 |
|
EBI DbfetchID AF047025; SV 1; linear; genomic DNA; STD; PRO; 3604 BP. XX AC AF047025; XX DT 20-FEB-1998 (Rel. 54, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Pseudomonas aeruginosa ribosomal protein S4 (rpsD) gene, partial cds; DE DNA-directed RNA polymerase alpha chain (rpoA), ribosomal large subunit DE protein L17 (rplQ), and catalase isozyme A (katA) genes, complete cds; and DE bacterioferritin (bfr) gene, partial cds. XX KW . XX OS Pseudomonas aeruginosa OC Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; OC Pseudomonadaceae; Pseudomonas. XX RN [1] RP 1-3604 RX PUBMED; 10368148. RA Ma J.F., Ochsner U.A., Klotz M.G., Nanayakkara V.K., Howell M.L., RA Johnson Z., Posey J.E., Vasil M.L., Monaco J.J., Hassett D.J.; RT "Bacterioferritin A modulates catalase A (KatA) activity and resistance to RT hydrogen peroxide in Pseudomonas aeruginosa"; RL J. Bacteriol. 181(12):3730-3742(1999). XX RN [2] RP 1-3604 RA Ma J.-F., Howell M.L., Klotz M.G., Hassett D.J.; RT "Pseudomonas aeruginosa oxidative stress operon"; RL Unpublished. XX RN [3] RP 1-3604 RA Ma J.-F., Howell M.L., Klotz M.G., Hassett D.J.; RT ; RL Submitted (05-FEB-1998) to the EMBL/GenBank/DDBJ databases. RL Department of Molecular Genetics, University of Cincinnati, 231 Bethesda RL Avenue, Cincinnati, OH 45267-0524, USA XX FH Key Location/Qualifiers FH FT source 1..3604 FT /organism="Pseudomonas aeruginosa" FT /strain="FRD1" FT /mol_type="genomic DNA" FT /db_xref="taxon:287" FT CDS <1..58 FT /codon_start=2 FT /transl_table=11 FT /gene="rpsD" FT /product="ribosomal protein S4" FT /note="similar to Haemophilus influenzae ribosomal protein FT S4 encoded by Genbank Accession Number U32762" FT /db_xref="GOA:O52759" FT /db_xref="HSSP:1FJG" FT /db_xref="InterPro:IPR002942" FT /db_xref="UniProtKB/Swiss-Prot:O52759" FT /protein_id="AAC03115.1" FT /translation="NSSSVPINENLIVELYSK" FT CDS 81..1157 FT /codon_start=1 FT /transl_table=11 FT /gene="rpoA" FT /product="DNA-directed RNA polymerase alpha chain" FT /note="similar to Heamophilus influenza RpoA, Swissprot FT Accession Number P43737" FT /db_xref="GOA:O52760" FT /db_xref="HSSP:1LB2" FT /db_xref="InterPro:IPR011773" FT /db_xref="UniProtKB/Swiss-Prot:O52760" FT /protein_id="AAC03116.1" FT /translation="MQSSVNEFLTPRHIDVQVVSQTRAKITLEPLERGFGHTLGNALRR FT ILLSSMPGCAVVEAEIDGVLHEYSAIEGVQEDVIEILLNLKGLAIKLHGRDEVTLTLAK FT KGSGVVTAADIQLDHDVEIINGDHVIANLADNGALNMKLKVARGRGYEPADARQSDEDE FT SRSIGRLQLDASFSPVRRVSYVVENARVEQRTNLDKLVLDLETNGTLDPEEAIRRAATI FT LQQQLAAFVDLKGDSEPVVEEQEDEIDPILLRPVDDLELTVRSANCLKAENIYYIGDLI FT QRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLDNWPPASLTERRQGHCLIVVTTE FT RKVWKGIEPCAIVKVVVT" FT CDS 1127..1516 FT /codon_start=1 FT /transl_table=11 FT /gene="rplQ" FT /product="ribosomal large subunit protein L17" FT /note="similar to Haemophilus influenza ribosomal protein FT L17, Swissprot Accession Number P44355" FT /db_xref="GOA:O52761" FT /db_xref="HSSP:1GD8" FT /db_xref="InterPro:IPR000456" FT /db_xref="UniProtKB/Swiss-Prot:O52761" FT /protein_id="AAC03117.1" FT /translation="MRHRKSGRHLSRTSAHRKAMFQNMAVSLFEHELIKTTLPKAKELR FT RVAEPLITLAKEDSVANRRLAFDRTRSKAAVGKLFNDLGKRYANRPGGYLRILKCGFRA FT GDNAPMAYVELVDRPVGGEVVEAAE" FT CDS 1798..3246 FT /codon_start=1 FT /transl_table=11 FT /gene="katA" FT /product="catalase isozyme A" FT /note="KatA; similar to group III bacterial catalases; see FT Molec. Biol. Evol. 14:951-958 (1997)" FT /db_xref="GOA:O52762" FT /db_xref="HSSP:1M85" FT /db_xref="InterPro:IPR018028" FT /db_xref="UniProtKB/Swiss-Prot:O52762" FT /protein_id="AAC03118.1" FT /translation="MEEKTRLTTAAGAPVVDNQNVQTAGPRGPMLLQDVWFLEKLAHFD FT REVIPERRMHAKGSAAYGTFTVTHDITPYTRAKIFSQVGKKTDMFLRFSTVAGERGAAD FT AERDIRGFSMRFYTEQGNWDLVGNNTPVFYLRDPLKFPDLNHVVKRDPRTNLRNATFKW FT DFFSHLPESLHQLTIDFSDRGLPKSYRHIHGFGSHTFSFINANNERFWVKFHFKTQQGI FT ENLTNAEAAEVIAQDRESSQRDLYESIEKGDFPRWKMYVQIMPEKEAATYRYNPFDLTK FT VWPHGDYPLIEVGFFELNRNPDNYFAEVEQAAFTPANVVPGIGFSPDKMLQGRLFSYGD FT AHRYRLGVNHHQIPVNAARCPHQVYHRDGGMRVDGNNAHQRVTYEPNSFNQWQEQPDFS FT EPPLSLEGAADHWNHRVDDDYYSQPAALFHLFTDEQKQRLFANIAEDIRDVPEQIQRRQ FT IGLFLKVDPAYGKGVADALGLKLD" FT CDS 3377..>3604 FT /codon_start=1 FT /transl_table=11 FT /gene="bfr" FT /product="bacterioferritin" FT /note="Bfr; similar to Pseudomonas putida Bfr encoded by FT Genbank Accession Number U63512" FT /db_xref="GOA:O52763" FT /db_xref="HSSP:1BCF" FT /db_xref="InterPro:IPR009040" FT /db_xref="UniProtKB/TrEMBL:O52763" FT /protein_id="AAC03119.1" FT /translation="MQGHPEVIDYLNTLLTGELAARDQYFIHSRMYEDWGFSKLYERLN FT HEMEEETQHADALLRRILLLEGTPRMRPDDI" XX SQ Sequence 3604 BP; 770 A; 1141 C; 1018 G; 675 T; 0 other; gaattcgagc tcggtaccca tcaacgaaaa cctgattgtc gagctctact ccaagtaagg 60 gctagaaaat aggtgcatcc atgcagagtt cggtaaatga gttcctgacc ccccgccaca 120 tcgatgtgca ggtggtcagt caaacccgcg ccaagatcac gctcgagcct ctcgagcgtg 180 gttttggtca caccctgggc aacgcgctgc gtcgcatcct gttgtcctcc atgcctggct 240 gcgcagtggt cgaggccgag atcgacggcg tactccacga gtactcggcg atcgaaggtg 300 tgcaggaaga tgtaatcgag atcctgctga acctgaaagg tctggccatc aagctgcacg 360 gtcgtgatga agtgacgctg accctggcta agaagggctc gggtgttgtg actgctgccg 420 atattcagct ggatcacgat gttgagatca tcaacggtga ccacgttatc gccaacctgg 480 cagacaacgg cgcgctgaac atgaagctga aggtagctcg tggccgtggc tacgagcctg 540 ccgacgcacg tcagagcgat gaagacgaaa gccgcagcat cggccgtctg cagctcgacg 600 catcgttcag cccggtccgt cgtgtctcct acgtggtgga aaacgcccgt gtcgagcagc 660 gcaccaacct ggacaaactg gtcctggacc tggaaaccaa cggcaccctg gatcccgaag 720 aggctatccg tcgcgccgct accatcctgc aacagcagct ggcagcgttc gtggacctca 780 agggcgacag cgaacccgtc gttgaagagc aggaagacga gatcgatccg atcctcctgc 840 gcccggtcga tgacctggaa ctgaccgtac gttcggccaa ctgcctgaag gcggaaaaca 900 tctactacat cggtgacctg atccagcgca ccgaagtgga gctgttgaaa acgccgaacc 960 tgggcaagaa gtccctgacc gaaatcaagg acgttctggc ttcccgtggt ctgtccctcg 1020 gtatgcgcct cgataactgg ccgccggcaa gtcttacaga aagacgacaa ggccactgcc 1080 tgatcgtcgt aactaccgaa cgtaaagttt ggaaaggaat