 |
|
EBI DbfetchID AF036923; SV 1; linear; genomic DNA; STD; PRO; 5100 BP. XX AC AF036923; XX DT 13-JAN-1998 (Rel. 54, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Caldicellulosiruptor sp. Rt69B.1 family 10 xylanase (xynB) gene, complete DE cds. XX KW . XX OS Caldicellulosiruptor sp. Rt69B.1 OC Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; OC Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor. XX RN [1] RP 1-5100 RX DOI; 10.1007/s007920050105 RX PUBMED; 10356996. RA Morris D.D., Gibbs M.D., Ford M., Thomas J., Bergquist P.L.; RT "Family 10 and 11 xylanase genes from Caldicellulosiruptor sp. strain RT Rt69B.1"; RL Extremophiles 3(2):103-111(1999). XX RN [2] RP 1-5100 RA Morris D.D., Gibbs M.D., Ford M., Thomas J., Bergquist P.L.; RT ; RL Submitted (05-DEC-1997) to the EMBL/GenBank/DDBJ databases. RL SBS, University of Auckland, 3A Symonds Street, Auckland, New Zealand XX FH Key Location/Qualifiers FH FT source 1..5100 FT /organism="Caldicellulosiruptor sp. Rt69B.1" FT /strain="Rt69B.1" FT /mol_type="genomic DNA" FT /db_xref="taxon:70295" FT CDS 216..5003 FT /codon_start=1 FT /transl_table=11 FT /gene="xynB" FT /product="family 10 xylanase" FT /EC_number="3.2.1.8" FT /note="XynB" FT /db_xref="GOA:O52373" FT /db_xref="HSSP:1I8A" FT /db_xref="InterPro:IPR013781" FT /db_xref="UniProtKB/TrEMBL:O52373" FT /protein_id="AAB95325.1" FT /translation="MKRKFVALIVLFVFLISIIAPSLSPFSYQSAMADQQNPAASYVKF FT DFENGTTQGWSPRGNSTTVETVYRIAYEGDYSLKVSGRSAAWDGAIVDVTSSVSVNTMY FT TVSLFVYHNDVKPQRFSVYAYVKDSSGERYIQVADKVVMPQYWKQIFGRFTITASNPIQ FT SVKLIVCVPSNRSLEFYADNIILTSAQQASSGVVKSCNFEGGGTEGWQARGTGSDAQIS FT VVDTVAHSGSKSLYVSGRADTWQGARIDMTNLLEKGKDYQFSIWVYQNSGSEQEITLTM FT QRKNADDSTKYDTIKWRQKVASGVWTEVSGSYTVPQTATQLIFYVESPNATLDFYLDDF FT TVIDKNPPVVNPGLIKSCNFESGTAEDFVARGSGVTVTVVDNVYYHSETKALYVSGRAD FT TWQGAQIDMTNLLEKGKDYQFSIWVYQNSGSDQKITLTMQRKNADDSTNYDTIKWQQTV FT PSGVWTEVSGSYTVPQTATQLIFYVESPNATLDFYLDDFTVIDKNPVTIPAAAKEPELE FT IPSLCQQYSQYFSIGVAIPYRVLQNPVERAMVLKHFNSITAENEMKPDAIQRTEGQFNF FT DVADQYVDFAQSNNIGIRGHTLVWHQQTPDWFFQHSDGSPLDPNNSEDKQLLRNRLKTH FT IQTLVGRYAEKVYAWDVVNEAIDENQPDGYRRSEWYRILGPTPETGGIPEYIILAFQYA FT READPNAKLFYNDYSTENPKKRQFIYNMVKALHDRGLIDGVGLQGHINVDSPAVKEIED FT TINLFSTIPGLQIQITELDISVYTSSTQQYDTLPQDIMIKQALKFKELFEMLKRHSDRI FT TNVTLWGLKDDYPWLSKDRSNWPLLFDSNYQAKYNYWAIVEPSVLPVAINKGYANNAQP FT RIDGIMDKEYKGTIPLSVLNDAGQDIAQVRALWSGNELCLYVTVNDSSVDANNDRVVIF FT IDQDNGKLPELKDDDFWVSISRNGTKNQSKTGYVKDYVVLQQLNGYTMEVKLLLNNSLA FT INTNIGFDIAVIDNGQQYSWNDRTNSQYFETDNYGILTMADSIKFASAQKGTPKIDAEL FT DDAWKNAQEIVTDTKVTVTGTVYDSAYAKARMMWDENCIYVYAVVYDPLLNKANTNPWE FT QDSIEIFIDENNHKTPYYEDDDVQYRVSYENTQTFGTNGDAKNFITATKIIPNGYVVEV FT QVYMRTTKLSEGMVIGFDIQVNDADHTGGRVGVLTWNDKVGNNWRDTTKFGCLELVAAP FT AQQPTTQQPSTSPSTSTTVTTVITPATPAPSQQQTTQQQQTQQQQQSQQTQTTAQQQQK FT TEISATQNQAIVKLEADKPATVALGQDIKVVISPNAVTNKNATVKVEKIEKVSPDIGLG FT VTIAPAVKVDVENGELVKAVQVEIKVDPISFKDDKIPFAFVIDDTNKTSIVPVKKEVNK FT VIVNTPKEGTIIVVAAKLEDVYKDVPKTHWAYDTFKQAVTSGLVVGYNDMTLRPAKNVT FT LAEAAVIVQRAFEVRPKDAGKPANVPDWAASAIKALLDNEIIAEVDDANKPLTRIEAVA FT IIMKVLENSGINVEPADIEFSDLYEQSSIDVEYLAKAYKLGIVKGYPDGTFRPQNTVTR