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EBI DbfetchID AF072888; SV 1; linear; genomic DNA; STD; PRO; 3506 BP. XX AC AF072888; XX DT 31-JUL-1998 (Rel. 56, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Sinorhizobium fredii plasmid pSfHH103d nodulation protein NoeK (noeK) gene, DE partial cds; NifW (nifW-like), nodulation protein NodZ (nodZ), and DE nodulation protein NoeL (noeL) genes, complete cds; and nodulation protein DE NolK (nolK) gene, partial cds. XX KW . XX OS Sinorhizobium fredii OC Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; OC Sinorhizobium/Ensifer group; Sinorhizobium. OG Plasmid pSfHH103d XX RN [1] RP 1-3506 RX DOI; 10.1094/MPMI.1999.12.3.207 RX PUBMED; 10065558. RA Lamrabet Y., Bellogin R.A., Cubo T., Espuny R., Gil A., Krishnan H.B., RA Megias M., Ollero F.J., Pueppke S.G., Ruiz-Sainz J.E., Spaink H.P., RA Tejero-Mateo P., Thomas-Oates J., Vinardell J.M.; RT "Mutation in GDP-fucose synthesis genes of Sinorhizobium fredii alters Nod RT factors and significantly decreases competitiveness to nodulate soybeans"; RL Mol. Plant Microbe Interact. 12(3):207-217(1999). XX RN [2] RP 1-3506 RA Lamrabet Y., Ollero F.J.; RT ; RL Submitted (18-JUN-1998) to the EMBL/GenBank/DDBJ databases. RL Microbiologia, Univ. Sevilla, Av. Reina Mercedes, 6, Sevilla 41012, Spain XX FH Key Location/Qualifiers FH FT source 1..3506 FT /organism="Sinorhizobium fredii" FT /plasmid="pSfHH103d" FT /strain="HH103" FT /mol_type="genomic DNA" FT /db_xref="taxon:380" FT CDS <1..597 FT /codon_start=1 FT /transl_table=11 FT /gene="noeK" FT /product="nodulation protein NoeK" FT /function="putative phosphomannomutase" FT /db_xref="GOA:O85710" FT /db_xref="InterPro:IPR005843" FT /db_xref="UniProtKB/TrEMBL:O85710" FT /protein_id="AAC27747.1" FT /translation="KLIATPITSNSGIEAASGVEVVRTRVGSPYVIAAMTEAVARGKQR FT VMGFEANGGVMLGSNFSFGGASLPALPTRDCVLPIIAALHMAVEAKTPLSGIVAMHRLP FT VALSGRIENYPFDRSDALVAFLKASKANVSHLFSRIGRVTGTDDVDGLRLTFEGGRILH FT IRPSGNAPELRCYVEADDPDAAEHLLAQGLAVLNS" FT CDS 653..721 FT /codon_start=1 FT /transl_table=11 FT /gene="nifW-like" FT /product="NifW" FT /note="similar to Klebsiella pneumoniae NifW" FT /db_xref="UniProtKB/TrEMBL:O85711" FT /protein_id="AAC27748.1" FT /translation="MSELFYAVSAVQELASALLFLV" FT CDS 912..1880 FT /codon_start=1 FT /transl_table=11 FT /gene="nodZ" FT /product="nodulation protein NodZ" FT /function="putative fucosyltransferase" FT /db_xref="GOA:O85712" FT /db_xref="InterPro:IPR008716" FT /db_xref="UniProtKB/TrEMBL:O85712" FT /protein_id="AAC27749.1" FT /translation="MYNRYVLSRRRTGFGDCLWSLAAAWRYAQRTARTLAVDWRGSCYL FT DQPFTNAFPVFFEPIKDIAGVPFICDNQINEFSFPGPFFPNWWNKPAIECVYRPDAQVF FT RERDELDELFQAQDDVEANTVVCDACLMWRCDEEAERQIFCSVKPRAEIQARIDAIYQE FT HFYGYSAIGVHVRHGNGEDVMDHAPYWADPDLAVHQVCTAINAAKALPHPKPVRVILCT