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EBI DbfetchID AF034138; SV 1; linear; genomic DNA; STD; PRO; 5761 BP. XX AC AF034138; XX DT 30-NOV-1997 (Rel. 53, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Bacillus subtilis yjoB gene, partial cds; aspartate phosphatase of the DE phosphorelay (rapA), pre-inhibitor protein of RapA (phrA), yjpA, DE N-acetylmuramoyl-L-alanine amidase (xlyB), yjqA, yjqB, yjqC, and xkdA DE genes, complete cds. XX KW . XX OS Bacillus subtilis OC Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus. XX RN [1] RP 1-5761 RA Da Silva E., Karamata D.; RT "Sequencing and characterisation of the region comprising XlyB, the second RT lytic enzyme of the defective prophage PBSX of Bacillus subtilis"; RL Unpublished. XX RN [2] RP 1-5761 RA Da Silva E., Karamata D.; RT ; RL Submitted (11-NOV-1997) to the EMBL/GenBank/DDBJ databases. RL Institut de genetique et de biologie microbiennes, Rue Cesar-Roux 19, RL Lausanne CH-1005, Switzerland XX FH Key Location/Qualifiers FH FT source 1..5761 FT /organism="Bacillus subtilis" FT /strain="168" FT /mol_type="genomic DNA" FT /db_xref="taxon:1423" FT CDS <1..452 FT /codon_start=3 FT /transl_table=11 FT /gene="yjoB" FT /note="similar to cell division cycle protein CDC48 of FT Arabidopsis thaliana" FT /db_xref="GOA:Q7BUX4" FT /db_xref="InterPro:IPR003959" FT /db_xref="UniProtKB/TrEMBL:Q7BUX4" FT /protein_id="AAB87519.1" FT /translation="AVLVIEDIDSMPEDVRSFFLNTLDGATSKEGLFLIGTTNYPEEID FT PGLMNRAGRFDRAYEIGLPDEELRLEYMKMRGFGIFLSEGEIKNAAKLTEGFSFAQLGE FT LYVSSALQWHQEGNHHIETMVKDMTGEQRKSQRGSWMERNKVGFH" FT stem_loop 453..489 FT RBS 585..592 FT /gene="rapA" FT CDS 597..1733 FT /codon_start=1 FT /transl_table=11 FT /gene="rapA" FT /product="aspartate phosphatase of the phosphorelay" FT /db_xref="GOA:Q00828" FT /db_xref="InterPro:IPR019734" FT /db_xref="UniProtKB/Swiss-Prot:Q00828" FT /protein_id="AAB87511.1" FT /translation="MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDM FT EEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLEFSELLEDIEGNQYKLTGLLEYYFN FT FFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVSMSY FT AVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLIS FT SALYNLGNCYEKMGELQKAAEYFGKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQ FT KKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVSHTFQFLEEHMLYPYIEELAH FT DAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI" FT RBS 1705..1713 FT /gene="phrA" FT CDS 1723..1857 FT /codon_start=1 FT /transl_table=11 FT /gene="phrA" FT /product="pre-inhibitor