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EBI DbfetchID AF047761; SV 1; linear; genomic DNA; STD; PRO; 4128 BP. XX AC AF047761; XX DT 03-MAR-1998 (Rel. 54, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 2) XX DE Clostridium thermocellum xylanase V (xynV) and xylanase U (xynU) genes, DE complete cds. XX KW . XX OS Clostridium thermocellum OC Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; OC Clostridium. XX RN [1] RP 1-4128 RA Fernandes A.C., Fontes C.M.G.A., Clarke J.H., Hazlewood G.P., Gilbert H.J., RA Fernandes T.H., Ferreira L.M.A.; RT ; RL Submitted (12-FEB-1998) to the EMBL/GenBank/DDBJ databases. RL Faculdade de Medicina Veterinaria, Universidade Tecnica de Lisboa, Rua RL Gomes Freire, Lisboa 1199 Lisboa Codex, Portugal XX FH Key Location/Qualifiers FH FT source 1..4128 FT /organism="Clostridium thermocellum" FT /mol_type="genomic DNA" FT /db_xref="taxon:1515" FT CDS 119..1492 FT /codon_start=1 FT /transl_table=11 FT /gene="xynV" FT /product="xylanase V" FT /note="XYLV" FT /db_xref="GOA:O52779" FT /db_xref="HSSP:1GMM" FT /db_xref="InterPro:IPR018208" FT /db_xref="UniProtKB/TrEMBL:O52779" FT /protein_id="AAC04578.1" FT /translation="MKQKLLVTFLILITFTVSLTLFPVNVRADVVITSNQTGTHGGYNF FT EYWKDTGNGTMVLKDGGAFSCEWSNINNILFRKGFKYDETKTHDQLGYITVTYSCNYQP FT NGNSYLGVYGWTSNPLVEYYIIESWGTWRPPGATPKGTITVDGGTYEIYETTRVNQPSI FT KGTATFQQYWSVRTSKRTSGTISVTEHFKAWERLGMKMGKMYEVALVVEGYQSSGKADV FT TSMTITVGNAPSTSSPPGPTPEPTPRSAFSKIEAEEYNSLKSSTIQTIGTSDGGSGIGY FT IESGDYLVFNKINFGNGANSFKARVASGADTPTNIQLRLGSPTGTLIGTLTVASTGGWN FT NYEEKSCSITNTTGQHDLYLVFSGPVNIDYFIFDSKGVNPTPTPTSPPQQDQVLGDLNG FT DKQVNSTDYTALKRHLLNITRLSGTALANADVNRDGKVDSTDLMMLHRYLLRIISKLG" FT CDS 1519..3570 FT /codon_start=1 FT /transl_table=11 FT /gene="xynU" FT /product="xylanase U" FT /note="XYLU" FT /db_xref="GOA:O52780" FT /db_xref="InterPro:IPR018208" FT /db_xref="PDB:1GMM" FT /db_xref="UniProtKB/TrEMBL:O52780" FT /protein_id="AAC04579.1" FT /translation="MRQKLLVTFLILITFTVSLTLFPVNVRADVVITSNQTGTHGGYNF FT EYWKDTGNGTMVLKDGGAFSCEWSNINNILFRKGFKYDETKRHDQLGYITVTYSCNYQP FT NGNSYLGVYGWTSNPLVEYYIIESWGTWRPPGATPKGTITVDGGTYEIYETTRVNQPSI FT KGTATFQQYWSVRTSKRTSGTISVTEHFKAWERLGMKMGKMYEVALVVEGYQSSGKADV FT TSMTITVGNAPSTSSPPGPTPEPTPRSAFSKIESEEYNSLKSSTIQTIGTSDGGSGIGY FT IESGDYLVFNKINFGNGANSFKARVASGADTPTNIQLRLGSPTGTLIGTLTVASTGGWN FT NYEEKSCSITNTTGQHDLYLVFSGPVNIDYFIFDSNGVNPTPTSQPQQGQVLGDLNGDK FT QVNSTDYTALKRHLLNITRLSGTALANADLNGDGKVDSTDLMILHRYLLGIISSFPRSN FT PQPSSNPQPSSNPQPTINPNAKLVALTFDDGPDNVLTARVLDKLDKYNVKATFMVVGQR FT VNDSTAAIIRRMVNSGHEIGNHSWSYSGMANMSPDQIRKSIADTNAVIQKYAGTTPKFF