FT DSARVLDQVSSRFPDLLTIPKSFRADQSGPLHSPDLGVEGGISALVEMYLLGLCDTVIR FT FPPTSAFTRYARLSVPRVIEFDLNDPSRLVVIERSSTNTAS" FT CDS 2125..3180 FT /codon_start=1 FT /transl_table=11 FT /gene="noeL" FT /product="nodulation protein NoeL" FT /function="putative GDP-D-mannose-4,6-dehydratase" FT /db_xref="GOA:O85713" FT /db_xref="HSSP:1DB3" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/Swiss-Prot:O85713" FT /protein_id="AAC27750.1" FT /translation="MTDRKVALISGVTGQDGAYLAELLLDEGYIVHGIKRRSSSFNTQR FT IEHIYQERHDPEARFFLHYGDMTDSTNLLRIVQQTQPHEIYNLAAQSHVQVSFETPEYT FT ANADAIGTLRMLEAIRILGLIHRTRFYQASTSELYGLAQEIPQNEKTPFYPRSPYAAAK FT LYAYWIVVNYREAYGMHASNGILFNHESPLRGETFVTRKITRAAAAISLGKQEVLYLGN FT LDAQRDWGHAREYVRGMWMMCQQDRPGDYVLATGVTTSVRTFVEWAFEETGMTIEWVGE FT GIEERGIDAATGKCVVAVDPRYFRPTEVDLLLGDATKARQVLGWRHETSVRDLACEMVR FT EDLSYLRGTRQ" FT CDS 3189..>3506 FT /codon_start=1 FT /transl_table=11 FT /gene="nolK" FT /product="nodulation protein NolK" FT /function="putative NAD-dependent nucleotide sugar FT epimerase/dehydrogenase" FT /db_xref="GOA:O85714" FT /db_xref="HSSP:1E6U" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:O85714" FT /protein_id="AAC27751.1" FT /translation="MPMYLLDGKRIWVAGHKGMVGSAIIRSLASEDCEVIVADRQKLDL FT TRQEEVEKFLSKEKPHAVIMAAAKVGGILANDTMPADFIYQNLIMEANVIEASFRSGVE FT KL" XX SQ Sequence 3506 BP; 798 A; 903 C; 979 G; 826 T; 0 other; aagcttattg ctacgccaat aaccagcaac tccgggatcg aggcggcgag tggcgtcgag 60 gtggtgcgta cccgcgttgg ctcaccttac gtcattgcag ccatgactga ggcggttgcg 120 cgtggcaagc agcgggtgat gggcttcgag gccaacggtg gcgtcatgct aggttcgaac 180 ttctcgttcg gaggcgcgtc gcttcccgcc ttgccgaccc gggactgcgt ccttcccatc 240 attgcagcgc tccacatggc agtagaggcc aaaactcccc tctcggggat cgtcgcgatg 300 catcgtttgc cagtcgcttt gtccggccgg atcgagaact atccattcga taggagcgac 360 gccctagtgg cattcttgaa agcgtcaaaa gctaatgttt cccatttatt cagccggatc 420 ggtcgcgtga cgggcacgga cgacgtggat ggcctgcgcc tgacatttga aggcggccgt 480 atcctgcaca tccgcccttc aggaaacgcg cctgaactgc gttgctacgt cgaggcagac 540 gacccagatg ctgccgaaca cttgctggct cagggactgg cggtccttaa cagttgaatg 600 ggtgtaagtt aggctttgct gatatgcaga tctgttaccg ctagcgtcgc cgatgagcga 660 gctgttctat gctgtgtcgg cagtccagga attggcatca gctcttctct tcctggtgtg 720 aaccgatggt tcgccaccta acgtgaagat aagccctgaa agacacgtcc cctttatatc 780 caatatgtgg atggttgcca ttcaaaatat gaattttact gatgttgccg aactccatta 840 ggaagctctg aattgatcgg aaatccgtag aagacactaa gtcagagcgg cggcactaag 900 gacgggcagc attgtacaat cgatatgtcc tctctcggag acgtactggt ttcggtgact 960 gtctgtggtc gctggcggcc gcttggcgct acgcccaacg gacggcgcga acgttagccg 1020 ttgactggcg cgggtcctgc taccttgatc agcccttcac aaacgccttt ccggtgtttt 1080 ttgaaccaat caaggatatc gcaggtgtcc cttttatttg cgataaccag atcaacgagt 1140 tttccttccc aggaccattc ttcccaaatt ggtggaataa acctgcgatt gaatgtgttt 1200 accgcccaga tgctcaggtt