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EBI DbfetchID AF031590; SV 1; linear; genomic DNA; STD; PRO; 6676 BP. XX AC AF031590; AF003285; Y16311; XX DT 23-FEB-1998 (Rel. 54, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 5) XX DE Streptomyces coelicolor thioredoxin (trxA) gene, partial cds; SpoOJ-like, DE Soj-like, GidB-like, Jag-like, inner membrane protein, and 9-10kDa DE protein-like genes, complete cds; RNase P protein (rnpA) gene, partial cds; DE and unknown gene. XX KW . XX OS Streptomyces coelicolor A3(2) OC Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; OC Streptomycineae; Streptomycetaceae; Streptomyces. XX RN [1] RP 1-6676 RX DOI; 10.1016/S0378-1119(98)00357-6 RX PUBMED; 9795152. RA Gal-Mor O., Borovok I., Av-Gay Y., Cohen G., Aharonowitz Y.; RT "Gene organization in the trxA/B-oriC region of the Streptomyces coelicolor RT chromosome and comparison with other eubacteria"; RL Gene 217(1-2):83-90(1998). XX RN [2] RP 1-6676 RA Gal-Mor O., Borovok I., Cohen G., Aharonowitz Y.; RT ; RL Submitted (28-OCT-1997) to the EMBL/GenBank/DDBJ databases. RL Molecular Microbiology and Biotechnology, Tel-Aviv University, Ramat Aviv, RL Tel-Aviv 69978, Israel XX CC On or before Jul 19, 2000 this sequence version replaced CC gi:2826871, gi:2150138. XX FH Key Location/Qualifiers FH FT source 1..6676 FT /organism="Streptomyces coelicolor A3(2)" FT /map="between trxB/A cluster and rnpA; oriC" FT /strain="3A(2); M145" FT /mol_type="genomic DNA" FT /clone="cosmid H24" FT /db_xref="taxon:100226" FT gene <1..24 FT /gene="trxA" FT CDS <1..24 FT /codon_start=1 FT /transl_table=11 FT /gene="trxA" FT /product="thioredoxin" FT /note="component of thioredoxin reductase system; thiol FT disulfide redox" FT /db_xref="GOA:P52230" FT /db_xref="InterPro:IPR005746" FT /db_xref="InterPro:IPR006662" FT /db_xref="InterPro:IPR012335" FT /db_xref="InterPro:IPR012336" FT /db_xref="InterPro:IPR013766" FT /db_xref="InterPro:IPR015467" FT /db_xref="InterPro:IPR017936" FT /db_xref="InterPro:IPR017937" FT /db_xref="PDB:1T00" FT /db_xref="UniProtKB/Swiss-Prot:P52230" FT /protein_id="AAC03481.1" FT /translation="LEDFIAD" FT misc_feature 26..39 FT /note="palindrome" FT CDS complement(100..717) FT /codon_start=1 FT /transl_table=11 FT /product="unknown" FT /note="ORF205; similar to M. leprae cosmid L222-ORF1 FT hypothetical protein encoded by GenBank Accession Number FT L39923" FT /db_xref="GOA:O07326" FT /db_xref="InterPro:IPR000182" FT /db_xref="InterPro:IPR016181" FT /db_xref="UniProtKB/TrEMBL:O07326" FT /protein_id="AAC03482.1" FT /translation="MGRRLVPLTLDNLQDLPQRCRSCVFWELDPVSGEAAVEAGTAALE FT KESWISAVLLDWGSCGRVVYVDDVPVGFVLYAPPAYVPRSAAFPTSPVSSDAVQLMTAF FT VMPGYQGQGLGRVMVQTVAKDLLRRGFKAIEAFGDARWKEPACVLPADHLLAVGFKTVR