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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AF135138; SV 1; linear; genomic DNA; STD; PLN; 1369 BP.
XX
AC   AF135138;
XX
DT   14-MAY-2000 (Rel. 63, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE   Arabis glabra country USA class I chitinase gene, partial cds.
XX
KW   .
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OS   Turritis glabra (tower rockcress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Turritis.
XX
RN   [1]
RP   1-1369
RX   DOI; 10.1073/pnas.97.10.5322
RX   PUBMED; 10805791.
RA   Bishop J.G., Dean A.M., Mitchell-Olds T.;
RT   "Rapid evolution in plant chitinases: molecular targets of selection in
RT   plant-pathogen coevolution";
RL   Proc. Natl. Acad. Sci. U.S.A. 97(10):5322-5327(2000).
XX
RN   [2]
RP   1-1369
RA   Bishop J.G., Mitchell-Olds T., Dean A.M.;
RT   ;
RL   Submitted (16-MAR-1999) to the EMBL/GenBank/DDBJ databases.
RL   Genetics, Max Plank Institute for Chemical Ecology, Tatzendpromenade 1a,
RL   Jena 07745, Germany
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FH   Key             Location/Qualifiers
FH
FT   source          1..1369
FT                   /organism="Turritis glabra"
FT                   /mol_type="genomic DNA"
FT                   /country="USA: Bodega Marine Lab, Sonoma County,
FT                   California"
FT                   /db_xref="taxon:63678"
FT   mRNA            join(<1..409,848..>1369)
FT                   /product="class I chitinase"
FT   CDS             join(<1..409,848..>1369)
FT                   /codon_start=1
FT                   /product="class I chitinase"
FT                   /db_xref="GOA:Q9M7G9"
FT                   /db_xref="HSSP:2BAA"
FT                   /db_xref="InterPro:IPR000726"
FT                   /db_xref="InterPro:IPR001002"
FT                   /db_xref="InterPro:IPR016283"
FT                   /db_xref="InterPro:IPR018371"
FT                   /db_xref="UniProtKB/TrEMBL:Q9M7G9"
FT                   /protein_id="AAF69778.1"
FT                   /translation="LLLFLLFSLLVSFSSAEQCGRQAGGALCPNGLCCSEFGWCGDTEA
FT                   YCKVPGCQSQCTPGGTPPGPTGDLSGIISRSQFEDMLKHRNDAACLAKGFYTYDAFITA
FT                   AKSFPGFGTTGDTAARKKEVAAFFGQTSHETTGGWPTAPDGPFAWGYCFKQERDPPSNY
FT                   CQPSAAWPCARDKRYYGRGPMQLTWNYNYGQCGRAIGVDLLNNPDLVANDAVIAFKAAI
FT                   WFWMTAQPPKPSCHAVIVGQWQPSDADRAAGRLPGYGVITNIINGGLECGRGQDGRVAD
FT                   RIGFYQRYCNIFGVNPGGNLDCYNQRSFV"
FT   intron          410..847
FT                   /note="long intron 1c"
XX
SQ   Sequence 1369 BP; 389 A; 301 C; 300 G; 379 T; 0 other;
     cttttactct ttctcctctt ctcacttctc gtatcatttt catcagccga gcaatgtggt        60
     cgtcaagccg gaggagcact ctgccccaac ggtctatgct gcagtgagtt cggatggtgc       120
     ggtgacactg aagcttactg taaggtgcct ggctgccaaa gccagtgcac tcccggcggt       180
     actcctcctg gccccaccgg cgatctttcg ggcatcattt caagatctca attcgaagat       240
     atgcttaagc ataggaacga cgctgcttgt cttgctaaag gtttctacac ttacgacgcc       300
     tttatcaccg ctgccaagtc cttccccggc tttggcacca ccggagacac cgccgcaagg       360
     aagaaggagg tcgccgcctt cttcggccag acttctcacg aaaccacagg tactgattaa       420
     caattggacg tatattgttt caaaacacaa tttctaagtt ttggcgttta tattaaaaca       480
     tcagaatttg ttgggtttgt tcgtctataa agagttttgg atccaagtgg tcatataacg       540
     aactactaaa ctatatgtta tattaaaaaa ttatatatag cttctcatat ttgggaaaaa       600
     aaaaattcaa acaaaaacac caaatgcaat taataaaaat gttttggtgt tagatgtttg       660
     cgtttacaat taaaacatta tttaaagtat attttaatat ggattcatct aggaaatatc       720
     tacacactac acataaacgc aaataaacaa tcaagaaatt tacgaatatt ccaatttcca       780
     aattatacac ttaaataatg taaaagttgt gactatttaa tgatgaagtg gaaggataca       840
     tgtacaggtg ggtggcccac agcaccggac ggaccatttg catggggcta ctgtttcaag       900
     caagagcggg atcctccttc aaactactgt caaccgagtg ccgcatggcc atgtgcacga       960
     gacaaacgct actacggacg aggaccaatg cagctgacgt ggaactacaa ttacggtcaa      1020
     tgcggtagag ccataggagt tgatttactc aacaaccctg acctcgtagc caatgatgca      1080
     gtgatcgctt tcaaagcagc tatttggttt tggatgactg ctcagcctcc caaaccttcg      1140
     tgccacgctg ttatcgtcgg ccagtggcag ccgtcagatg ctgatcgtgc cgctggaaga      1200
     ttacccggtt atggagtgat tacgaacatc attaacggtg gattggagtg cggacgtggt      1260
     caagacggga gagtcgcgga tcgtataggg ttttatcaga ggtattgtaa catatttggg      1320
     gttaatcctg gaggtaatct tgattgttac aaccaaagat ccttcgtta                  1369
//
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