tttcgagagc gagacgaact cgatgaactt ttccaggccc 1260 aagatgatgt cgaggccaac acggtagtgt gtgatgcgtg tttgatgtgg cgctgcgacg 1320 aggaggcaga gcggcagatt ttctgcagtg tcaagcctcg ggctgaaatt caggctcgca 1380 tagacgctat ctatcaggag cacttctatg ggtacagtgc gatcggggtt catgttcggc 1440 atggtaacgg cgaagacgtt atggaccatg caccctactg ggccgatccg gaccttgccg 1500 tgcatcaagt gtgcactgcc attaatgctg ccaaagcgtt gccccacccg aagcctgtgc 1560 gggtgatttt gtgcaccgat agcgcgcggg tattggacca ggtgtcgagt aggttccccg 1620 atcttctcac gatcccgaaa agtttccgag cggatcagtc tggcccatta cacagcccag 1680 atctcggggt tgagggcgga atttccgccc tcgtcgagat gtatcttctt gggctttgcg 1740 acaccgtcat tcggtttcct ccgacaagcg cctttacacg ttacgcacgc ctttctgtcc 1800 caagggttat tgagtttgat ctgaacgatc ctagtcgcct ggtcgtgatc gaaagatctt 1860 caacaaatac cgcctcttga atgaaaatcg tcacctcaat tctaggcgtg gagaagagca 1920 gtcatggaga aacttgggcg cgctccaagg gacacgagcg cctcatgccc agttgtcccg 1980 gcccgcacgt ctccggcaat actgctttga aaaccgcaat gcctccatgg gcccgctctg 2040 tcgccgaagc acgacgattt ccttcacacc agccgcccta gcgcacgccc tctcccgcag 2100 gaatatcact ggagattcga caaagtgaca gaccggaaag tagctttaat atctggtgta 2160 acgggtcagg atggggctta tcttgctgaa ctgctgttgg acgaaggcta tattgttcac 2220 ggcataaagc gtcgttcgtc atcattcaac actcaacgga tagagcacat ttatcaagaa 2280 cgtcacgatc ctgaagcgag attttttctc cactatgggg atatgacgga ttcgaccaat 2340 ttgctgcgca ttgttcagca aacccagccg catgagatct acaaccttgc agcgcaaagc 2400 catgttcagg taagcttcga aacccccgag tacactgcaa acgccgatgc aattggtaca 2460 ttgcgcatgc tggaagctat tcggattctt gggctgatcc atcggactcg cttttatcag 2520 gcatcgactt cagagctata tgggctggct caagagatcc cccaaaacga aaagacgcca 2580 ttctacccgc gttcacccta cgcggccgca aagctgtacg cgtactggat tgtcgtaaat 2640 tatagagagg cttacggcat gcatgcctcc aacggtattc ttttcaacca cgaaagtccg 2700 cttcgtgggg agacgttcgt gactcggaag atcacccggg ctgcggcggc aatcagtcta 2760 ggtaaacaag aggtccttta tcttggaaat ctagatgctc aacgtgactg gggacatgcc 2820 cgtgagtatg tgcggggcat gtggatgatg tgtcagcagg atagaccagg cgactatgtc 2880 ctggctaccg gggtgacaac atcggttcgc acgttcgtcg aatgggcctt cgaggaaacc 2940 ggaatgacga ttgaatgggt gggagaaggc attgaagaaa ggggcataga cgccgcgaca 3000 ggcaaatgcg tcgttgcggt ggatccgcgc tatttcaggc ccaccgaagt agatttactt 3060 ttaggcgatg ccaccaaggc ccgccaggtt ttgggctgga ggcacgagac aagtgtgaga 3120 gatcttgctt gcgaaatggt aagggaagat ctctcttatt tgaggggcac ccgacagtaa 3180 gaggcgagat gccgatgtat ttgctagacg gaaagcgtat ttgggtcgca ggacacaaag 3240 gtatggtcgg cagcgccata attcgatcgc ttgcctccga ggattgcgaa gtcatcgttg 3300 cagataggca aaagctggat ctgacgcggc aagaggaagt tgagaaattt ctatcaaagg 3360 aaaagccgca tgcggtcata atggcggcag cgaaggtggg tgggatcctg gcaaatgata 3420 ctatgcccgc tgacttcatc tatcaaaacc ttatcatgga ggctaatgtc attgaggcct 3480 ccttccgcag tggcgttgaa aagctt 3506 // |
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