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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AF036925; SV 1; linear; genomic DNA; STD; PRO; 1272 BP.
XX
AC   AF036925;
XX
DT   13-JAN-1998 (Rel. 54, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 3)
XX
DE   Caldicellulosiruptor sp. Rt69B.1 family 11 xylanase (xynD) gene, complete
DE   cds.
XX
KW   .
XX
OS   Caldicellulosiruptor sp. Rt69B.1
OC   Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales;
OC   Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.
XX
RN   [1]
RP   1-1272
RX   DOI; 10.1007/s007920050105
RX   PUBMED; 10356996.
RA   Morris D.D., Gibbs M.D., Ford M., Thomas J., Bergquist P.L.;
RT   "Family 10 and 11 xylanase genes from Caldicellulosiruptor sp. strain
RT   Rt69B.1";
RL   Extremophiles 3(2):103-111(1999).
XX
RN   [2]
RP   1-1272
RA   Morris D.D., Gibbs M.D., Ford M., Thomas J., Bergquist P.L.;
RT   ;
RL   Submitted (05-DEC-1997) to the EMBL/GenBank/DDBJ databases.
RL   SBS, University of Auckland, 3A Symonds Street, Auckland, New Zealand
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1272
FT                   /organism="Caldicellulosiruptor sp. Rt69B.1"
FT                   /strain="Rt69B.1"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:70295"
FT   CDS             50..1135
FT                   /codon_start=1
FT                   /transl_table=11
FT                   /gene="xynD"
FT                   /product="family 11 xylanase"
FT                   /EC_number="3.2.1.8"
FT                   /note="XynD"
FT                   /db_xref="GOA:O52375"
FT                   /db_xref="HSSP:1F5J"
FT                   /db_xref="InterPro:IPR001137"
FT                   /db_xref="InterPro:IPR005084"
FT                   /db_xref="InterPro:IPR008979"
FT                   /db_xref="InterPro:IPR008985"
FT                   /db_xref="InterPro:IPR013319"
FT                   /db_xref="InterPro:IPR018208"
FT                   /db_xref="UniProtKB/TrEMBL:O52375"
FT                   /protein_id="AAB95327.1"
FT                   /translation="MCVVLANPFYAQAAMTFTSNATGTYDGYYYELWKDTGNTTMTVDT
FT                   GGRFSCQWSNINNALFRTGKKFSTAWNQLGTVKITYSATYNPNGNSYLCIYGWSRNPLV
FT                   EFYIVESWGSWRPPGATSLGTVTIDGATYDIYKTTRVNQPSIEGTRTFDQYWSVRTSKR
FT                   TSGTVTVTDHFKAWAAKGLNLGTIDQITLCVEGYQSSGSANITQNTFTIGGSSSGSSNG
FT                   SNNGSNDGSNGGTNAGISTASRIECESMSLSGPYVSRITYPFNGIALYANGDRATANVN
FT                   FSASRNYTFKLRGCGNNNNLASVDLLIDGKKVGSFYYKGTYPWEASINNVYVSAGTHRV
FT                   ELVLSADNGTWDVYADYLLIQ"
XX
SQ   Sequence 1272 BP; 392 A; 221 C; 290 G; 369 T; 0 other;
     atggcgcagg aaacagctat gaccggtaaa agtcttgctg gctgctctga tgtgtgttgt        60
     gttggctaat cctttttatg cacaggcagc catgacattt acctctaatg caactgggac       120
     atacgatggt tactactacg agttgtggaa ggacacaggg aatactacca tgacagttga       180
     cacaggagga agatttagct gtcagtggag taacattaac aatgcactct tcagaacagg       240
     taaaaagttt agcactgcat ggaatcagct tgggactgta aagattacct actctgctac       300
     ctacaatcca aatggcaatt cctatctctg catttatgga tggtcaagaa atccacttgt       360
     tgaattttat atcgttgaaa gctggggctc atggcgtccg cccggggcaa cgtcacttgg       420
     cactgtaaca attgatggag caacatatga tatttataag acaactcgtg ttaatcagcc       480
     atctatcgaa ggaacaagaa catttgatca gtactggagt gttaggacat caaagagaac       540
     aagtggtact gttactgtaa ctgatcattt caaagcatgg gctgcaaaag gtttgaacct       600
     gggtacaatt gaccagatta cactctgtgt ggaaggttac caaagcagcg gctcagcaaa       660
     tataacacag aatacattta ctattggtgg ttcgagtagt ggctcaagta atggttcaaa       720
     taacggttca aatgatggtt ccaatggagg aacaaatgca ggaatttcaa ctgcaagcag       780
     gatagaatgt gaaagtatgt cgctcagcgg tccttatgtt tcaagaatta cttatccatt       840
     taatggtata gcactttatg cgaacggaga tagagcaacg gcaaatgtaa acttttcagc       900
     aagccgtaac tatactttta aattacgtgg atgtggaaat aacaataatt tggcatcagt       960
     tgatttactg atagatggaa agaaagtagg ttcgttctat tataagggaa catatccttg      1020
     ggaagcttct ataaataatg tgtatgtaag tgcaggtacc cacagagtgg agcttgtact      1080
     ttctgctgat aatggtacat gggatgtcta tgcggattat ttgttaatac aatgaaattc      1140
     ggaaatgttt ttaaaaatac tgcttcgaag aagcaggtat ttttttatgt tcactattat      1200
     aaagcgattg aagtcagtct tagttcatcc tagttgttct tcagaccgat catagctgtt      1260
     tccggcgcca tg                                                          1272
//
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