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EBI DbfetchID AF040720; SV 1; linear; genomic DNA; STD; PRO; 2601 BP. XX AC AF040720; XX DT 17-JAN-1998 (Rel. 54, Created) DT 17-APR-2003 (Rel. 75, Last updated, Version 3) XX DE Selenomonas ruminantium xylosidase/arabinosidase (Xsa) gene, complete cds. XX KW . XX OS Selenomonas ruminantium OC Bacteria; Firmicutes; Clostridia; Clostridiales; Veillonellaceae; OC Selenomonas. XX RN [1] RP 1-2601 RX DOI; 10.1007/s002840010304 RX PUBMED; 11683366. RA Whitehead T.R., Cotta M.A.; RT "Identification of a broad-specificity xylosidase/arabinosidase important RT for xylooligosaccharide fermentation by the ruminal anaerobe Selenomonas RT ruminantium GA192"; RL Curr. Microbiol. 43(4):293-298(2001). XX RN [2] RP 1-2601 RA Cotta M.A., Whitehead T.R.; RT ; RL Submitted (31-DEC-1997) to the EMBL/GenBank/DDBJ databases. RL USDA/ARS, National Center for Agricultural Utilization Research, 1815 N. RL University St., Peoria, IL 61604, USA XX FH Key Location/Qualifiers FH FT source 1..2601 FT /organism="Selenomonas ruminantium" FT /strain="GA192" FT /mol_type="genomic DNA" FT /db_xref="taxon:971" FT CDS 110..1726 FT /codon_start=1 FT /transl_table=11 FT /gene="Xsa" FT /product="xylosidase/arabinosidase" FT /db_xref="GOA:O52575" FT /db_xref="InterPro:IPR013320" FT /db_xref="PDB:3C2U" FT /db_xref="UniProtKB/TrEMBL:O52575" FT /protein_id="AAB97967.1" FT /translation="MNIQNPVLKGFNPDPSIVRAGDDYYIATSTFEWFPGVQIHHSKDL FT VHWHLVAHPLSTTEFLDMKGNPDSGGIWAPDLSYADGKFWLIYTDVKVVDGMWKDCHNY FT LTTAEDIKGPWSKPILLNGAGFDASLFHDPSGKKYLVNMYWDQRVYHHNFYGIALQEYS FT VAEEKLIGKPEIIYKGTDIAYTEGPHLYYINDMYYLMTAEGGTTYQHSETIARSKTIHG FT PYEIQPDYPLLSAWKEVHNPLQKCGHASLVETQNGQWYLAHLTGRPLPAPAGFPSRERE FT QHAFCPLGRETAIQKIEWQDGWPVVVGGQQGSLEVEAPDLPQQEWAPTYEERDDFDKDT FT LNINFQTLRIPFSEHLGSLTARPGFLRLYGRESLQSKFTQAHIARRWQSFNFDAGTSVE FT FSPNSFQQMAGLTCYYNTENWSSIHVTWNEEKGRIIDLVTADNGTFSMPLAGAEIPIPD FT EVKTVHFKVSVRGRIYQYAYSFDGETFHTLPIELPSWKLSDDYVRGGGFFTGAFVGINA FT IDITGTALPADFDYFTYKELD" XX SQ Sequence 2601 BP; 704 A; 747 C; 590 G; 560 T; 0 other; gatcattacc gaactggaac aacgtcacca gcaggaaaag cattacacag atgacagtca 60 gctggctgcc agcaccttgt aaaaacgtgt ttaaattgga gacttcaaga tgaacattca 120 aaatcccgta ttaaaaggct ttaaccccga ccccagcatt gtccgggcag gcgatgacta 180 ctatattgcc acctccacct tcgagtggtt ccccggtgtg cagattcatc attccaaaga 240 tttagtacat tggcacctcg ttgcccatcc cctttccacc acggaatttc tggatatgaa 300 aggcaatccg gattccggcg gcatctgggc acctgacctt tcctatgccg atggcaagtt 360 ctggctcatt tacaccgatg taaaggtcgt agacggcatg tggaaggatt gtcataacta 420 cctgaccacc gccgaagaca taaaaggccc ctggtcaaaa