FT PHPRHPRLALDLRSTLSWKEDVEMALDRLLGAVQKEPVLRPL" FT RBS complement(727..731) FT /note="ORF205" FT /inference="non-experimental evidence, no additional FT details recorded" FT CDS complement(1055..2089) FT /codon_start=1 FT /transl_table=11 FT /product="SpoOJ-like" FT /note="ORF344; similar to M. leprae ORF333 hypothetical FT 35.8 kDa protein encoded by GenBank Accession Number FT L39923; similar to B. subtilis stage 0 sporulation protein FT Spo0J: SwissProt Accession Number P26497; similar to C. FT crescentus chromosome partitioning protein ParB encoded by FT GenBank Accession Number U87804" FT /db_xref="GOA:O07327" FT /db_xref="InterPro:IPR003115" FT /db_xref="InterPro:IPR004437" FT /db_xref="UniProtKB/TrEMBL:O07327" FT /protein_id="AAC03483.1" FT /translation="MPRRPWGARLSAAPGAMPLLPNERGVAAAKVATLQHVSRETEELT FT APQGVEGLRPPMGAHFAEVPLDAITPNPKQPRKDFDDDALAELVTSIREVGLLQPVVVR FT PTEPGRYELIMGERRFRACRELELDAIPAIVRATEDEKLLLDALLENLHRAQLNPLEEA FT FAYDQLLKDFNCTHDQLADRIGRSRPQVSNTLRLLKLSPKVQNRVAAGVLSAGHARALL FT SVDDPEEQDRLAHRIVAEGLSVRSVEEIVTLMGSRPQKPQRAKGPRAGSLVSPALSDLA FT TRLSDRFETRVKVDLGQKKGKITVEFASMDDLERILGSLAPGEGPVLQKGLLEGEDEDG FT DAES" FT misc_feature 1968..1981 FT /note="palindrome" FT RBS complement(2094..2099) FT /note="ORF344" FT /inference="non-experimental evidence, no additional FT details recorded" FT CDS complement(2220..2987) FT /codon_start=1 FT /transl_table=11 FT /product="Soj-like" FT /note="ORF255; similar to M. leprae ORF278 hypothetical FT protein encoded by GenBank Accession Number L39923; similar FT to hypothetical protein Soj: SwissProt Accession Number FT P37522; and to C. crescentus chromosome partitioning FT protein ParA belonging to ATPase superfamily encoded by FT GenBank Accession Number U87804" FT /db_xref="GOA:O07328" FT /db_xref="HSSP:1G3Q" FT /db_xref="InterPro:IPR002586" FT /db_xref="UniProtKB/TrEMBL:O07328" FT /protein_id="AAC03484.1" FT /translation="MVVANQKGGVGKTTTTVNLAASLALHGARVLVVDLDPQGNASTAL FT GIDHHADVPSIYDVLVESRPLSEVVQPVPDVEGLFCAPATIDLAGAEIELVSLVARESR FT LQRAITAYEQPLDYILIDCPPSLGLLTVNALVAGQEVLIPIQCEYYALEGLGQLLRNVD FT LVRGHLNPTLHVSTILLTMYDGRTRLASQVADEVRSHFGEEVLRTSIPRSVRISEAPSY FT GQTVLTYDPGSSGALSYLEAAREIALKGVGVHL" FT RBS complement(2996..3002) FT /note="ORF255" FT /inference="non-experimental evidence, no additional FT details recorded" FT misc_feature 3094..3107 FT /note="palindrome" FT misc_feature 3392..3405 FT /note="palindrome" FT CDS complement(3539..4258) FT /codon_start=1 FT /transl_table=11 FT /product="GidB-like" FT /note="ORF239; similar to M. leprae hypothetical protein FT GidB encoded by GenBank Accession Number L39923" FT /db_xref="GOA:O54571" FT /db_xref="InterPro:IPR003682" FT /db_xref="UniProtKB/Swiss-Prot:O54571" FT /protein_id="AAC03485.1" FT /translation="MSEAAELPPVPEQARDVFGDRYADAVRYAELLAEAGVKRGLIGPR FT EVPRLWERHLLNCAVLSEVVPEGVTVCDVGSGAGLPGIPLALVREDLKITLLEPLLRRT FT NFLTEVVELLGLDHVTVVRGRAEEVMGKLPPVHVVTARAVAPLDRLATWGIPLLRPYGE FT MLALKGDTAEEELKAATAALSKLGAEQTSILHVGEGVVSPLSTVVRVEVGESPGGVRFA FT AKRAKAARTGRTRRRRG" FT RBS complement(4267..4273) FT /note="ORF239" FT /inference="non-experimental evidence, no additional FT details recorded" FT CDS complement(4383..4895) FT /codon_start=1 FT /transl_table=11 FT /product="Jag-like" FT /note="ORF170; similar to M.leprae cosmid L222-ORF193 FT encoded by GenBank Accession Number L39923" FT /db_xref="GOA:Q7BUY9" FT /db_xref="InterPro:IPR001374" FT /db_xref="InterPro:IPR004087" FT /db_xref="UniProtKB/TrEMBL:Q7BUY9" FT /protein_id="AAC03486.1" FT /translation="MTEGTISAAAEGADTLTRLEQEGEIAADYLEGLLDIADLDGDIDM FT DVEADRASVSIISDSKSRDLEKLVGRDGEVLEALQELTRLAVHRETGDRSRLMLDIAGY FT RADKRAELSELGAKAAAEVRSSGESVQLKPMTPFERKVVHDAVKAAGLRSESEGEEPER FT FVVVLPA" FT RBS complement(4904..4910) FT /note="ORF170" FT /inference="non-experimental evidence, no additional FT details recorded" FT CDS complement(4911..6206) FT /codon_start=1 FT /transl_table=11 FT /product="inner membrane protein" FT /note="ORF431; similar to 60 kDa inner membrane proteins in FT many bacteria" FT /db_xref="GOA:O54569" FT /db_xref="InterPro:IPR001708" FT /db_xref="InterPro:IPR020001" FT /db_xref="UniProtKB/Swiss-Prot:O54569" FT /protein_id="AAC03487.1" FT /translation="MDTIASLFSFITWPVSWVIVQFHTVYGAIFGPDTGWAWGLSIVSL FT VILIRICLIPLFVKQIKATRGMQTLQPEMKKIQERYKNDKQRQSEEMMKLYKETGTNPL FT SSCLPILAQSPFFFALYHVLNGIASGDTIGKINQPLLESAQKAHIFGAPLAAKFTDGAS FT KVESLGASLTDVRVITAVMIVLMSASQFFTQRQLMTKNVDTSVKTPFMQQQKMLMYVFP FT VMFAVFGINFPVGVLVYWLTTNVWTMGQQMYVIRNNPTPGSKAQASYLERLHKSVTEHG FT RTRRRGEKAIVKAIVAKGRDRNEAERKFINGLNKAGLAAQADGNVVKNDAAVAVQSEDG FT STVTTTAQPKRQQPKRQSKSQRQAKPAGETEPKTSLTKSDEPQDAEPAGKQDAKPAAGA FT KKPAQKSGGGGRSKAQSGQRKGPQRPKSPSKK" FT CDS complement(6210..6584) FT /codon_start=1 FT /transl_table=11 FT /product="9-10kDa protein-like" FT /note="ORF124; similar to many other proteins located near FT the bacterial chromosomal origin of replication; known as FT 9-10 kDa proteins" FT /db_xref="InterPro:IPR002696" FT /db_xref="UniProtKB/Swiss-Prot:O54625" FT /protein_id="AAC03488.1" FT /translation="MKYPLLALIKLYQWTISPLLGPVCKYYPSCSHYGYTAIDRHGAVK FT GTALTAWRILRCNPWSLGGVDHVPPRKRPRWHEMLRAAWRARKGGTSAAEPATEGRPAH FT PSSSDPSSPAAETSPHAQGA" FT RBS complement(6215..6219) FT /note="ORF431" FT /inference="non-experimental evidence, no additional FT details recorded" FT gene 6581..>6676 FT /gene="rnpA" FT CDS complement(6581..