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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AF135133; SV 1; linear; genomic DNA; STD; PLN; 1308 BP.
XX
AC   AF135133;
XX
DT   14-MAY-2000 (Rel. 63, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE   Arabis blepharophylla country USA class I chitinase gene, partial cds.
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KW   .
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OS   Arabis blepharophylla
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabis.
XX
RN   [1]
RP   1-1308
RX   DOI; 10.1073/pnas.97.10.5322
RX   PUBMED; 10805791.
RA   Bishop J.G., Dean A.M., Mitchell-Olds T.;
RT   "Rapid evolution in plant chitinases: molecular targets of selection in
RT   plant-pathogen coevolution";
RL   Proc. Natl. Acad. Sci. U.S.A. 97(10):5322-5327(2000).
XX
RN   [2]
RP   1-1308
RA   Bishop J.G., Mitchell-Olds T., Dean A.M.;
RT   ;
RL   Submitted (16-MAR-1999) to the EMBL/GenBank/DDBJ databases.
RL   Genetics, Max Plank Institute for Chemical Ecology, Tatzendpromenade 1a,
RL   Jena 07745, Germany
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FH   Key             Location/Qualifiers
FH
FT   source          1..1308
FT                   /organism="Arabis blepharophylla"
FT                   /mol_type="genomic DNA"
FT                   /country="USA: Bodega Marine Lab, Sonoma County,
FT                   California"
FT                   /db_xref="taxon:81973"
FT   mRNA            join(<1..403,786..>1308)
FT                   /product="class I chitinase"
FT   CDS             join(<1..403,786..>1308)
FT                   /codon_start=1
FT                   /product="class I chitinase"
FT                   /db_xref="GOA:Q9M7H4"
FT                   /db_xref="HSSP:2BAA"
FT                   /db_xref="InterPro:IPR000726"
FT                   /db_xref="InterPro:IPR001002"
FT                   /db_xref="InterPro:IPR016283"
FT                   /db_xref="InterPro:IPR018371"
FT                   /db_xref="UniProtKB/TrEMBL:Q9M7H4"
FT                   /protein_id="AAF69773.1"
FT                   /translation="LFLFLIFSFLLTFSSGEQCGRQAGGALCPGGLCCSEFGWCGDTDP
FT                   YCKQPGCQSQCTPGGTPPTGDLSGIITSSQFDDMLKHRNDGACPARGFYTYDAFITAAK
FT                   SFSGFGTTGDTAARKKEIAAFFGQTSHETTGGWATAPDGPFSWGYCFKQEQNPSSDYCS
FT                   PSATWPCAPGKRYYGRGPMQLTWNYNYGQCGRAIGADLLNNPDLVSNDAVIAFKAAIWF
FT                   WMTPQSPKPSCHDVITGQWQPSDADRAAGRLPGYGVITNIINGGLECGHGQDSRVADRI
FT                   GFYERYCNIFGVNPGSNLDCYNQRSFV"
FT   intron          404..785
FT                   /note="intron 1b"
XX
SQ   Sequence 1308 BP; 358 A; 290 C; 284 G; 376 T; 0 other;
     ctttttctct ttctcatctt ttcatttctc ttaacatttt cctccggcga gcaatgtggt        60
     cgtcaagccg gaggagctct ctgccccggc ggtctatgtt gcagcgagtt cggttggtgc       120
     ggcgacaccg atccatactg taagcagcct ggttgtcaaa gccagtgcac tcccggcggt       180
     actcctccta cgggtgatct ttcaggcatc attacaagtt ctcaattcga tgacatgctt       240
     aagcatagga acgacggtgc ttgtcctgct agaggtttct atacttatga tgcctttatc       300
     accgccgcta agtctttctc tggctttggt accaccggag acaccgccgc gaggaagaag       360
     gagatcgccg ccttctttgg ccaaacttcc cacgaaacca ccggtatacg aatcactata       420
     atattttaga aaaaagtgta atcactagta ttatatgttt caaacgtaat cgcaaatgaa       480
     aagtcaacta acaccaaatt aacatttata aaacatatat ccaattttcc atagaatatt       540
     tttgaaaaaa gtgtaaaaac aaacgtcatt tcatttgcat tttggatgtt tatgattagc       600
     aaataattct tttaccgtgt tacaattacc aaaaagagaa acttaatata tatatatttt       660
     ttagtttgtt tgaaaaatgt attcgtgatt acgtttcaat attacacact tgattaatta       720
     aattgttaca tgttttattg actaatgcac attaaccgaa atggacgatc attacatgtg       780
     tgcaggtggg tgggccacag caccggacgg accattctca tggggttact gtttcaagca       840
     agaacaaaac ccttcctcag actactgttc accgagcgcc acgtggccat gcgcacctgg       900
     caaacgttac tacggaagag gaccgatgca gctgacgtgg aactataact acggacagtg       960
     cggtcgagcc ataggagctg acttactgaa caaccctgac cttgtgtcta acgacgcagt      1020
     gatcgctttc aaagccgcga tttggttctg gatgactcct cagtctccta aaccgtcgtg      1080
     ccacgacgtg atcacgggtc aatggcagcc ctcagacgct gaccgtgccg cgggaagatt      1140
     accgggttac ggagtgatta cgaatattat taacggtgga ttggagtgtg gtcatggcca      1200
     agactctaga gtggcggatc gtatagggtt ttatgagagg tattgtaaca tatttggggt      1260
     taatcctgga agtaaccttg attgttacaa ccaaagatcc ttcgttaa                   1308
//
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