protein of RapA" FT /db_xref="UniProtKB/Swiss-Prot:Q00829" FT /protein_id="AAB87512.1" FT /translation="MKSKWMSGLLLVAVGFSFTQVMVHAGETANTEGKTFHIAARNQT" FT stem_loop 1864..1889 FT CDS complement(1888..2130) FT /codon_start=1 FT /transl_table=11 FT /gene="yjpA" FT /product="unknown" FT /db_xref="InterPro:IPR005545" FT /db_xref="UniProtKB/TrEMBL:C0SPA2" FT /protein_id="AAB87513.1" FT /translation="MLTMRTEKFNQEHVAGHYEFLDRLQAEKRLKMFGPFSDATGGAYV FT IEADSLEEAAEIGHADPLVASGSSELTIKEWKLKK" FT RBS complement(2155..2159) FT /gene="yjpA" FT RBS 2254..2259 FT /gene="xlyB" FT CDS 2267..3220 FT /codon_start=1 FT /transl_table=11 FT /gene="xlyB" FT /product="N-acetylmuramoyl-L-alanine amidase" FT /db_xref="GOA:O34391" FT /db_xref="HSSP:1LBU" FT /db_xref="InterPro:IPR002477" FT /db_xref="UniProtKB/Swiss-Prot:O34391" FT /protein_id="AAB87514.1" FT /translation="MSIPVKKNLVSEAKYALKCPNAMSAEYITIHNTANDASAANEISY FT MIGNTSSTSFHFAVDDQEVIQGLPLNRNAWHTGDGTNGPGNRKSIGVEICYSKSGGPKY FT EAAEALAISFVAQLLKERGWGIDRVRKHQDWSGKYCPHRILSEGRWDQVKAAIEKELNG FT GVSAKKAAVSSSASEYHVKKGDTLSGIAASHGASVKTLQSINHITDPNHIKIGQVIKLP FT QTASASKSHAASSYPLPSGVIKVTSPLTQGTKVKQVQTALAALYFYPDKGAKNHGVDGV FT YGPKTANAVKRFQSVSGLTADGIYGPKTKAKMEEKL" FT stem_loop 3222..3254 FT CDS complement(3257..3634) FT /codon_start=1 FT /transl_table=11 FT /gene="yjqA" FT /product="unknown" FT /db_xref="InterPro:IPR012544" FT /db_xref="UniProtKB/TrEMBL:O34593" FT /protein_id="AAB87515.1" FT /translation="MGFIDGLLGNASTLSTAAVQEELAHILLEGEKVEAAFKLVRDLIV FT FTDKRLILVDKQGITGKKTEFQSIPYKSISRFSVETAGRFDLDSELKIWISGAELPAVS FT KQFKKDESIYDIQKVLAAVCM" FT RBS complement(3640..3648) FT /gene="yjqA" FT RBS 3724..3731 FT /gene="yjqB" FT CDS 3740..4342 FT /codon_start=1 FT /transl_table=11 FT /gene="yjqB" FT /note="similar to the Bacillus subtilis phage SPP1 FT hypothetical orf37.1 gene product" FT /db_xref="InterPro:IPR008585" FT /db_xref="UniProtKB/Swiss-Prot:O34785" FT /protein_id="AAB87516.1" FT /translation="MEDMYDSFAALSASESEYRIIYEEKNGSELIVLGPHGGRIEPGVS FT ELVRAFSDRCSIYLFEGLKQRNNRSLHLTSIRFDEPLALEKVNDHHYALAFHGYYDPKI FT PHTLVGGADRKKAKLICERLNEAGFSAELTNEKDRLAGVHPNNIVNRTKREMGLQLEVS FT TAQRNALFRNFGCRDKSYIQNDLFDRYVEAVKLGFYT" FT RBS 4404..4411 FT /gene="yjqC" FT CDS 4419..5255 FT /codon_start=1 FT /transl_table=11 FT /gene="yjqC" FT /note="similar to the hypothetical Bacillus subtilis cotJC FT gene product" FT /db_xref="GOA:O34423" FT /db_xref="InterPro:IPR012347" FT /db_xref="UniProtKB/Swiss-Prot:O34423" FT /protein_id="AAB87517.1" FT /translation="MFYHIKELQYQAKSAHPDPVYAKKLQEVLGGQFGEISVMMQYLFQ FT