>6676) FT /codon_start=1 FT /transl_table=11 FT /product="RNase P protein" FT /db_xref="UniProtKB/TrEMBL:Q9S5Z5" FT /protein_id="AAC03489.1" FT /translation="RALPGAGDADHAQLARDLDAALARLLGGGAR" FT RBS complement(6591..6599) FT /note="ORF124" FT /inference="non-experimental evidence, no additional FT details recorded" XX SQ Sequence 6676 BP; 1071 A; 2284 C; 2205 G; 1116 T; 0 other; ctcgaggact tcatcgccga ctgacgtttc acgtgaaaca cgaatgggcc gacccgaacg 60 ggtcggccca tttggtgtac agcggtctcc ggtgccgagc tacagcggcc gcagcaccgg 120 ctccttctgc acggcgccca gcaggcggtc cagtgccatc tccacgtctt ccttccagga 180 cagcgtggag cgaagatcca acgccagccg cggatgccgg ggatgtggtc ggaccgtctt 240 gaagcccacc gccaggagat gatccgccgg cagaacgcag gcgggctcct tccagcgggc 300 atcgccgaac gcctcgatgg ccttgaagcc acgacgcagg agatccttgg cgaccgtctg 360 gaccatcacc cggcccagcc cttggccctg gtaccccggc atcacgaacg cggtcatcaa 420 ctgaaccgcg tcggaggaga ccgggctggt ggggaaagcg gccgagcgcg gcacatacgc 480 gggcggtgcg tagagaacga agcccaccgg cacgtcgtcg acgtagacca ctcggccgca 540 ggatccccag tccagcagca cggcggagat ccaggactcc ttctccaggg ccgccgtacc 600 ggcctctacc gcggcctcgc cgctgacggg gtccagttcc cagaagacgc acgagcgaca 660 gcgctgggga aggtcctgaa ggttgtccag cgtgagcggt acgagcctgc gccccatgaa 720 gggtgttcct cgcttccttc ccctgccgcg tcgcgggcgg ctgtcagagc gctccgttcc 780 ctgagcaggc tgccgatgaa cccaccgacc gcgcccagcc ccaagcccgc gctcacccat 840 tcggtgcggc tcatcgttcg catggcccct gccttcctcc cagaggtacc gccaggtgac 900 aacgctctcc cgctcgcatc gtatccacga tgcggtggac ccgacaccga cgcaaagcaa 960 agggcggacc gtgttccggt atgcaccgga cacagtccgc cctgtgccgc tcctacggca 1020 gtcggagcgc ccctggacgc tccgcctacc ggagtcagga ctcggcgtcc ccgtcctcgt 1080 cctcgccctc cagaaggccc ttctgcagca cggggccctc tccgggagcg agactgccga 1140 ggatccgctc aaggtcgtcc atggaggcga actccacggt gatcttgccc ttcttctgac 1200 ccaggtcgac cttcacacgc gtctcgaagc gatccgagag ccgcgtcgcg aggtccgaca 1260 gcgctgggga gaccagagag ccggcccgcg ggcccttggc tcgctgcggc ttctgcggcc 1320 gggaccccat gagggtcacg atctcttcga ccgaccgcac cgagagccct tcggccacga 1380 tgcgatgcgc cagtcgatcc tgctcctccg ggtcgtcgac ggacaggagg gctcgcgcgt 1440 gccccgcgga gagcacacct gcggccaccc ggttctgcac cttcggggag agcttcagca 1500 gacgcagggt gttggacacc tgcgggcggg agcggccgat acggtccgcc agctggtcat 1560 gcgtgcagtt gaagtccttc agcaactggt cgtaggcgaa ggcctcctcc agcggattca 1620 gctgagcgcg gtgcaggttc tccaggagcg cgtccagaag aagcttctcg tcctccgtcg 1680 cccgcacgat cgccgggatg gcgtccagct ccagctctcg gcaggcgcgg aagcggcgct 1740 cgcccatgat gagctcatag cgcccaggtt ccgtcggccg aacgacaacc ggctggagga 1800 gcccgacctc tcggatggag gtgacgagct cggccagcgc gtcgtcgtca aagtccttgc 1860 gcggctgctt cgggttcggc gtgatggcgt caagtggaac ctcggcgaag tgcgccccca 1920 tgggcggccg aagcccttcg acgccctggg gtgccgtcag ctcttcggtt tcacgtgaaa 1980 catgctgaag cgtggccacc ttcgctgcgg ccaccccacg ctcgttcggt agcagcggca 2040 tcgccccagg ggccgcagaa agccgcgctc cccaaggccg ccgaggcaac cgacttctcg 2100 gtcggggcgt