FT AELLTLLFRALNSIKK" XX SQ Sequence 5100 BP; 1751 A; 875 C; 1127 G; 1347 T; 0 other; ggtcatagct gtttcctgcg cagcttctga caaggtaaaa aaacatccgg tgtttttggt 60 gagagtgttt aattatcagg gattaaagtc aataaaattt gtcaaattta agggggaaat 120 tagtcaaatt tttggtgttt atcttccccc gtctttattt tatattattt ataaaccgtt 180 ttcaaatttc aaatcaggga gggaaggata cttagatgaa aaggaagttt gtagctttga 240 ttgtcttgtt tgtgttttta atcagcatta tagctccatc gttaagtccg ttttcatatc 300 aaagtgccat ggcagaccag caaaatcctg cagccagtta tgtaaagttc gattttgaaa 360 atggcacaac tcaaggctgg agtccaaggg ggaatagcac aactgttgag acagtttaca 420 ggatagctta tgagggcgat tattctttaa aagtctctgg tagaagtgct gcatgggatg 480 gagcaattgt tgatgttaca tcaagtgttt cggtaaatac tatgtacact gtgtcattgt 540 ttgtttatca caatgatgta aaaccgcaga gattttcagt ttatgcatat gtgaaagata 600 gcagtggaga aaggtatata caggtagctg ataaggtagt aatgccacag tactggaaac 660 agatatttgg caggtttaca atcacagcat caaatcccat ccagagtgtt aaacttattg 720 tatgcgttcc ttcaaacaga tcgcttgaat tttacgcaga caatataata ttgacatctg 780 ctcaacaggc atcatctggg gtggttaagt cttgcaattt tgaaggcggt ggcactgaag 840 gctggcaggc aaggggaaca ggttctgatg ctcaaatttc cgtagttgat acagtagcgc 900 attcaggtag caagagtttg tatgtatcgg gaagggctga tacatggcag ggtgcacgga 960 tagacatgac aaacctgctt gagaagggga aggattatca attcagcata tgggtatatc 1020 agaacagtgg aagcgagcaa gagataaccc ttacaatgca gaggaagaat gcggatgata 1080 gtacaaaata tgataccata aaatggcggc aaaaagttgc atcgggggtt tggacagaag 1140 tttccggttc atacacagtg ccacagacag caacccagct catattctat gtggaatcgc 1200 caaatgcaac gcttgacttt taccttgacg actttactgt aatagataaa aacccacctg 1260 ttgtaaatcc gggtttgatt aagtcatgta attttgagag tggcacagca gaagattttg 1320 tagcaagagg aagtggagtt actgtaactg ttgttgataa tgtttactat cactctgaaa 1380 caaaggcatt gtatgtatcg ggaagggctg atacatggca gggtgcacag atagacatga 1440 caaacctgct tgagaagggg aaggattatc aattcagcat atgggtatat cagaacagtg 1500 gaagtgacca aaagataacc cttacaatgc agaggaagaa tgcagatgat agtacaaatt 1560 atgataccat aaaatggcag caaacagttc catctggggt ttggacagaa gtttctggtt 1620 catatacagt accacagaca gcaacccagc tcatattcta tgtggaatcg ccaaatgcaa 1680 cacttgactt ttaccttgac gactttactg taatagacaa aaacccggtt acaatacctg 1740 ctgcggcaaa agagccagag ttggagattc catcactttg ccagcaatac agccagtact 1800 tttcaattgg tgttgcaata ccatatagag tgctccaaaa cccggtagaa agagcaatgg 1860 ttttaaagca tttcaacagt attactgctg aaaatgagat gaagcccgat gctatacaaa 1920 gaacagaagg gcagttcaat ttcgatgttg cagaccagta tgttgacttt gcacagagca 1980 ataatattgg aataagaggt catacactgg tttggcatca acaaactcca gattggtttt 2040 tccagcattc tgacggttcg ccacttgatc caaacaattc tgaagacaag cagcttttga 2100 gaaataggtt aaaaacacac attcagacac ttgttggaag atatgcagag aaagtttatg 2160 catgggatgt tgtaaatgaa gcaattgatg aaaatcaacc ggatggatat agaagaagtg 2220 aatggtacag aattttagga ccaactccag aaacaggcgg aataccagag tatataatcc 2280 ttgcattcca gtatgcacgg gaagctgacc cgaacgcaaa acttttctac aacgattaca 2340 gcactgaaaa tccaaagaag agacagttta tttacaacat ggtcaaagct ttgcatgata 2400 gaggtctcat tgatggtgtt ggtctgcagg gacatattaa tgtggattcg cctgcagtca 2460 aagaaataga agatacaatc aatttattca gcacaatacc gggtcttcaa attcaaataa 2520 