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EBI DbfetchID AF096317; SV 1; linear; genomic DNA; STD; PRO; 3600 BP. XX AC AF096317; XX DT 08-FEB-1999 (Rel. 58, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Desulfovibrio gigas putative methyl-accepting chemotaxis protein (mcp), DE putative chemotaxis protein CheW (cheW), and neelaredoxin (nlr) genes, DE complete cds. XX KW . XX OS Desulfovibrio gigas OC Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; OC Desulfovibrionaceae; Desulfovibrio. XX RN [1] RP 1-3600 RX DOI; 10.1046/j.1432-1327.1999.00025.x RX PUBMED; 9914498. RA Silva G., Oliveira S., Gomes C.M., Pacheco I., Liu M.Y., Xavier A.V., RA Teixeira M., LeGall J., Rodrigues-Pousada C.; RT "Desulfovibrio gigas neelaredoxin. A novel superoxide dismutase integrated RT in a putative oxygen sensory operon of an anaerobe"; RL Eur. J. Biochem. 259(1-2):235-243(1999). XX RN [2] RP 1-3600 RA Silva G., Oliveira S., Gomes C.M., Pacheco I., Liu M.Y., Xavier A.V., RA Teixeira M., LeGall J., Rodrigues-Pousada C.; RT ; RL Submitted (01-OCT-1998) to the EMBL/GenBank/DDBJ databases. RL Molecular Genetics, Instituto de Tecnologia Quimica e Biologica, Rua da RL Quinta Grande 6, Oeiras 2780, Portugal XX FH Key Location/Qualifiers FH FT source 1..3600 FT /organism="Desulfovibrio gigas" FT /strain="ATCC19364" FT /mol_type="genomic DNA" FT /note="Desulfovibrio gigas LeGall" FT /db_xref="taxon:879" FT CDS 302..2251 FT /codon_start=1 FT /transl_table=11 FT /gene="mcp" FT /product="putative methyl-accepting chemotaxis protein" FT /note="MCP-like" FT /db_xref="GOA:Q9ZA82" FT /db_xref="HSSP:1QU7" FT /db_xref="InterPro:IPR003660" FT /db_xref="UniProtKB/TrEMBL:Q9ZA82" FT /protein_id="AAD13198.1" FT /translation="MQWFNNLKIGTRLIASSILVLGLMGGVGWLGMSSMQTTNALLEEI FT YENNLKPIVHLADANAEFIKFGRNQYRIFISTNDQDAEEFVKRGDENIARTNKALADYT FT KATLTGKERELYDTFKPAYDAYLAENAKLRQMMRNKEDKDVITDFVLNRVAPLGVLPDQ FT LLSDMAEENRNEAEKAAAQAHGVYLEARERMFWVIGVAVLLGLASGVFLSRLISRGVRQ FT CVEVAQALAVGDLTKQLTIRQRDEIGQMAEAMRAVAAAEHDVAGKLDKLSRGDLGIEVM FT PRSEQDTLMRAIGSIVLAERDVAEKMKQVAEGDLRIKVAPRSEQDELVRAIAEMIERVT FT QIVDEVRTGAQNVASGDEEMSASSETLSQGASEQAASVEQCSSSMEEMSSSINQNAENA FT RQTGSIASKAAQDAKESGEAVHNTVAAMKEIAGKISIIEEIARQTDLLALNAAVEAARA FT GEHGRGFAVVASEVRKLAERSQTAAAEINKLSSTSTAVAERAGTLLEKLVPDIQKTADL FT VQEIAATSQEQNSGAGQVNLALQQLDQVVQQNASASEELASTAEELSAQAEQLQAAMDF FT FITDGKVAARTVRASVARPAPARVAARPAPKRLPAARRAGTTGATGATGVHLDLSRGEV FT EDDDLGFERFGADT" FT CDS 2271..2777 FT /codon_start=1 FT /transl_table=11 FT /gene="cheW" FT /product="putative chemotaxis protein CheW" FT /db_xref="GOA:Q9ZA81" FT /db_xref="InterPro:IPR002545" FT /db_xref="UniProtKB/TrEMBL:Q9ZA81" FT /protein_id="AAD13199.1" FT /translation="MTASLSEGVMRLLTLTLDNVYFALDIHCVREILDMTDITSIPHTP FT EYMRGVVNVRGSAVPVVDLRLKFGLPAAERTLNTRIVILEIPRGEGVAAIGAIADSVRE FT VLEVETARIDPPPRMGTGIRADFIRGICRQDERFLLILDAAKVFTTDEVLSLDELGAQP FT GPVVA" FT CDS 2955..3347 FT /codon_start=1 FT /transl_table=11 FT /gene="nlr" FT /product="neelaredoxin" FT /db_xref="GOA:O50258" FT /db_xref="HSSP:1DQI" FT /db_xref="InterPro:IPR002742" FT /db_xref="UniProtKB/Swiss-Prot:O50258" FT /protein_id="AAD13200.1" FT /translation="MKMCDMFQTADWKTEKHVPAIECDDAVAADAFFPVTVSLGKEIAH FT PNTTEHHIRWIRCYFKPEGDKFSYEVGSFEFTAHGECAKGPNEGPVYTNHTVTFQLKIK FT TPGVLVASSFCNIHGLWESSKAVALK" XX SQ Sequence 3600 BP; 744 A; 1076 C; 1144 G; 636 T; 0 other; acacggagag cgctccgcgt gcggcgtgcg tgctgacaac ctgatccagt aacaaatata 60 acgcattgta atatctcatt tatggcgaat tgtcgtcctg cgtggcgcat gggaggtctg 120 cacgttttat tcatagggag taaccaccta acacctgggg agaagtgctg gccagccgcc 180 ccgcaccaac cggttgggaa gaggaataac attttctttt ccatggagat acggtatcca 240 tttttccggt ctggcctgga ctgtggcatg ggaggataaa cactaacgct gaggggtttc 300 catgcagtgg ttcaacaatt tgaagatagg cactcggctc atcgcaagtt ccatactcgt 360 cctcgggctc atggggggcg tgggatggct ggggatgtcc agcatgcaga ccaccaatgc 420 gttgctggag gaaatctacg aaaacaacct caagccgatt gtgcaccttg cagacgccaa 480 tgccgagttc atcaagtttg gccgcaacca ataccgcatc ttcatcagca ccaatgacca 540 ggacgctgag gaattcgtca agcgcggcga tgagaatatc gcccggacca acaaggcgtt 600 ggcggactac accaaggcga ccctgacagg caaagagcgc gaactgtacg atacattcaa 660 gcctgcctat gacgcctacc ttgccgaaaa cgccaagctc cgccagatga tgcgcaacaa 720 ggaagacaag gacgtcatca cggacttcgt gctcaaccgc gtggcgcccc tcggcgtgtt 780 gcccgaccag ctgctgagcg acatggccga ggagaaccgc aatgaggccg aaaaggccgc 840 cgcacaggcg cacggcgtct atctcgaagc gcgcgagcgc atgttctggg tcatcggcgt 900 ggccgtgctg ctggggctgg cctcgggggt gttcctgtcc cggctcatct cccgtggcgt 960 gcgccagtgc gtggaggtgg cccaggccct ggccgtgggt gatttgacca agcagctcac 1020 catccgccag agggatgaaa tcggccagat ggccgaggcc atgcgcgccg tggccgccgc 1080 cgaacatgat gtggccggca agctcgataa gctttcccga ggcgatctgg gcattgaggt 1140 gatgccgcgc tccgaacagg acaccctcat gcgcgccatt ggcagcatcg tcctggccga 1200 gcgtgatgtg gcggagaaga tgaaacaggt ggccgaaggc gatttgcgca tcaaggtggc 1260 cccgcgttcc gaacaggacg agctcgtgcg cgccattgcc gagatgatcg aacgcgtgac 1320 gcagatcgtc gacgaggtgc ggaccggcgc gcagaacgtg gcctcgggcg acgaggagat 1380 gagcgccagt tccgagacgc tctcccaggg cgcgtctgaa caggcggctt cggtggagca 1440 gtgctcgtcg tccatggaag aaatgtcctc ctccatcaac caaaatgccg agaatgcccg 