tggggatcag tgcaccgagg ccacgaccca accccctccg tcgctcactc 2160 actgggtccc ctccaccatg ctcggatcgt tctgagcgcc gaagtgggcg tgggtcgcgt 2220 cataggtgga cgcccacacc cttcagcgcg atctcacggg ccgcctccag ataggagagg 2280 gctccacttg atcctggatc gtaggtcagt actgtctgcc cgtagctcgg agcctcggag 2340 atacggaccg agcggggaat gctcgtccgc aacacctcct cgccgaagtg gctgcgcacc 2400 tcgtcagcga cctgcgacgc gagccgcgtc cggccgtcgt acatggtgag gaggatcgtc 2460 gacacatgca gcgtggggtt gagatggccc cgcaccaggt cgacgttgcg cagcagctgc 2520 cccagccctt ccagggcgta gtactcgcac tggatgggga tcagcacctc ttggcccgcg 2580 acgagggcat tgacggtcag cagaccgagg gagggcgggc agtcgatgag gatgtagtcc 2640 agcggctgct cgtacgccgt gatcgctcgc tggaggcggc tctcgcgtgc gaccagcgag 2700 accagttcga tctccgcacc ggcgagatcg atcgtggcgg gcgcacagaa gagaccctcg 2760 acatcgggga ccggctggac cacttccgag agcggtcggc tctcgaccag cacgtcgtag 2820 atggaaggca catcggcgtg atgatcgatc cccagcgcgg tggaggcatt gccctgcggg 2880 tcgaggtcga cgaccaggac tctcgcaccg tgcagggcga gtgacgcggc aagattgacg 2940 gtcgtcgtcg tcttgcccac accgcccttc tggttcgcta cgaccatgac ccgggtctgc 3000 tcgggtcgcg gcagcccctc gccggcgcgg cccagagcct ccaccgccag ctgggcagca 3060 cgaccgatcg gcgtgtcgtc catcggaggc ggtgtttcac gtgaaacatc cgcccccatc 3120 gactcggtac ggggaccggg gaccggatcg gtcatcggtc ccgcgatatt ggcgtcggac 3180 cgcaaggatt cactctcctc gacttcaggc tcgcaatgaa cagagcctcc catgcctctg 3240 gggtcatgaa ccagtgaggc ctggtcttct gtggagaaat ccacctctgt ggacaactcc 3300 gtgccctccc cgagcgaccc tagaggcttc cggtcgcggg ggtcggccgc ggcgcggccg 3360 cggctgatga tgccgtgcag cagtgagcga cgtttcacgt gaaacacgat gcacagccgc 3420 tgatgccgaa ctgccgcgac actccggcat gcgtgagcag ggcagcttgt gtggagtacg 3480 gcctgggtgg agtacggccc gggtggagta cgactgacca tccgagcgaa gccggacgct 3540 atccgcggcg tcgacgcgtc cgaccggtcc gtgcggcctt ggcccgcttg gcggcgaagc 3600 gcacaccacc ggggctctcg cccacctcta ctcgcaccac ggtggacagg ggagacacga 3660 cgccctctcc gacgtggagg atggacgtct gctccgcacc gagtttgctc agcgccgcgg 3720 tcgccgcctt cagctcctcc tcggccgtgt cgcccttgag ggccagcatc tccccgtacg 3780 gacgcagcag agggatgccc caggtggcga ggcggtccag cggagctacg gcacgggccg 3840 tcaccacatg gaccggcggc agcttgccca tgacctcttc ggcccggccc cgcaccacgg 3900 tgacatggtc caggcccagc agctccacga cctcggtcag gaaattcgtg cggcgcagca 3960 acggctcgag aagggtgatc ttcaggtctt cccgcaccag cgccagcggg ataccgggca 4020 ggccggctcc cgagccgacg tcgcacaccg tcactccctc gggcacaacc tccgaaagca 4080 ccgcgcagtt cagcaggtgc cgctcccaga gccggggtac ttctcgcggg ccgatcagac 4140 cacgcttcac ccccgcctcg gcaagcagtt ccgcgtagcg gaccgcgtcc gcgtagcgat 4200 caccgaacac atcacgtgcc tgctcgggta caggggggag ctccgctgcc tccgacacgg 4260 ggaccgtcct tccgtatggc accggcgcac cgggcgccgg aaccagaacc accagaacta 4320 tcaggctgac aaaattcggc cccgcctgcg caacagacgg ggccggggaa cgagagaacc 4380 gatcaggcgg gaagcacgac gacgaagcgc tccggctcct