ccgatactcc tgaacggtgc 480 tggctttgat gcctccctgt tccatgaccc cagcggcaaa aaatatctgg tcaatatgta 540 ctgggatcag cgcgtctacc atcataattt ctacggcatt gccctgcagg aatattccgt 600 agccgaagaa aaactcatcg gcaagccgga aatcatctat aagggtaccg atattgccta 660 taccgaaggt ccccaccttt actatatcaa cgatatgtat tacctcatga cagctgaagg 720 cggcacgacg tatcagcatt ctgagaccat cgcccgcagc aagactatcc acgggcccta 780 tgaaatacag ccggactatc ccctgctgtc ggcatggaag gaagtccata accccctgca 840 gaaatgcggc catgcatcat tagtcgaaac gcaaaacggc cagtggtact tagcccatct 900 gactggcaga cccctgcctg cccccgccgg cttccccagc cgcgaacgcg aacagcatgc 960 cttctgtccg ctgggcagag aaaccgccat ccaaaaaatc gaatggcagg acggctggcc 1020 cgtagtcgtt ggcggtcagc agggttcctt agaagtcgaa gcacctgacc tgccccagca 1080 ggaatgggca ccgacttacg aagaacgcga tgacttcgat aaggacacct taaacatcaa 1140 cttccagacc ctgcgtatcc ccttcagtga gcatttgggc agtctcaccg cccgtcccgg 1200 cttcctgcgc ctgtacggcc gcgaatccct gcagtccaaa tttacccagg cccatattgc 1260 ccgccgctgg cagtccttca atttcgatgc tggaaccagc gtggaatttt ctccgaactc 1320 cttccagcag atggccggtc ttacctgcta ctacaatacg gaaaactggt ccagcatcca 1380 tgtgacctgg aacgaagaaa aaggccgtat catcgatttg gtcaccgccg acaacggcac 1440 cttctccatg ccgcttgccg gagcagaaat ccccattccc gatgaagtaa agaccgtcca 1500 cttcaaggta tccgtgcgcg gcagaatcta ccaatacgct tattccttcg atggcgaaac 1560 cttccacacc ctgcccatag aactgcccag ctggaaactc tccgatgact atgtgcgcgg 1620 cggcggattc ttcactggtg ctttcgtcgg cataaacgcc attgatatta ccggcacagc 1680 gcttcccgct gactttgatt atttcactta caaggaactg gactgaattc acgttacttg 1740 ttaaaataat agataaaaga gctaactgga ggtacaggca tggttacgat gaaaagtatt 1800 gcggaaatat gcggtgtttc ccgaggcaca gtagaccgcg cattaaatgg ccgcggccgg 1860 gtaaactcag aaaccgctga caaaatccgt caaatcgcca aggaattagg ctataccccc 1920 aaccctgccg gcaaagcact ttcagcccga aaaaaaagac cagtcatcgg cattgtaatc 1980 ccctctgaga acaacccctt ctttgacgat gtactaaagg gcatggaaga agcagctgcc 2040 caatatcaaa tctatggtgt ccaaataaaa taccatacga tgaaaggtta tgacccggcc 2100 aaacagttag caaccctgca aaaaatcgaa gaccaggtac aggcgctcat catcaacccc 2160 attgatgacc cagctattgt cagccaaatc aatcgcatga ttgacaaagg cgtcttcgtg 2220 gtaaccgtca acaacgatat tgaaggtaca aagcgccatt gctatgtggg cagtgactac 2280 tacaacggcg gcataacatc ctgtgcactg atggaagcgc tcgtgggcaa aacagccaat 2340 ctggccatta tcctcggcag cctgaaactg cgcggtcatc gcctccgtct ggaaggtttc 2400 aaatcccgca tgcagcgatt gccggatttt cagctggcaa ccgtgctgga aaacaatgat 2460 gatgacattt acgcctacga aaaaaccaag gagcttttaa ccgctcatcc ggaaatcaat 2520 gccatcagca ttttggccgc cggtgtctac ggcacctgcc gtgccgtcat gcagttgccg 2580 gaagaaaaac ggcccttgat c 2601 // |
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