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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AF135132; SV 1; linear; genomic DNA; STD; PLN; 1183 BP.
XX
AC   AF135132;
XX
DT   14-MAY-2000 (Rel. 63, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE   Arabis gunnisoniana from USA class I chitinase gene, partial cds.
XX
KW   .
XX
OS   Boechera gunnisoniana
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Boechera.
XX
RN   [1]
RP   1-1183
RX   DOI; 10.1073/pnas.97.10.5322
RX   PUBMED; 10805791.
RA   Bishop J.G., Dean A.M., Mitchell-Olds T.;
RT   "Rapid evolution in plant chitinases: molecular targets of selection in
RT   plant-pathogen coevolution";
RL   Proc. Natl. Acad. Sci. U.S.A. 97(10):5322-5327(2000).
XX
RN   [2]
RP   1-1183
RA   Bishop J.G., Mitchell-Olds T.;
RT   ;
RL   Submitted (16-MAR-1999) to the EMBL/GenBank/DDBJ databases.
RL   Genetics, Max Planck Institute for Chemical Ecology, Tatzendpromenade 1a,
RL   Jena 07745, Germany
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1183
FT                   /organism="Boechera gunnisoniana"
FT                   /mol_type="genomic DNA"
FT                   /country="USA: Gunnison County, CO"
FT                   /note="subgroup: short intron"
FT                   /db_xref="taxon:93888"
FT   mRNA            join(<1..357,640..>1183)
FT                   /product="class I chitinase"
FT   CDS             join(<1..357,640..>1183)
FT                   /codon_start=3
FT                   /product="class I chitinase"
FT                   /db_xref="GOA:Q9M7H5"
FT                   /db_xref="HSSP:2BAA"
FT                   /db_xref="InterPro:IPR000726"
FT                   /db_xref="InterPro:IPR001002"
FT                   /db_xref="InterPro:IPR016283"
FT                   /db_xref="InterPro:IPR018371"
FT                   /db_xref="UniProtKB/TrEMBL:Q9M7H5"
FT                   /protein_id="AAF69772.1"
FT                   /translation="RQAGGAFCPNGLCCSEFGWCGDTEPYCKQPGCQSQCTPGGTPPGP
FT                   TPTGDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTSGDTATRKK
FT                   EIAAFFGQTSHETTGGWASAPDGPFSWGYCFKQEQNPTSSYCEPSATWPCAPGKRYYGR
FT                   GPMQLSWNYNYGLCGRAIGVDLLNNPDLVANDAVIAFKAAIWFWMAAQPPKPSCHAVIA
FT                   GQWQPSDADRAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGVNPGG
FT                   NLDCYNQRPFGNGLLGAA"
FT   intron          358..639
FT                   /note="short intron"
XX
SQ   Sequence 1183 BP; 302 A; 280 C; 283 G; 318 T; 0 other;
     gtcgtcaagc cggaggagca ttctgtccca acggtctatg ttgcagcgag tttggatggt        60
     gcggtgacac cgaaccatac tgtaagcagc ctggctgcca aagccagtgc actcccggcg       120
     gtactcctcc gggacccacg cccaccggcg atctttcggg catcatttca agttctcagt       180
     tcgatgatat gcttaagcat aggaatgatg ctgcttgtcc tgctagaggt ttctacactt       240
     acaacgcctt tatcaccgct gcaaagtcct tccccggttt tggcacctcc ggagacaccg       300
     ccacgaggaa gaaggagatc gccgccttct tcggccagac ttcccatgaa accacaggta       360
     ctcattaaca attaagcttt ggttatttca aacgtaattt atagttttga catttataat       420
     aatagttaga aaaacaaagt ttgaatattt tcaaatatat agattttcca caatatggtt       480
     acttcaaact tctataccgt gtatcctttt tttttatttg ggtaaaaaaa actcattcta       540
     aaactgtact atatattgat tacatgtaat caattactgt tagatgttga tgtaaagttg       600
     tgactatata ttaatgaacc ggatggttat atcatccagg tgggtgggct tcagcaccgg       660
     acggaccatt ttcatggggc tactgtttca agcaagaaca gaatccaact tcaagctact       720
     gtgaaccaag cgccacgtgg ccatgcgcac ctggcaaacg ctactacgga agaggaccaa       780
     tgcagctgtc gtggaactac aattacggtc tatgcggtag agccatagga gttgacttac       840
     tcaacaaccc tgacctcgta gccaacgacg cagtgatcgc tttcaaagcc gcgatttggt       900
     tctggatggc tgctcagcct cccaaaccgt cgtgccacgc cgtgatcgct gggcagtggc       960
     agccgtcaga cgccgaccgt gccgccggga gattaccggg ttacggtgtg attacgaaca      1020
     tcattaacgg tggattggag tgcggacgtg gtcaagacgg gagagtcgcg gatcgtatag      1080
     ggttttatca gaggtattgt aacatatttg gggttaatcc tggtggtaat cttgattgtt      1140
     acaaccaaag gccctttggt aacggcctcc tcggcgctgc tat                        1183
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