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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AF135130; SV 1; linear; genomic DNA; STD; PLN; 1024 BP.
XX
AC   AF135130;
XX
DT   14-MAY-2000 (Rel. 63, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 2)
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DE   Arabis holboellii from Denmark class I chitinase gene, partial cds.
XX
KW   .
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OS   Boechera holboellii
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Boechera.
XX
RN   [1]
RP   1-1024
RX   DOI; 10.1073/pnas.97.10.5322
RX   PUBMED; 10805791.
RA   Bishop J.G., Dean A.M., Mitchell-Olds T.;
RT   "Rapid evolution in plant chitinases: molecular targets of selection in
RT   plant-pathogen coevolution";
RL   Proc. Natl. Acad. Sci. U.S.A. 97(10):5322-5327(2000).
XX
RN   [2]
RP   1-1024
RA   Bishop J.G., Mitchell-Olds T.;
RT   ;
RL   Submitted (16-MAR-1999) to the EMBL/GenBank/DDBJ databases.
RL   Genetics, Max Planck Institute for Chemical Ecology, Tatzendpromenade 1a,
RL   Jena 07745, Germany
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FH   Key             Location/Qualifiers
FH
FT   source          1..1024
FT                   /organism="Boechera holboellii"
FT                   /mol_type="genomic DNA"
FT                   /country="Denmark: Greenland"
FT                   /note="subgroup: short intron"
FT                   /db_xref="taxon:93890"
FT   mRNA            join(<1..355,481..>1024)
FT                   /product="class I chitinase"
FT   CDS             join(<1..355,481..>1024)
FT                   /codon_start=1
FT                   /product="class I chitinase"
FT                   /db_xref="GOA:Q9M7H7"
FT                   /db_xref="HSSP:2BAA"
FT                   /db_xref="InterPro:IPR016283"
FT                   /db_xref="UniProtKB/TrEMBL:Q9M7H7"
FT                   /protein_id="AAF69770.1"
FT                   /translation="RQAGGALCPNGLCCSEFGWCGDTEPYCKQPGCQSQCTPGGTPPGP
FT                   TPTGDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKK
FT                   EIAAFFGQTSHETTGGWASAPDGPFSWGYCFKQEVNPNSDYCEPSATWPCAXGKRYYGR
FT                   GPIQLSWNYNYGLCGRAIGVDLLNNPDLVANDAVIAFKAAIWFWMTAQPPKPSCHAVIV
FT                   GQWQPSDADSAAGRLPGYGVITNIINGGLECGRGQDERVANRIGFYQRYCNIFGVNPGD
FT                   NLDCYNQRPFGNGLLGAA"
FT   intron          354..480
FT                   /note="short intron"
XX
SQ   Sequence 1024 BP; 259 A; 258 C; 254 G; 252 T; 1 other;
     cgtcaagccg gaggagcact ctgtcccaac ggtctatgtt gcagcgagtt tggatggtgc        60
     ggtgacaccg aaccatactg taagcagcct ggctgccaaa gccagtgcac tcccggcggt       120
     actcctccgg gacccacgcc caccggcgat ctttcgggca tcatttcaag ttctcagttc       180
     gatgatatgc ttaagcatag gaatgatgct gcttgtcctg ctagaggttt ctacacttac       240
     aacgccttta tcaccgctgc aaagtccttc cccggttttg gcaccaccgg agacaccgcc       300
     acgaggaaga aggagatcgc cgccttcttc ggccagactt cccatgaaac cacaggtact       360
     cattaacaat taagctttgg ttatttcaaa cgtaatttat agttttgaca tttataataa       420
     tagttaaaaa accaaagttt gaatattttc aaatatatag attttccaca atacatccag       480
     gtgggtgggc ttcagcaccg gacggaccat tttcatgggg ctactgtttc aagcaagaag       540
     tgaatccaaa ttcagactac tgtgaaccaa gcgccacgtg gccatgcgca nttggcaaac       600
     gctactacgg aagaggacca atacagctgt cgtggaacta caattacggt ctatgcggta       660
     gagccatagg agttgactta ctcaacaacc ctgacctcgt agccaacgac gcagtgatcg       720
     ctttcaaagc cgcgatttgg ttctggatga ctgctcagcc tcccaaaccg tcgtgccacg       780
     ccgtgatcgt cgggcagtgg cagccgtcag acgccgacag tgccgccggg agattaccgg       840
     gttacggtgt gattacgaac atcattaacg gtggattgga gtgcggacgt ggtcaagacg       900
     agagagtcgc gaatcgtata gggttttatc agaggtattg taacatattt ggggttaatc       960
     ctggtgataa tcttgattgt tacaaccaaa ggccctttgg taacggcctc ctcggcgctg      1020
     ctat                                                                   1024
//
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