cgccctcgga ctcgctgcgc 4440 agtcccgcgg ccttgaccgc gtcgtgcacg accttgcgct cgaagggcgt catcggcttc 4500 agctgcacgg actcgccgct gctcctgacc tcggccgcgg ccttggcacc cagctcggac 4560 agctcggcgc gcttgtcggc gcggtacccc gcgatgtcga gcatcaggcg gctgcggtca 4620 ccggtctcgc ggtgcacggc caggcgtgtg agctcctgca gagcctccag cacctcaccg 4680 tcccggccga ccagcttctc caggtccctg ctcttgctgt cgctgatgat cgagacggag 4740 gcacggtcgg cctcgacgtc catgtcgatg tcgccgtcga ggtcggcgat gtcgagcaga 4800 ccctccaggt agtccgcggc gatctcgccc tcctgctcaa ggcgagtgag ggtgtctgca 4860 ccctcggcag cggcggagat agtgccttcc gtcacgggat ggactccttc ttacttcttc 4920 gacggggact tgggccgctg cgggcccttg cgctgtccgg actgggcctt gctgcggcca 4980 ccgccgccgg acttctgagc cggcttcttg gcaccggcgg caggcttggc gtcctgcttg 5040 ccggccggtt cggcgtcctg cggctcgtcc gacttggtca gcgacgtctt cggctcggtc 5100 tcaccggcgg gcttggcctg gcgctgggac ttgctctgcc gcttgggctg ttggcgcttg 5160 ggctgagccg tggttgtcac ggtcgagccg tcctcgctct ggacggccac ggcggcgtcg 5220 ttcttcacca cgttgccgtc ggcctgggcg gccaggcccg ccttgttcag accgttgatg 5280 aacttgcgct cggcctcgtt gcggtcccgg cccttggcga cgatggcctt cacgatggcc 5340 ttctcgcccc ggcgacgggt cctgccgtgc tcggtgacgc tcttgtgcag ccgctccagg 5400 taggaggcct gcgccttgga gcccggcgtc gggttgttgc ggatgacgta catctgctgg 5460 cccatggtcc acacgttggt ggtcagccag tagacgagga caccgacggg gaagttgata 5520 ccgaagacgg cgaacatgac cgggaagacg tacatcagca tcttctgctg ctgcatgaac 5580 ggcgtcttca ccgaggtgtc gacgttcttg gtcatcagct ggcgctgggt gaagaactgc 5640 gacgcggaca tcagcacgat catgaccgcg gtgatgaccc ggacgtccgt cagcgaggca 5700 ccgagggatt ccaccttgga cgcgccgtcg gtgaacttcg cggccagcgg ggcaccgaag 5760 atgtgcgcct tctgggcgct ctccagcagg ggctggttga tcttgccgat ggtgtcgccg 5820 gacgcgatgc cgttgagcac gtggtacagg gcgaagaaga acggggactg cgccaggatg 5880 ggaaggcacg aggagagcgg gttggtaccc gtctccttgt acagcttcat catctcttcg 5940 gactgacgct gcttgtcgtt cttgtagcgc tcctggatct tcttcatctc cggctggagc 6000 gtctgcatcc cgcgcgtcgc cttgatctgc ttcacgaaga gcgggatcag gcagatgcgg 6060 atgaggatca ccagggacac gatggacagg ccccaggccc atccggtgtc aggtccgaag 6120 atcgccccgt acaccgtgtg gaactggacg atgacccagg agacgggcca ggtgataaag 6180 ctgaagaggc tggcaatcgt gtccactaat catgctcctt gggcatgggg cgaggtctct 6240 gcggccgggc tcgaaggatc ggacgagctc ggatgagcag gccttccttc ggtggccggt 6300 tcggcggcgg aggtcccgcc cttgcgtgcc cgccaggcgg cacgcagcat ttcgtgccac 6360 cgcggacgct tgcgcggcgg aacatggtcc acgccgccca gcgaccacgg attgcaccgc 6420 aggatgcgcc aagcggtgag tgccgtgccc ttgacggctc cgtgccggtc gatggccgtg 6480 tagccgtagt gggaacacga cgggtagtac ttgcacaccg gccccagcag cggactgatc 6540 gtccactggt agagcttgat cagagccagc agcgggtact tcatcgcgcg ccccctccca 6600 gtagccgcgc cagggcggcg tccaggtctc gggccagctg tgcatggtcg gcgtcacccg 6660 caccgggcag cgctcg 6676 // |
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