tgaaccatgc gccatcgtaa 1140 aagtggtcgt cacctgagcc gcaccagcgc gcaccgcaag gctatgttcc agaacatggc 1200 ggtgtcgctg ttcgaacacg aactgatcaa aaccaccctg cccaaggcca aggaactgcg 1260 tcgcgttgcc gagccgctga tcaccctggc caaggaagac agcgtcgcca accgtcgcct 1320 ggctttcgac cgtacccgtt cgaaagctgc cgttggcaag ctgttcaacg acctgggcaa 1380 gcgctacgcc aaccgtccgg gcggctacct gcgcatcctg aagtgcggtt tccgcgctgg 1440 cgacaacgcc cccatggcgt acgtcgagct ggttgatcgt cctgtcggcg gtgaagtcgt 1500 agaagctgcc gaataaggca tctgctgcac aagaaaccgg gcctaggccc ggttttttta 1560 ttacctgcct taaagttttt atctatcggc tcgctttctt taataaattg gattgcggga 1620 gggctgtcat tcatccttaa cctgctttta cgaaaagcta cgttcggata agcgagatca 1680 atgcaaaggg cgcttggttc agccgacagg ttgtcctccg ccaatccctg gtccacgctg 1740 atgatttccg tgtagccgct tcgcttcata gcacgttagc cgttgaggag agagtaaatg 1800 gaagagaaga cccgcctgac cactgccgct ggcgcaccgg tggtcgataa ccagaacgtg 1860 cagaccgccg gtccgcgtgg cccgatgttg ctgcaggacg tgtggttcct cgagaagctc 1920 gcccacttcg atcgcgaagt gatccccgag cgacgcatgc atgcgaaagg ctccgcggcc 1980 tacggtacct tcaccgtcac ccatgacatc accccctaca cccgggcgaa gatcttctcc 2040 caggttggca agaagaccga tatgttcctg cgcttctcca ccgtcgccgg tgagcgtggc 2100 gcggcggatg ccgagcgtga catccgcggc ttctccatgc gtttctacac cgagcagggc 2160 aactgggacc tggtcggcaa caacaccccg gtgttctacc tgcgcgaccc gctcaagttt 2220 cccgatctca accacgtggt gaagcgtgac ccgcgcacca acctgcgcaa tgcgaccttc 2280 aagtgggact ttttctctca cctccccgag tcgctgcatc agttgaccat tgacttcagc 2340 gaccgcggcc tgccgaagag ctatcggcac atccatggtt tcggcagcca taccttcagc 2400 ttcatcaatg cgaacaacga gcgcttctgg gtcaagttcc acttcaagac ccaacagggc 2460 atcgagaacc tgaccaacgc cgaggctgcc gaagtgatcg cccaggaccg cgagagttcg 2520 cagcgcgact tgtacgagag catcgagaaa ggcgacttcc cgcgctggaa gatgtacgtg 2580 cagatcatgc ccgagaagga agcggccacc tatcgctaca acccgttcga cctgaccaag 2640 gtctggcccc acggcgacta cccgttgatc gaagtgggct tcttcgagct gaaccgtaac 2700 ccggacaact acttcgccga ggtcgagcag gccgctttca cgccggccaa cgtggtgccc 2760 ggtatcggtt tctcgccgga caagatgctc cagggccgtc tgttctccta cggcgacgcc 2820 catcgctatc gcctgggcgt caaccaccac cagatcccgg tgaacgccgc gcgttgcccg 2880 caccaggtct accaccgcga cggcggcatg cgggtggacg gcaacaacgc ccatcagcgc 2940 gtcacctacg agccgaacag cttcaaccag tggcaggagc agcctgactt ctccgagccg 3000 ccgctgagcc tggagggtgc tgcggaccac tggaaccacc gggtggacga tgactactac 3060 agccagcccg ccgcgctgtt ccatctgttc accgacgagc agaagcagcg gctgttcgcc 3120 aacatcgccg aagacatccg cgatgtaccg gaacagatcc agcgtcgcca gatcggcctg 3180 ttcctcaagg tcgacccggc ctacggcaaa ggcgtcgccg acgccctcgg cctgaagctg 3240 gactgatggc ctgatgaggc ccccggcccc cttcctagga agggggcttt tttatctgca 3300 ttggcttgac ccggatcagg cggagccggg agcatatgcg gctagattcc tagttttctc 3360 cagggagagc cccccgatgc aaggccatcc ggaagtcatc gattacctca acacgctgct 3420 gaccggcgag ctggccgcgc gcgaccagta cttcatccac tcgcgcatgt acgaggactg 3480 gggcttcagc aagctctacg agcgcctcaa ccacgagatg gaggaggaga cccagcacgc 3540 cgacgccctg ctgcgccgta tcctcctgct cgaaggtacg ccgcgcatgc gtcccgacga 3600 tatc 3604 // |
|