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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AF093829; SV 1; linear; genomic DNA; STD; PRO; 1124 BP.
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AC   AF093829;
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DT   13-MAY-1999 (Rel. 59, Created)
DT   13-MAY-1999 (Rel. 59, Last updated, Version 1)
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DE   Helicobacter pylori strain UA1182 alpha-1,2-fucosyltransferase gene,
DE   alternative products, complete cds.
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KW   .
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OS   Helicobacter pylori
OC   Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
OC   Helicobacteraceae; Helicobacter.
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RN   [1]
RP   1-1124
RX   DOI; 10.1046/j.1365-2958.1999.01268.x
RX   PUBMED; 10096092.
RA   Wang G., Rasko D.A., Sherburne R., Taylor D.E.;
RT   "Molecular genetic basis for the variable expression of Lewis Y antigen in
RT   Helicobacter pylori: analysis of the alpha (1,2) fucosyltransferase gene";
RL   Mol. Microbiol. 31(4):1265-1274(1999).
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RN   [2]
RP   1-1124
RA   Wang G., Taylor D.E.;
RT   ;
RL   Submitted (24-SEP-1998) to the EMBL/GenBank/DDBJ databases.
RL   Medical Microbiology and Immunology, University of Alberta, 1-51 Medical
RL   Science Building, Edmonton, AB T6G 2H7, Canada
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DR   StrainInfo; 582405; UA 1182.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1124
FT                   /organism="Helicobacter pylori"
FT                   /strain="UA1182"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:210"
FT   CDS             join(141..573,573..1042)
FT                   /codon_start=1
FT                   /transl_table=11
FT                   /product="alpha-1,2-fucosyltransferase long form"
FT                   /note="ribosomal slippage"
FT                   /db_xref="GOA:Q9X436"
FT                   /db_xref="InterPro:IPR002516"
FT                   /db_xref="UniProtKB/TrEMBL:Q9X436"
FT                   /protein_id="AAD29865.1"
FT                   /translation="MAFKVVRICGGLGNQMFQYAFAKSLQKHSNTPVLLDITSFDWSNR
FT                   KMQLELFPIDLPYASAKEIAIAKMQHLPKLVRDALKYIGFDRVSQEIVFEYEPKLLKPS
FT                   RLTYFYGYFQDPRYFDAISPLIKQTFTLPPPPKIIRIIIKKEEEYHRKLALILAAKNSV
FT                   FVHIRRGDYVGIGCQLGIDYQKKALEYMAKRVPNMELFVFCEDLTFTQNLDLGYPFMDM
FT                   TTRDKDEEAYWDMLLMQSCQHGIIANSTYSWWAAYLIENPEKIIIGPKHWLFGHENILC
FT                   KEWVKIESHFEVKSQKYNA"
FT   CDS             141..605
FT                   /codon_start=1
FT                   /transl_table=11
FT                   /product="alpha-1,2-fucosyltransferase short form"
FT                   /note="nonfunctional"
FT                   /db_xref="GOA:Q9X437"
FT                   /db_xref="UniProtKB/TrEMBL:Q9X437"
FT                   /protein_id="AAD29864.1"
FT                   /translation="MAFKVVRICGGLGNQMFQYAFAKSLQKHSNTPVLLDITSFDWSNR
FT                   KMQLELFPIDLPYASAKEIAIAKMQHLPKLVRDALKYIGFDRVSQEIVFEYEPKLLKPS
FT                   RLTYFYGYFQDPRYFDAISPLIKQTFTLPPPPKIIRIIIKKRKNTTANLL"
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SQ   Sequence 1124 BP; 360 A; 203 C; 232 G; 329 T; 0 other;
     gaacactcac acgcgtcttt ttcaaataaa aaattcaaat gatttaaagc gatgcttgcc        60
     ccgcttttta ggcttttatt gaaaaagggc tttaaaatga gctaaaatga gcgttttatt       120
     tgaaaatata aagggattga atggctttta aggtggtgcg aatttgtgga gggcttggga       180
     atcaaatgtt tcaatacgct ttcgctaaaa gtttgcaaaa acactctaac acgcctgtgc       240
     tattagatat tacttctttt gattggagta ataggaaaat gcaattagaa cttttcccta       300
     ttgatttgcc ctatgcgagc gcgaaagaaa tcgctatagc taaaatgcaa cacctcccca       360
     agctagtaag agatgcgctc aaatacatag gatttgatag ggtgagtcaa gaaatcgttt       420
     ttgaatacga gcctaaatta ctaaagccaa gccgcttgac ttatttttat ggttacttcc       480
     aagatccacg atattttgat gctatatccc ctttaatcaa gcaaaccttc accctacccc       540
     cccccccgaa aataataaga ataataataa aaaagaggaa gaataccacc gcaaacttgc       600
     tttgatttta gccgctaaaa acagcgtgtt tgtgcatata agaagagggg attatgtggg       660
     gattggctgt cagcttggta ttgattatca aaaaaaggcg cttgagtata tggcaaagcg       720
     cgtgccaaac atggagcttt ttgtgttttg cgaagactta acattcacgc aaaatcttga       780
     tcttggctac ccttttatgg acatgaccac tagggataaa gacgaagagg cgtattggga       840
     catgctgctc atgcaatcgt gtcagcatgg cattatcgct aacagcactt atagttggtg       900
     ggcggcctat ttgatagaaa atccagaaaa aatcatcatt ggccccaaac actggctttt       960
     tgggcatgaa aatatccttt gtaaggaatg ggtgaaaata gaatcccatt ttgaggtgaa      1020
     atcccaaaag tataacgctt aaagcggctt aaaaaaggag ctttactaga ggtttaaatc      1080
     tttgatttta gatcggattt ctttatagcg agcgtctaat tcta                       1124
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