FT RAPNLETSPTLFNNVDLVFVGGLTANDWIPSTTAEQRAGAVINGVRDGTIILLHDVQPE FT PHPTPEALDIIIPTLKSRGYEFVTLTELFTLKGVPIDPSVKRMYNSVP" XX SQ Sequence 4128 BP; 1323 A; 945 C; 855 G; 1005 T; 0 other; tccataacac tgtcaattta caggcgaagg gaaagtatat attttttcag aattgcttaa 60 aaaaattatt aatataaatt tatattttta taaaaaaatc taaaaaaggg ggagaaaaat 120 gaaacaaaaa ttactggtaa ctttcctgat tttaattact tttaccgttt cgctgacttt 180 gtttccggta aatgtacgcg ctgatgtggt aattacgtca aaccagacgg gtactcacgg 240 cgggtacaac tttgagtact ggaaagacac cggaaacgga accatggtcc tcaaagacgg 300 tggtgcgttc agctgcgaat ggagcaatat caacaatatt cttttccgta aaggtttcaa 360 atacgatgaa acaaagacac atgatcaact tggatacata acggtaactt attcctgcaa 420 ctatcagcca aacggaaact cttatctggg agtctacgga tggaccagca atccgcttgt 480 agagtattac atcatcgaga gctggggaac ctggagacca ccgggagcaa caccaaaggg 540 cactattacc gttgacggtg gtacatacga gatatacgag accaccagag ttaaccagcc 600 ttccatcaaa ggtacagcta ctttccagca atactggagt gtacgtacat caaaacgtac 660 aagcggaacc atatccgtaa ccgaacactt taaagcctgg gaacgtctgg gtatgaaaat 720 gggaaaaatg tatgaggttg ctttggttgt agaaggatac cagagcagcg gaaaagccga 780 cgtaaccagc atgacaatta ctgttggcaa cgcaccgtca acatcatcac caccgggtcc 840 gacacctgaa ccgactccaa gaagtgcttt ttcaaaaatc gaagctgagg agtacaactc 900 cctcaagtca tcaaccattc agaccatagg cacttccgac ggaggaagcg gtataggtta 960 tattgaaagc ggtgactatc tggtatttaa caaaataaac tttggaaacg gtgcaaactc 1020 tttcaaggca agggttgcat ccggtgcgga cacacccacc aatatccagt taagactcgg 1080 aagcccgacc ggtactctta taggaactct tacggtggct tccacaggcg gttggaacaa 1140 ttacgaggaa aaatcctgca gcataaccaa cactacagga cagcacgact tatatctggt 1200 attctcaggt cctgttaaca ttgactactt catattcgac tcgaaaggtg taaatcctac 1260 acctacacct acttctccgc ctcaacaaga ccaggttttg ggtgacttga acggagacaa 1320 acaagtaaat tcaacagact atacagcact gaagagacat ttgctcaata taaccagact 1380 ttcaggaacc gctcttgcca atgccgatgt aaaccgcgac ggcaaagttg attccactga 1440 tcttatgatg ttgcacagat accttcttcg tataatctcc aaacttggat gataatcggc 1500 tgaagaaagg agagcaaaat gagacaaaaa ttactggtaa ctttcctgat tttaattact 1560 tttaccgttt cactgacttt gtttccggta aatgtacgcg ctgatgtagt aattacgtca 1620 aaccagacgg gtactcatgg cgggtacaac tttgagtact ggaaagacac cggaaacgga 1680 accatggtcc tcaaagacgg tggtgcgttc agctgcgaat ggagcaatat caacaatatt 1740 cttttccgta aaggtttcaa atacgatgaa acaaagagac atgatcaact tggatacata 1800 acggtaactt attcctgcaa ctatcagcca aacggaaact cttatctggg agtctacgga 1860 tggaccagca atccgcttgt agagtattac atcatcgaga gctggggaac ctggagacca 1920 ccgggagcaa caccaaaggg cactattacc gttgacggtg gtacatacga gatatacgag 1980 accaccagag ttaaccagcc ttccatcaaa ggtacagcta