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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AF135140; SV 1; linear; genomic DNA; STD; PLN; 1295 BP.
XX
AC   AF135140;
XX
DT   14-MAY-2000 (Rel. 63, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE   Arabis glabra country USA class I chitinase gene, partial cds.
XX
KW   .
XX
OS   Turritis glabra (tower rockcress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Turritis.
XX
RN   [1]
RP   1-1295
RX   DOI; 10.1073/pnas.97.10.5322
RX   PUBMED; 10805791.
RA   Bishop J.G., Dean A.M., Mitchell-Olds T.;
RT   "Rapid evolution in plant chitinases: molecular targets of selection in
RT   plant-pathogen coevolution";
RL   Proc. Natl. Acad. Sci. U.S.A. 97(10):5322-5327(2000).
XX
RN   [2]
RP   1-1295
RA   Bishop J.G., Mitchell-Olds T., Dean A.M.;
RT   ;
RL   Submitted (16-MAR-1999) to the EMBL/GenBank/DDBJ databases.
RL   Genetics, Max Plank Institute for Chemical Ecology, Tatzendpromenade 1a,
RL   Jena 07745, Germany
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FH   Key             Location/Qualifiers
FH
FT   source          1..1295
FT                   /organism="Turritis glabra"
FT                   /mol_type="genomic DNA"
FT                   /country="USA: Bodega Marine Lab, Sonoma County,
FT                   California"
FT                   /db_xref="taxon:63678"
FT   mRNA            join(<1..415,748..1295)
FT                   /product="class I chitinase"
FT   CDS             join(<1..415,748..1295)
FT                   /codon_start=1
FT                   /product="class I chitinase"
FT                   /db_xref="GOA:Q9M7G7"
FT                   /db_xref="HSSP:1CNS"
FT                   /db_xref="InterPro:IPR016283"
FT                   /db_xref="UniProtKB/TrEMBL:Q9M7G7"
FT                   /protein_id="AAF69780.1"
FT                   /translation="KTNLLLFLLFSLLLSLTSAEQCGRQAGGALCPNGLCCSEFGWCGN
FT                   TEPYCKQPGCQSQCTPGGTPPPGGDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFI
FT                   TAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGWASAPDGPFSWGYCFKQEQNPTS
FT                   DYCQPSATWPCAPGKRYYGRGPMQLSWNYNYGLCGRAIGVDLINNPDLVANDAVIAFKA
FT                   AIWFWMTAQPPKPSCHAVIVGQWQPSDADSAAGRLPGYGVITNIINGGLECGRGQDERV
FT                   ANRIGFYQRYCNIFGVNPGGNLDCYNQRSFGNGLLGAAI"
FT   intron          416..747
FT                   /note="short intron 2a"
XX
SQ   Sequence 1295 BP; 343 A; 296 C; 294 G; 362 T; 0 other;
     aagactaatc ttttactctt tctcctcttc tcacttcttt tatcacttac atcagccgag        60
     caatgtggtc gtcaagccgg aggagcactc tgtcccaacg gtctatgttg cagcgagttt       120
     ggatggtgcg gtaacaccga accatactgt aagcagcctg gctgccaaag ccagtgcacc       180
     cccggcggca ctcctcctcc gggtggcgat ctttcgggca tcatttcaag ttcccagttc       240
     gatgatatgc ttaagcatag gaatgatgct gcttgtcctg ctagaggttt ctacacttac       300
     aacgccttta tcaccgctgc aaagtccttc cccggttttg gcaccaccgg agacaccgcc       360
     acgaggaaga aggaggtcgc cgccttcttc ggccagactt cccatgaaac cacaggtact       420
     cattaacaat taagctttgg ttatttcaaa cgtaatttat agttttgacg tttataataa       480
     tagttaaaac accaaagttt gaatattttc taacatataa attttccgcg atatattata       540
     ttttacaaac aaaatggcca aaaacaataa aattttgttt tggtctttgg tgtttgcgtt       600
     taaaaaattg tttaaatatt ttaacgttgt gactatatat taatgaacaa ctatatatac       660
     ttgtgaaata actgtaatca attattgtta gatgttaatg taaagttgtg actatataat       720
     aatgaaccgg acggttatac cgtccaggtg ggtgggcttc agcaccggac ggaccatttt       780
     catggggcta ctgtttcaag caagaacaga atccaacttc agactactgt caaccaagcg       840
     ccacgtggcc atgcgcacct ggcaaacgct actacggaag aggaccaatg cagctgtcgt       900
     ggaactacaa ttacggtcta tgcggtagag ccataggagt tgacttaatc aacaaccctg       960
     acctcgtagc caatgacgca gtgatcgctt tcaaagccgc gatttggttc tggatgactg      1020
     ctcagcctcc caaaccgtcg tgccacgccg tgatcgtcgg gcagtggcag ccgtcagacg      1080
     ccgacagtgc cgccgggaga ttaccgggtt acggtgtgat tacgaacatc attaacggtg      1140
     gattggagtg cggacgtggt caagacgaga gagtcgcgaa tcgtataggg ttttatcaga      1200
     ggtattgtaa catatttggg gttaatcctg gtggtaatct tgattgttac aaccaaaggt      1260
     cctttggtaa cggcctcctc ggcgctgcta tttag                                 1295
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