GFNCRADAKYKDLLYDVGTEEIGHVEMLATMISRLLDNAPADVQEDAYKSNPAIAAVMS FT GMNPQHAIVSGLGAMASDSEGYPWNAKYIISSGNLLADFRANLNAEAQGRLQVTRLYAM FT TDDPGVRDMLSFLIARDTYHQNMWYAAIKELEERERDIVVPTTFPRELEKQEVSYDLFN FT FSRGDESSQGRWAHGEAFDGRGEFRYIPAPIAFASAPHLKPAPMWLHNTVPPMSKC" FT stem_loop 5265..5291 FT CDS complement(5299..5751) FT /codon_start=1 FT /transl_table=11 FT /gene="xkdA" FT /note="hypothetical 6.5K protein of Bacillus subtilis phage FT PBSX" FT /db_xref="InterPro:IPR010359" FT /db_xref="UniProtKB/Swiss-Prot:P39780" FT /protein_id="AAB87518.1" FT /translation="MVKYDGMYSIVLNQKKSREEQWEDFGHELCHVLKHAGNHFQMNKL FT FRELQEFQANQFMYHFCVPTFMLLQMELPQWRSQALATIAAVFRVTKEFADKRLDMFER FT CKAGIQFQKRLAYLLSHKRPNAYEEGDQQHLQVAEEKALYHIGKNI" XX SQ Sequence 5761 BP; 1653 A; 1217 C; 1378 G; 1513 T; 0 other; ctgcagttct ggtcatcgag gatatagatt cgatgccgga agatgtgcgg tccttttttc 60 tcaatacgct ggacggcgcg acatcaaaag aggggctatt tctcatcggt acgacaaact 120 atcccgaaga gatcgatcca ggtttgatga atcgtgcagg acgatttgac cgtgcctatg 180 aaatcgggct tccggatgaa gagctgcggc tggaatatat gaaaatgaga ggctttggca 240 tctttttgag tgaaggagaa ataaaaaacg ccgcaaaact tacagaaggc ttttcctttg 300 cacagctggg agaattatat gtatcttcag cccttcaatg gcaccaagaa gggaatcacc 360 atattgaaac catggtgaaa gacatgacag gagagcaaag aaaaagccag cggggaagct 420 ggatggaaag aaacaaagtc ggttttcact aaaagaaagc acgggtgttt gaaaaacccg 480 tgcttttttg ttgcggttag ccgaaattcg acaattgcgg ttattttgcg ttcttctttt 540 tcttgtaaat atgataaaat atgacatatc tcgggtaatt caaaaggggg gattaattga 600 ggatgaagca gacgattccg tcctcttatg tcgggcttaa aattaatgaa tggtatactc 660 atatccggca gttccacgtc gctgaagccg aacgggtcaa gctcgaagta gaaagagaaa 720 ttgaggatat ggaagaagac caagatttgc tgctgtatta ttctttaatg gagttcaggc 780 accgtgtcat gctggattac attaagcctt ttggagagga cacgtcgcag ctagagtttt 840 cagaattgtt agaagacatc gaagggaatc agtacaagct gacagggctt ctcgaatatt 900 actttaattt ttttcgagga atgtatgaat ttaagcagaa gatgtttgtc agtgccatga 960 tgtattataa acgggcagaa aagaatcttg ccctcgtctc ggatgatatt gagaaagcag 1020 agtttgcttt taaaatggct gagatttttt acaatttaaa acaaacctat gtttcgatga 1080 gctacgccgt tcaggcatta gaaacatacc aaatgtatga aacgtacacc gtccgcagaa 1140 tccaatgtga attcgttatt gcaggtaatt atgatgatat gcagtatcca gaaagagcat 1200 tgccccactt agaactggct ttagatcttg caaagaaaga aggcaatccc cgcctgatca 1260 gttctgccct atataatctc ggaaactgct atgagaaaat gggtgaactg caaaaggcag 1320 ccgaatactt tgggaaatct gtttctattt gcaagtcgga aaagttcgat aatcttccgc 1380 attctatcta ctctttaaca caagttctgt ataaacaaaa aaatgacgcc gaagcgcaaa 1440 aaaagtatcg tgaaggattg gaaatcgccc gtcaatacag tgatgaatta tttgtggagc 1500 tttttcaatt tttacatgcg