cagagcttga tatcagcgta tatacaagca gcactcagca atatgacaca ttaccacagg 2580 atattatgat taaacaggct ttaaaattca aagagctgtt tgaaatgtta aagcgccaca 2640 gcgacagaat cacaaatgtt acactttggg gtctcaaaga tgattatcca tggctgtcaa 2700 aagatagaag taactggcca ctgctatttg atagtaacta ccaggcaaaa tacaattact 2760 gggctattgt agaaccttcg gtgttgcctg ttgctataaa taagggatat gcgaacaatg 2820 cacagccaag aattgatggg attatggata aagaatacaa aggaaccatt ccactttcgg 2880 ttttgaatga tgcagggcag gatattgctc aggtaagggc actgtggagt ggcaatgagc 2940 tttgtcttta tgtcactgta aatgattcaa gtgtggatgc taacaatgat agggttgtaa 3000 ttttcattga tcaggacaat ggaaagttgc cagagttaaa agatgatgac ttctgggttt 3060 caatttcgag aaatggcaca aagaatcaat ccaaaactgg ctatgtaaaa gattatgtag 3120 tgttacagca attaaatgga tatacaatgg aggttaagct gcttttaaac aacagtttag 3180 caattaacac aaatattggt tttgatattg ccgtaattga taatgggcaa caatacagct 3240 ggaatgatag aacaaactca caatattttg aaacagataa ttatggaatt ttaacaatgg 3300 cagacagtat aaaatttgct tcagcacaga agggaacgcc aaagatcgac gcagaattag 3360 atgatgcatg gaaaaatgca caggagatag taactgacac aaaagtaaca gtaacaggca 3420 cagtatatga ttcagcatat gcaaaagcaa ggatgatgtg ggatgaaaat tgcatctatg 3480 tatatgcagt tgtctatgat ccacttttga acaaggcaaa cacaaatccc tgggaacagg 3540 attctattga aatatttatt gatgaaaaca accataagac gccttactat gaagacgatg 3600 atgtccagta cagagtaagc tatgaaaata ctcagacatt tggaacaaat ggtgatgcta 3660 agaactttat tacagcaaca aaaataattc caaatgggta tgttgttgaa gtccaggttt 3720 acatgaggac aactaaactc tccgaaggaa tggttatagg ttttgatatt caggtcaatg 3780 atgctgacca tacaggcgga agagtagggg tattgacctg gaatgataaa gtcggcaaca 3840 attggagaga cacaactaaa ttcggttgct tggagcttgt tgctgcgcct gcacagcaac 3900 caaccacaca gcagccatca acatcgcctt cgacatcaac gacagtaaca actgttataa 3960 caccagcaac accggctccg tcgcagcagc aaaccactca gcagcaacaa acacaacaac 4020 agcaacaaag tcagcagaca cagacaacag cgcagcaaca gcaaaaaaca gagatatcag 4080 ctactcaaaa ccaggcaatt gtaaaacttg aagctgacaa gccagcaact gtagccctgg 4140 ggcaggacat aaaagttgtt atttcaccaa atgctgtgac aaacaaaaat gctactgtta 4200 aagttgaaaa aattgaaaag gtaagccctg atataggctt gggtgtgaca attgcacctg 4260 ctgtaaaggt tgatgttgag aatggtgaac ttgtaaaagc tgtacaggtt gaaataaaag 4320 ttgatccgat ttccttcaaa gatgataaaa ttccatttgc gtttgttata gatgatacaa 4380 ataaaacctc tattgtacct gtaaagaaag aggtaaacaa agtgatagta aatactccaa 4440 aagaaggtac aattattgtg gttgctgcaa aattagaaga tgtttataaa gatgtgccaa 4500 aaactcactg ggcatatgac acatttaagc aggcagtaac atccggttta gttgtgggct 4560 acaacgatat gacattaaga cctgcaaaga atgtaacact tgctgaagca gctgtgattg 4620 ttcagagagc atttgaagtt cgaccaaagg atgctggtaa acctgccaat gtccctgatt 4680 gggcagcttc agctattaaa gcactgcttg ataatgagat tattgcagag gttgatgatg 4740 ctaataaacc gctgacgcga atcgaggctg ttgcaataat tatgaaggta ttagaaaatt 4800 caggaataaa tgttgaacct gcggatattg aatttagcga tttgtatgaa cagtcatcaa 4860 ttgacgttga atatcttgct aaagcataca aacttggaat tgtcaaagga tatccagatg 4920 gaacattcag accacagaac acagttacaa gagcagagct gctgacatta ctctttagag 4980 ctttgaacag cataaaaaag tagcctgaag aagaggagct gaccaaaaag gttggctcct 5040 cttttttata ttagtttagg tatatacgga ataaacatat caaattttta cactcaattt 5100 // |
|