aaaaactcat       540
     tctaaaactg tactatatat tgattacatg taatcaatta ttgttagatg ttaatgtaaa       600
     gttgtgacta tatattaatg aaccggatgg ttatatcatc caggtgggtg ggcttcagca       660
     ccggacggac cattttcatg gggctactgt ttcaagcaag aacagaatcc aacttcaaac       720
     tactgtgaac caagcgccac gtggccatgc gcacctggca aacgctacta cggaagagga       780
     ccaatgcagc tgtcgtggaa ctacaattac ggtctatgcg gtagagccat aggagttgac       840
     ttactcaaca accctgacct cgtagccaac gacgcagtka tcgctttcaa agccgcgatt       900
     tggttctgga tgactgctca gcctcccaaa ccgtcgtgcc acgccgtgat cgctgggcag       960
     tggcagccgt cagacgycga cagtgccgcc gggagattac cgggttacgg tgtgattacg      1020
     aacatcatta acggtggatt ggagtgcgga cgtggtcaag acgggagagt cgcggatcgt      1080
     atagggtttt atcagrggta ttgtaacata tttggggtta atcctggtgg taatcttgat      1140
     tgttacaacc aaaggccctt tggtaacggc ctcctcgacg ctgctattta a               1191
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