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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AF135131; SV 1; linear; genomic DNA; STD; PLN; 793 BP.
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AC   AF135131;
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DT   14-MAY-2000 (Rel. 63, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 2)
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DE   Arabis holboellii from USA class I chitinase gene, partial cds.
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KW   .
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OS   Boechera holboellii
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Boechera.
XX
RN   [1]
RP   1-793
RX   DOI; 10.1073/pnas.97.10.5322
RX   PUBMED; 10805791.
RA   Bishop J.G., Dean A.M., Mitchell-Olds T.;
RT   "Rapid evolution in plant chitinases: molecular targets of selection in
RT   plant-pathogen coevolution";
RL   Proc. Natl. Acad. Sci. U.S.A. 97(10):5322-5327(2000).
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RN   [2]
RP   1-793
RA   Bishop J.G., Mitchell-Olds T.;
RT   ;
RL   Submitted (16-MAR-1999) to the EMBL/GenBank/DDBJ databases.
RL   Genetics, Max Planck Institute for Chemical Ecology, Tatzendpromenade 1a,
RL   Jena 07745, Germany
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FH   Key             Location/Qualifiers
FH
FT   source          1..793
FT                   /organism="Boechera holboellii"
FT                   /mol_type="genomic DNA"
FT                   /country="USA: Missoula Cty, MT"
FT                   /note="subgroup: short intron"
FT                   /db_xref="taxon:93890"
FT   mRNA            join(<1..384,666..>793)
FT                   /product="class I chitinase"
FT   CDS             join(<1..384,666..>793)
FT                   /codon_start=3
FT                   /product="class I chitinase"
FT                   /db_xref="GOA:Q9M7H6"
FT                   /db_xref="HSSP:1CNS"
FT                   /db_xref="InterPro:IPR000726"
FT                   /db_xref="UniProtKB/TrEMBL:Q9M7H6"
FT                   /protein_id="AAF69771.1"
FT                   /translation="SLLLSLASAEQCGRQAGGVFCPNGLCCSEFGWCGDTEPYCKQPGC
FT                   QSQCTPPGPTPTGDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGT
FT                   SGDTATRKKEIAAFFGQTSHETTGGWASAPDGPFSWGYCFKQEQNPTSNYCEPSATWPC
FT                   APGKRYY"
FT   intron          385..665
FT                   /note="short intron"
XX
SQ   Sequence 793 BP; 216 A; 185 C; 160 G; 232 T; 0 other;
     tctcacttct tttatcactt gcatcagccg agcaatgtgg tcgtcaagcc ggaggagtat        60
     tctgtcccaa cggtctatgt tgcagcgagt ttggatggtg cggtgacacc gaaccatact       120
     gtaagcagcc tggctgccaa agccagtgca ctcctccggg acccacgccc accggcgatc       180
     tttcgggcat catttcaagt tctcagttcg atgatatgct taagcatagg aatgatgctg       240
     cttgtcctgc tagaggtttc tacacttaca acgcctttat caccgctgca aagtccttcc       300
     ccggttttgg cacctccgga gacaccgcca cgaggaagaa ggagatcgcc gccttcttcg       360
     gccagacttc ccatgaaacc acaggtactc attaacaatt aagctttggt tatttcaaac       420
     gtaatttata gttttgacat ttataataat agttagaaaa acaaagtttg aatattttca       480
     aatatataga ttttccacaa tatggttact tcaaacttct ataccgtgta tccttttttt       540
     ttatttgggt aaaaaaactc attctaaaac tgtactatat attgattaca tgtaatcaat       600
     tactgttaga tgttgatgta aagttgtgac tatatattaa tgaaccggat ggttatatca       660
     tccaggtggg tgggcttcag caccggacgg accattttca tggggctact gtttcaagca       720
     agaacagaat ccaacttcaa actactgtga accaagcgcc acgtggccat gcgcacctgg       780
     caaacgctac tac                                                          793
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