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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AF135137; SV 1; linear; genomic DNA; STD; PLN; 1242 BP.
XX
AC   AF135137;
XX
DT   14-MAY-2000 (Rel. 63, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE   Arabis fecunda country USA class I chitinase gene, partial cds.
XX
KW   .
XX
OS   Boechera fecunda
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Boechera.
XX
RN   [1]
RP   1-1242
RX   DOI; 10.1073/pnas.97.10.5322
RX   PUBMED; 10805791.
RA   Bishop J.G., Dean A.M., Mitchell-Olds T.;
RT   "Rapid evolution in plant chitinases: molecular targets of selection in
RT   plant-pathogen coevolution";
RL   Proc. Natl. Acad. Sci. U.S.A. 97(10):5322-5327(2000).
XX
RN   [2]
RP   1-1242
RA   Bishop J.G., Mitchell-Olds T., Dean A.M.;
RT   ;
RL   Submitted (16-MAR-1999) to the EMBL/GenBank/DDBJ databases.
RL   Genetics, Max Plank Institute for Chemical Ecology, Tatzendpromenade 1a,
RL   Jena 07745, Germany
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1242
FT                   /organism="Boechera fecunda"
FT                   /mol_type="genomic DNA"
FT                   /country="USA: Lolo Cty, MT"
FT                   /db_xref="taxon:93887"
FT   mRNA            join(<1..435,695..1242)
FT                   /product="class I chitinase"
FT   CDS             join(<1..435,695..1242)
FT                   /codon_start=3
FT                   /product="class I chitinase"
FT                   /db_xref="GOA:Q9M7H0"
FT                   /db_xref="HSSP:2BAA"
FT                   /db_xref="InterPro:IPR000726"
FT                   /db_xref="InterPro:IPR001002"
FT                   /db_xref="InterPro:IPR016283"
FT                   /db_xref="InterPro:IPR018371"
FT                   /db_xref="UniProtKB/TrEMBL:Q9M7H0"
FT                   /protein_id="AAF69777.1"
FT                   /translation="GKMKTNLLLFLLFSLLLSLTSAEQCGRQAGGALCPNGLCCSEFGW
FT                   CGDTEPYCKQPGCQSQCTPGGTPPRPTPTGDLSGIISSSQFDDMLKHRNDAACPARGFY
FT                   TYNAFITAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGWASAPDGPFSWGYCFKQ
FT                   EQNPTSNYCEPSATWPCAPGKRYYGRGPMQLSWNYNYGLCGRAIGVDLLNNPDLVANDA
FT                   VIAFKAAIWFWMTARPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECGR
FT                   GQDGRVADRIGFYQRYCNIFGVNPGGNLDCYNQRSFGNGLLDAAI"
FT   intron          436..694
FT                   /note="short intron"
XX
SQ   Sequence 1242 BP; 326 A; 293 C; 283 G; 340 T; 0 other;
     aagggaaaat gaagactaat cttttactct ttctcctctt ctcacttctt ttatcactta        60
     catcagccga gcaatgtggt cgtcaagccg gaggagcact ctgtcccaac ggtctatgtt       120
     gcagcgagtt tggatggtgc ggtgacaccg aaccatactg taagcagcct ggctgccaaa       180
     gccagtgcac tcccggcggt actcctccga gacccacgcc caccggcgat ctttcgggca       240
     tcatttcaag ttctcagttc gatgatatgc ttaagcatag gaatgatgct gcttgtcctg       300
     ctagaggttt ctacacttac aacgccttta tcaccgctgc aaagtccttc cccggttttg       360
     gcaccaccgg agacaccgcc acgaggaaaa aggagatcgc cgccttcttc ggccagactt       420
     cccatgaaac cacaggtact cattaacaat taagctttgg ttatttcaaa cgtaatttat       480
     agttttgaca tttataataa tagttaaaaa aacaaagttt gaatattttc aaatatatag       540
     attctccaca atatggttat ttcaaacttc tataccgtat atcttttttt ttatttgggt       600
     aaaaaactca ttctaaaaac tgtaatcaat tattgttaga tgttaatgta aagttgtgac       660
     tatatattaa tgaaccggac ggttatatat ccaggtgggt gggcttcagc accggacgga       720
     ccattttcat ggggctactg tttcaagcaa gaacagaatc caacttcaaa ctactgtgaa       780
     ccaagcgcca cgtggccatg cgcacctggc aaacgctact acggaagagg accaatgcag       840
     ctgtcgtgga actacaatta cggtctatgc ggtagagcca taggagttga cttactcaac       900
     aaccctgacc tcgtagccaa cgacgcagtg atcgctttca aagccgcgat ttggttctgg       960
     atgactgctc ggcctcccaa accgtcgtgc cacgccgtga tcgctgggca gtggcagccg      1020
     tcagacgctg accgtgccgc cgggagatta ccaggttacg gtgtgattac gaacatcatt      1080
     aacggtggat tggagtgcgg acgtggtcaa gacgggagag tcgcggatcg tatagggttt      1140
     tatcagaggt attgtaacat atttggggtt aatcctggtg gtaatcttga ttgttacaat      1200
     caaaggtcct ttggtaacgg cctcctcgac gctgctattt aa                         1242
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