ttatacggaa aaaacattga cacagaatca gtctcacaca 1560 cctttcaatt tcttgaagaa catatgctgt atccttatat tgaagagctg gcgcatgatg 1620 ctgcccaatt ctatatagaa aacggacagc ccgaaaaagc actttcattt tatgagaaaa 1680 tggtgcacgc acaaaaacaa atccagagag gagattgttt atatgaaatc taaatggatg 1740 tcaggtttgt tgctcgttgc ggtcgggttc agctttactc aggtgatggt tcatgcaggt 1800 gaaacagcaa acacagaagg gaaaacattt catattgcgg cacgcaatca aacatgatgc 1860 ataaaaaaag acccttaggg gtctttttta tttcttcagc ttccattctt ttatcgtcag 1920 ctcagaagat ccacttgcca ccagcggatc cgcatggccg atttccgctg cctcttccag 1980 tgaatctgct tcgatgacat acgctccgcc tgtggcgtcg ctgaatggcc caaacatttt 2040 taaacgtttt tctgcctgta aacgatccag aaattcatag tgcccagcca catgctcctg 2100 attaaatttc tccgttctca ttgtcagcat taaatatggt atacatattc agaccctccg 2160 tgaacttcag tttaacacat ttatccatat tacggtgata gatgatatga gcttttcgtc 2220 ctacgaatgc cacctattta tgaaaaaaga aaaggagaga tgataggtga gcattccagt 2280 aaagaaaaat ttggtttctg aggcgaaata cgcgttgaag tgtcctaatg caatgtccgc 2340 tgaatacatt accattcaca acacggcaaa cgatgcatca gcggccaatg aaatcagcta 2400 tatgatcggg aacacaagct cgacaagctt tcattttgcg gtcgatgatc aagaggtgat 2460 tcaaggtctg ccgcttaacc gaaacgcttg gcacactggt gacggcacaa acggtccggg 2520 aaaccgcaaa tcaatcggtg ttgagatttg ctacagcaaa tcgggaggcc cgaagtatga 2580 ggcagctgaa gccttggcga tttcatttgt tgcacagctg ttgaaggagc gcggctgggg 2640 catcgatcgg gtgagaaagc atcaggactg gagcggaaag tattgcccgc accgcatttt 2700 atcagagggg cgctgggatc aagtgaaggc ggcgattgaa aaggaattaa acgggggcgt 2760 atcagcgaaa aaagctgcag tctcttcttc ggcgtctgaa tatcatgtaa aaaaaggtga 2820 cacactgtca gggattgccg catcacacgg ggccagtgtg aaaacgctgc aaagcataaa 2880 tcatatcact gacccgaacc acatcaaaat cggacaggtg atcaaactgc ctcagacggc 2940 atctgcttct aaaagccatg ccgcatcctc atatccgctc ccatccggcg tgatcaaagt 3000 gacaagcccg ctgacgcaag ggacaaaagt aaagcaggtg cagactgctt tagccgctct 3060 ttatttttat cctgataaag gagcgaaaaa tcacggcgtt gacggcgttt atggcccgaa 3120 aacagctaat gcagtgaaac gttttcagtc tgtcagcggt ttaacggctg atgggattta 3180 cggtccgaaa acgaaagcga agatggagga aaagctgtaa atgaaaagac ggaagctgtg 3240 aagcttgctt ttcgccttac atacaaactg cggcaagcac cttttgaata tcataaatgc 3300 tttcatcttt tttaaactgc tttgagacag cgggaagttc cgcgccggag atccaaattt 3360 tcagctctga atcaaggtca aagcggccgg cagtttccac gctgaatctg gaaatgcttt 3420 tgtacggaat cgattgaaat tccgttttct tgcctgtaat tccctgttta tctacaagga 3480 taagccgctt gtcagtaaag acaatcaaat cgcgaaccag cttaaacgcg gcttcaacct 3540 tctcaccctc aagtaaaata tgggcaagct cttcttgcac agctgccgtt gacagtgttg 3600 atgcattgcc gagtaatcca tcaataaacc ccatcatata cctcctctgc gtattctatc 3660 aaatcatact