ctttccagca atactggagt 2040 gtacgtacat caaaacgtac aagcggaacc atatccgtaa ccgaacactt taaagcctgg 2100 gaacgtctgg gtatgaaaat gggaaaaatg tatgaggttg ctttggttgt agaaggatac 2160 cagagcagcg gaaaagccga cgtaaccagc atgacaatta ctgttggcaa cgcaccgtca 2220 acatcatcac caccgggtcc gacacctgaa ccgactccaa gaagtgcttt ttcaaaaatc 2280 gaatctgagg agtacaactc cctcaagtca tcaaccattc agaccatagg cacttccgac 2340 ggaggaagcg gtataggtta tattgaaagc ggtgactatc tggtatttaa caaaataaac 2400 tttggaaacg gtgcaaactc tttcaaggca agggttgcat ccggtgcgga cacacccacc 2460 aatatccagt taagactcgg aagcccgacc ggtactctta taggaactct tacggtggct 2520 tccacaggtg gttggaacaa ttacgaggaa aaatcctgca gcataaccaa cactacagga 2580 cagcacgact tatatctggt attctcaggt cctgttaaca ttgactactt catattcgac 2640 tcgaatggcg taaatcctac acccacctct cagcctcaac aaggccaggt tttgggtgac 2700 ttgaacggag acaaacaagt aaattcaaca gactacacag cactgaagag acatttgctc 2760 aatataacca gactttcagg aactgctctt gccaacgccg atttaaacgg tgacggcaaa 2820 gttgattcca ctgaccttat gattctacac agatatcttc tcggtataat ttcatctttt 2880 ccacgcagca atccacaacc aagcagtaac cctcaaccaa gcagcaatcc gcagccaacg 2940 attaatccaa atgcgaaact ggtggctctt acctttgacg acggtccgga caacgtactt 3000 acggcacggg ttctcgacaa gcttgataaa tataacgtta aggctacatt catggtagta 3060 ggtcagagag tcaatgattc gacggctgcc atcatcagaa ggatggttaa ttcaggccat 3120 gaaataggaa accactcatg gagttattca ggcatggcca atatgagtcc ggatcagata 3180 aggaaatcca ttgccgatac aaatgcagtt attcaaaaat atgctggaac aacacccaag 3240 ttcttccgtg cgccgaacct cgaaacaagc ccaacattat tcaacaatgt tgacttggtg 3300 tttgtcggcg gcttaacggc aaatgactgg attccatcca caaccgccga acagagggct 3360 ggcgcagtta taaacggtgt cagagacggt acaataattc ttttgcatga tgttcaacct 3420 gagccacacc cgacaccgga agctctggat ataatcatcc ctacacttaa gagccggggc 3480 tatgaatttg tgaccttgac tgagttgttc acgttaaagg gtgtgccaat tgacccatca 3540 gtcaaaagaa tgtataactc tgtaccgtaa gacaaatccg aatatcaaat cagtacaaca 3600 aagggggata aaattactcc cccttttttt gctttattgc cccgttattc tctcttttta 3660 tatattttta tcgatattgc gatggatatt aaatttacaa ccaacgtaaa tattacagtt 3720 gcaacgaatg ccgtaacaac gtttacatat gatgccgaaa ggatactaaa aatctgtcac 3780 caagcaccat taccccacat gttacagcta caatcagggc aaaaaaggca aggcgtcctt 3840 tttctactcc aaacttgaaa caataacaag gggaagattt atcgcctgaa tgaatagttg 3900 caatacaggc aataagtatt acggaaagga cttgttccat ctcgaaaggt gtattttttt 3960 atcagactca tgacaatttg tactgctatc gaaaataaag ctacagtagc agcagctata 4020 tatccaagga catatttact tcccaccatg ctctcatccg aatatggcat catcaacgca 4080 agactgttcc actttgagcg ttcatcataa gccagagccg taatccgg 4128 // |
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