1500 ccagaccggg tccatcgcct ccaaggccgc ccaggacgcc aaggaatccg gcgaggccgt 1560 gcacaacacc gtggcggcca tgaaggagat tgccggcaag atttccatca tcgaggaaat 1620 cgcccggcag acggatttgc tggccttgaa cgccgcagtg gaagccgcac gcgccggcga 1680 gcatggccgc ggctttgccg tagtcgcctc ggaagtgcgc aagctggctg agcgcagcca 1740 gacggccgcc gcggaaatca acaagctttc ttccacctcc acggccgtgg ccgagcgcgc 1800 cggcacgctg ctggaaaagc tggtgccgga catccagaag acggcggatc tggtgcagga 1860 aatcgccgcc accagccagg aacagaactc cggagccggc caggtgaatc tggccctgca 1920 gcagctggat caggtggtgc agcagaacgc ctcggcctcc gaggagctgg ccagcacggc 1980 ggaggagctt tccgcccagg ccgagcagct ccaggcagcc atggacttct tcatcacgga 2040 tggcaaggtg gcagcccgca ccgtgcgggc gtccgtcgcc cggcctgccc cggccagggt 2100 tgccgcccgg cccgcgccca agcgcctgcc tgcggcccgg cgtgccggca cgactggcgc 2160 gactggcgcg actggggtgc acctggactt gtccaggggc gaagtggagg acgatgatct 2220 cggcttcgaa cgcttcggcg ccgatacata acccgccgga ggacaacagt atgacggcca 2280 gcctttcgga aggggttatg cggctgctga ccctcaccct ggacaacgtc tattttgccc 2340 tggacattca ttgcgtgcgc gagattctgg acatgacgga catcaccagc atcccccata 2400 cgccggaata catgcgcggc gtggtgaatg tgcgcggcag cgccgtgccc gtggtggatt 2460 tgcggctgaa gtttggcctg cctgcagcag agcggacgct gaacacccgc atcgtcatcc 2520 tggagattcc ccggggggag ggcgtggcgg ccatcggcgc catcgcggat tcggtccggg 2580 aggtgctgga ggtggaaacc gccagaatcg acccgccccc gcgcatgggc acgggcattc 2640 gggcggactt catccggggc atctgccgcc aggacgaacg cttcctgctc atcctggacg 2700 ccgccaaggt cttcaccacg gatgaagtcc tgtccctgga cgagcttggc gcgcagcctg 2760 gcccggtggt ggcttgaggg gggtcgaaga attcttccag tgtatgcagg catcagaaag 2820 tcgattccgc gggggcggaa aaagtgatca aaaaaatctc gccgcccctt gcgaaaacca 2880 cgggcctcct gcatgatggg ggagtctttt ttccgagcaa caccttgtca caaatgaccc 2940 tggaggccgc atccatgaaa atgtgcgaca tgtttcaaac tgccgactgg aaaaccgaaa 3000 agcacgtgcc cgccatcgag tgcgacgatg ccgtggcggc agacgccttc ttccccgtca 3060 ccgtgagcct gggcaaggaa attgcccacc ccaacaccac ggagcaccac atccgctgga 3120 tccgttgcta cttcaagccc gagggcgaca agttcagcta tgaggtgggt tccttcgagt 3180 tcaccgccca cggcgaatgc gccaagggcc ccaacgaagg gccggtgtac accaaccaca 3240 ccgtgacgtt ccagctgaag atcaagaccc ccggcgtcct ggtggcttcg tctttctgca 3300 atattcacgg gttgtgggaa tcttccaagg ccgtggccct caagtaatcg ctgcatgctg 3360 ccgatcatac aaagggagac ctcgcaaggg gcctcccttt ttttgtgggc gggcaaactg 3420 gaaatccatt gtccgcagtg gcgtggttga tattatgcgc gccacacatg ccgtcgggcg 3480 atttagggag atttccccgg gggggaaggt atcatttccg gggatgtgct gccatcgaga 3540 tggaggggtt gcgtcaaatt tgtgaatcat ggggagacgg ggcggaatgg gttttgaaca 3600 // |
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