ataaaaaagg ttttcattca tagatgagta gagtaaactg gtgctgactg 3720 gtaaaggggg gcgttcaaga tggaagatat gtatgacagc tttgcggccc tttctgcttc 3780 tgagtcggag taccggatta tttatgagga gaaaaacgga agtgagctta tcgtcctcgg 3840 tcctcacggc ggcagaattg agcctggcgt cagtgaactg gtgcgggcat tttcggatcg 3900 atgttccatc tatttgtttg agggtctaaa gcagcgaaac aaccgttcct tgcatctcac 3960 tagcattcgt tttgatgagc cgctggcttt agaaaaagtg aatgaccacc attacgcatt 4020 agcgtttcac gggtattatg atccgaaaat cccgcataca ttggtcggcg gggcggatcg 4080 taaaaaagcc aagctcattt gtgagcgtct gaatgaagcg ggttttagcg ccgagctcac 4140 taatgagaaa gaccgcctgg caggtgtaca cccaaacaat attgtcaatc ggacgaaaag 4200 agaaatggga ctgcaattgg aggtaagcac ggcacagcga aatgcgctat tccgcaattt 4260 tgggtgccgt gataaaagct acatacaaaa cgatttgttt gatcgatatg tggaagccgt 4320 caagcttggc ttttatacat aaaactagac gggacctgca cggttggcct attccttcat 4380 acgctggggt tgtgcgaaag tgtggggagg aatgattcat gttttatcat ataaaagagc 4440 ttcaatatca agcaaagtca gctcatcccg atccggttta tgcgaaaaaa cttcaagagg 4500 tgctcggcgg ccaattcggt gaaattagcg tcatgatgca gtatttgttt caagggttta 4560 actgcagggc ggatgctaag tataaagatt tgttatatga tgtggggacc gaagagattg 4620 ggcacgtaga aatgctggca acgatgattt ccaggcttct ggacaatgca cccgcggatg 4680 tacaggagga tgcttataaa agcaatcccg ctattgcagc agtcatgtca gggatgaacc 4740 ctcagcacgc gattgtgtcc ggattggggg cgatggcatc agatagtgag ggctatccgt 4800 ggaatgcaaa atacattatc tcaagcggaa acctgctggc cgattttcgc gctaacttaa 4860 atgcggaggc ccaaggacgc cttcaggtga cacggcttta tgccatgacc gatgatccag 4920 gggtaagaga tatgctgtca tttttgattg caagggatac ctatcatcaa aatatgtggt 4980 acgcggccat taaagagctg gaggaaagag aacgggatat tgtcgtcccg acgacgtttc 5040 cgcgtgagct cgaaaagcag gaagtctcct atgacctgtt taacttttcc aggggagatg 5100 aaagctcaca aggaagatgg gcacatgggg aagcctttga cggccggggt gaattcaggt 5160 atatcccggc tccgattgcg ttcgcatctg cgcctcatct taaaccggcg cccatgtggc 5220 tgcataatac agttccccca atgtcgaaat gttaggttct cttctgggct gaggaatata 5280 tcctcagccc gtatttgatc agatgttttt accaatatga tataacgctt tttcctcagc 5340 gacctgcaag tgctgctgat cgccttcctc gtacgcattt ggccgcttgt gagataataa 5400 ataagcgagc cgcttctgaa attgaatacc tgctttacac cgttcaaaca tgtcaagcct 5460 tttatcagca aattcctttg ttacccggaa taccgccgca attgtggcga gtgcctggct 5520 tctccattgc ggcagttcca tctgcaacag cataaaggtt ggcacacaga agtggtacat 5580 aaattgattt gcctggaatt cctgaagctc tctgaagagc ttgttcatct gaaaatgatt 5640 gcctgcatgc tttaacacgt ggcacagctc atggccaaaa tcctcccatt gctcttcccg 5700 tgactttttt tggttcaata cgatactgta catgccgtcg tatttcacca tcatgctccc 5760 c 5761 // |
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