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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AF135134; SV 1; linear; genomic DNA; STD; PLN; 1201 BP.
XX
AC   AF135134;
XX
DT   14-MAY-2000 (Rel. 63, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE   Arabis blepharophylla class I chitinase gene, partial cds.
XX
KW   .
XX
OS   Arabis blepharophylla
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabis.
XX
RN   [1]
RP   1-1201
RX   DOI; 10.1073/pnas.97.10.5322
RX   PUBMED; 10805791.
RA   Bishop J.G., Dean A.M., Mitchell-Olds T.;
RT   "Rapid evolution in plant chitinases: molecular targets of selection in
RT   plant-pathogen coevolution";
RL   Proc. Natl. Acad. Sci. U.S.A. 97(10):5322-5327(2000).
XX
RN   [2]
RP   1-1201
RA   Bishop J.G., Mitchell-Olds T., Dean A.M.;
RT   ;
RL   Submitted (16-MAR-1999) to the EMBL/GenBank/DDBJ databases.
RL   Genetics, Max Plank Institute for Chemical Ecology, Tatzendpromenade 1a,
RL   Jena 07745, Germany
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1201
FT                   /organism="Arabis blepharophylla"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:81973"
FT   mRNA            join(<1..326,658..>1201)
FT                   /product="class I chitinase"
FT   CDS             join(<1..326,658..>1201)
FT                   /codon_start=2
FT                   /product="class I chitinase"
FT                   /db_xref="GOA:Q9M7H3"
FT                   /db_xref="HSSP:2BAA"
FT                   /db_xref="InterPro:IPR000726"
FT                   /db_xref="InterPro:IPR001002"
FT                   /db_xref="InterPro:IPR016283"
FT                   /db_xref="InterPro:IPR018371"
FT                   /db_xref="UniProtKB/TrEMBL:Q9M7H3"
FT                   /protein_id="AAF69774.1"
FT                   /translation="RQAGGALCPNGLCCSEFGWCGNTEPYCKLPGCQSQCTPGDLSDII
FT                   SSSQFDDMLKNRNAASCPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTS
FT                   HETTGGWASAPDGPFSWGYCFKQEQNPTSDYCQPSATWPCAPGKRYYGRGPMQLSWNYN
FT                   YGLCGRAIGVDLINNPDLVASDTVIAFKAGIWFWMTAQPPKPSCHAVIVGQWQPSDADS
FT                   AAGRLPGYGVITNIINGGLECGRGQDERVANRIGFYQTYCNIFGVNPGDNLDCYNQRSF
FT                   GNGLLGAA"
FT   intron          327..657
FT                   /note="midlength intron (I3)"
XX
SQ   Sequence 1201 BP; 329 A; 266 C; 274 G; 332 T; 0 other;
     tcgtcaagcc ggaggagcac tctgtcccaa cggtctatgt tgcagcgagt ttggatggtg        60
     cggtaacacc gaaccatact gtaagctgcc tggctgccaa agccagtgca ctcccggcga       120
     tctttcggac atcatttcaa gttcccagtt cgatgatatg cttaagaata ggaatgctgc       180
     ttcttgtcct gctagaggtt tctacactta caacgccttt atcaccgctg caaagtcctt       240
     ccccggtttt ggcaccaccg gagacaccgc cacgaggaag aaggaggtcg ccgccttctt       300
     cggccagact tcccatgaaa ccacaggtac tcattaacaa ttaagctttg gttatttcaa       360
     acgtaattta tagttttgac atttataata atagttaaaa accaaagttt gaatattttc       420
     taacatataa attttccgcg atatattata ttttacaaac aaaatggcca aaaacaataa       480
     aattttgttt tggtctttgg tgtttgcgtt taaaaaattg tttaaatatt ttaacgttgt       540
     gactatacat taatgaacaa ctatatatac ttgtgaaata actgtaatca attattgtta       600
     gatgttaatg taaagttgtg actatataat aatgaaccgg acggttatat cgtccaggtg       660
     ggtgggcttc agcaccggac ggaccatttt catggggcta ctgtttcaag caagaacaga       720
     atccaacttc agactactgt caaccaagcg ccacgtggcc atgcgcacct ggcaaacgct       780
     actacggaag aggaccaatg cagctgtcgt ggaactacaa ttacggtcta tgcggtagag       840
     ccataggagt tgacttaatc aacaaccctg acctcgtagc cagcgacaca gtgatcgctt       900
     tcaaagccgg gatttggttc tggatgactg ctcagcctcc aaaaccgtcg tgccacgccg       960
     tgatcgtcgg gcagtggcag ccgtcagacg ccgacagtgc cgccgggaga ttaccgggtt      1020
     acggtgtgat tacgaacatc attaacggtg gattggagtg cggacgtggt caagacgaga      1080
     gagtcgctaa tcgtataggg ttttatcaga cgtattgtaa catatttggg gttaatcctg      1140
     gtgataatct tgattgttac aaccaaaggt cctttggtaa cggcctcctc ggcgctgcta      1200
     t                                                                      1201
//
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