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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AF135143; SV 1; linear; genomic DNA; STD; PLN; 1446 BP.
XX
AC   AF135143;
XX
DT   14-MAY-2000 (Rel. 63, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE   Arabis lemmonii country USA class I chitinase gene, partial cds.
XX
KW   .
XX
OS   Boechera lemmonii
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Boechera.
XX
RN   [1]
RP   1-1446
RX   DOI; 10.1073/pnas.97.10.5322
RX   PUBMED; 10805791.
RA   Bishop J.G., Dean A.M., Mitchell-Olds T.;
RT   "Rapid evolution in plant chitinases: molecular targets of selection in
RT   plant-pathogen coevolution";
RL   Proc. Natl. Acad. Sci. U.S.A. 97(10):5322-5327(2000).
XX
RN   [2]
RP   1-1446
RA   Bishop J.G., Mitchell-Olds T., Dean A.M.;
RT   ;
RL   Submitted (16-MAR-1999) to the EMBL/GenBank/DDBJ databases.
RL   Genetics, Max Plank Institute for Chemical Ecology, Tatzendpromenade 1a,
RL   Jena 07745, Germany
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1446
FT                   /organism="Boechera lemmonii"
FT                   /mol_type="genomic DNA"
FT                   /country="USA: Beaverhead Cty, MT"
FT                   /note="collected by M. Marler"
FT                   /db_xref="taxon:93889"
FT   mRNA            join(<1..362,899..1446)
FT                   /product="class I chitinase"
FT   CDS             join(<1..362,899..1446)
FT                   /codon_start=2
FT                   /product="class I chitinase"
FT                   /db_xref="GOA:Q9M7G4"
FT                   /db_xref="HSSP:2BAA"
FT                   /db_xref="InterPro:IPR000726"
FT                   /db_xref="InterPro:IPR001002"
FT                   /db_xref="InterPro:IPR016283"
FT                   /db_xref="InterPro:IPR018371"
FT                   /db_xref="UniProtKB/TrEMBL:Q9M7G4"
FT                   /protein_id="AAF69783.1"
FT                   /translation="CGRQAGGALCPNGLCCSEFGWCGDTEPYCKQPGCQSQCTPGGTPP
FT                   GPTPTGDLSDIISSSQFDDMLMHRNDAACPARGFYTYNAFITAAKSFPNFGTTGDTTTR
FT                   KKEIAAFFGQTSHETTGGWASAPDGPFSWGYCFKQEVNPNSDYCEPSATWPCAPGKRYY
FT                   GRGPMQLSWNYNYGLCGRAIGVDLLNNPDLVANDAVIAFKAAIWFWMTAQPPKPSCHAV
FT                   IAGQWQPSDADSAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGVNP
FT                   GGNLDCYNQRPFGNGLLGAAI"
FT   intron          363..898
FT                   /note="long intron"
XX
SQ   Sequence 1446 BP; 427 A; 313 C; 309 G; 397 T; 0 other;
     atgtggtcgt caagccggag gagcactctg tcccaacggt ctatgttgca gcgagtttgg        60
     atggtgcggt gacaccgaac catactgtaa gcagcctggc tgccaaagcc agtgcactcc       120
     cggcggtact cctccgggac ccacgcccac cggcgatctt tcggacatca tttcaagttc       180
     ccagttcgat gatatgctta tgcataggaa tgatgctgct tgtcctgcta gaggtttcta       240
     cacttacaac gcctttatca ccgctgcaaa gtccttcccc aattttggca ccaccggaga       300
     caccaccacg aggaagaagg agatcgccgc cttcttcggc cagacttccc atgaaactac       360
     aggtactcat taacaattaa gctttggtta tttcaaacgt aattaatagt tttgacattt       420
     ataataatag ttaaaaaacc aaagtttgaa tattttcaaa tatatagatt ttccacatta       480
     tattctagca aaattcaaac aaaatggcca aaaacaataa aagtttgttt tgatgtttgc       540
     gtttacagtc gaaaaaattg tttaaatatt tttaaaaatt agtttatttg gtaaaaaaat       600
     taaagtagta aaaaaagaca acggtactaa aaatgaaaat ttcacgctaa gttttactat       660
     ttttactatt ggtagctcag tagctgttac aaaaaaagcg tatattccct accgcaaagc       720
     agaaataacc aatcaaacct atatcaaacg taaacgcaaa caacacaact tctatactat       780
     atatcctttt tttttttgtt gagtagaaaa actcattcta aaactgtaat caattattgt       840
     tagatgttaa tgtaaagttg tgactatata ttaatgaacc ggacggttat atatttaggt       900
     gggtgggctt cagcaccgga cggaccattt tcatggggct actgtttcaa gcaagaagtg       960
     aatccaaatt cagactactg tgaaccaagc gccacgtggc catgcgcacc tggcaaacgc      1020
     tactacggaa gaggaccaat gcagctgtcg tggaactaca attacggtct atgcggtaga      1080
     gccataggag ttgacttact caacaaccct gacctcgtag ccaacgacgc agttatcgct      1140
     ttcaaagccg cgatttggtt ctggatgact gctcagcctc ccaaaccgtc gtgccacgcc      1200
     gtgatcgctg ggcagtggca gccgtcagac gccgacagtg ccgccgggag attaccgggt      1260
     tacggtgtga ttacgaacat cattaacggt ggattggagt gcggacgtgg tcaagacggg      1320
     agagtcgcgg atcgtatagg gttttatcag aggtattgta acatatttgg ggttaatcct      1380
     ggtggtaatc ttgattgtta caaccaaagg ccctttggta acggcctcct cggcgctgct      1440
     atttaa                                                                 1446
//
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