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EBI DbfetchID AF030367; SV 1; linear; genomic DNA; STD; PRO; 6798 BP. XX AC AF030367; XX DT 26-JAN-1998 (Rel. 54, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Streptococcus pneumoniae strain NCTC11906 alpha, 1-6-glucosidase (dexB) DE gene, partial cds; maturase-related protein, putative regulatory protein DE (cpsA), CpsB (cpsB), and putative chain length regulator (cpsC) genes, DE complete cds; and CpsD (cpsD) gene, partial cds. XX KW . XX OS Streptococcus pneumoniae OC Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus. XX RN [1] RP 1-6798 RX DOI; 10.1046/j.1365-2958.1998.00658.x RX PUBMED; 9466257. RA Coffey T.J., Enright M.C., Daniels M., Morona J.K., Morona R., RA Hryniewicz W., Paton J.C., Spratt B.G.; RT "Recombinational exchanges at the capsular polysaccharide biosynthetic RT locus lead to frequent serotype changes among natural isolates of RT Streptococcus pneumoniae"; RL Mol. Microbiol. 27(1):73-83(1998). XX RN [2] RP 1-6798 RA Coffey T.J., Daniels M., Spratt B.G.; RT ; RL Submitted (20-OCT-1997) to the EMBL/GenBank/DDBJ databases. RL The Wellcome Trust Centre for the Epidemiology of Infectious Disease, RL Department of Zoology, University of Oxford, South Parks Road, Oxford, RL Oxfordshire OX1 3PS, UK XX RN [3] RC Sequence update by submitter RP 1-6798 RA Coffey T.J., Daniels M., Spratt B.G.; RT ; RL Submitted (26-JUN-1998) to the EMBL/GenBank/DDBJ databases. RL The Wellcome Trust Centre for the Epidemiology of Infectious Disease, RL Department of Zoology, University of Oxford, South Parks Road, Oxford, RL Oxfordshire OX1 3PS, UK XX FH Key Location/Qualifiers FH FT source 1..6798 FT /organism="Streptococcus pneumoniae" FT /strain="NCTC11906" FT /serotype="19F" FT /mol_type="genomic DNA" FT /note="from National Collection of Type Cultures" FT /db_xref="taxon:1313" FT CDS <1..439 FT /codon_start=2 FT /transl_table=11 FT /gene="dexB" FT /product="alpha, 1-6-glucosidase" FT /db_xref="GOA:Q54796" FT /db_xref="HSSP:1UOK" FT /db_xref="InterPro:IPR006047" FT /db_xref="UniProtKB/Swiss-Prot:Q54796" FT /protein_id="AAC38714.1" FT /translation="DSIRVIGRDNARTPMQWDESKNAGFSTGQPWLAVNPNYEMINVQE FT ALANPDSIFYTYQKLVQIRKENSWLIRADFELLDTADKVFAYIRKDGDRRFLVVANLSN FT EEQDLTVEGKVKSVLIENTLAQEVFEKQILVPWDAFCVELL" FT CDS 1412..2689 FT /codon_start=1 FT /transl_table=11 FT /product="maturase-related protein" FT /note="similar to the maturase of group II introns" FT /db_xref="GOA:O52231" FT /db_xref="InterPro:IPR000477" FT /db_xref="UniProtKB/TrEMBL:O52231" FT /protein_id="AAC38715.1" FT /translation="MSKLLDKILSRENMLEAYNQVKSNKGSAGIDGMTIEEMDNYLRQN FT WRLTKELIKQRKYKPQPVLKVEIPKPDGGIRQLGIPTVMDRMIQQAIVQVMSPICEPHF FT SDTSYGFRPNRSCEKAIMKLLEYLNDGYEWIVDIDLEKFFDTVPQDRLMSLVHNIIEDG FT DTESLIRKYLHSGVIINGQRYKTLVGTPQGGNLSPLLSNIMLNELDKELEKRGLRFVRY FT ADDCVITVGSEAAAKRVMYSVSRFIEKRLGLKVNMTKTKITRPRELKYLGFGFWKSSDG FT WKSRPHQDSVRRFKLKLKKLTQRKWSIDLTRRIEQLNLSIRGWINYFSLGNMKSIVASI FT DERLRTRLRMIIWKQWKKKSRRLWGLLKLGVPKWIADKVSGWGDHYQLVAQKSVLKRAI FT SKPVLEKRGLVSCLDYYLERHALKVS" FT misc_feature 3689..4152 FT /note="indel" FT CDS 3774..5219 FT /codon_start=1 FT /transl_table=11 FT /gene="cpsA" FT /product="putative regulatory protein" FT /db_xref="GOA:O54604" FT /db_xref="InterPro:IPR004474" FT /db_xref="UniProtKB/TrEMBL:O54604" FT /protein_id="AAC38716.1" FT /translation="MSRRFKKSRSQKVKRSVNIVLLTIYLLLVCFLLFLIFKYNILAFR FT YLNLVVTALVLLVALVGLLLIIYKKAEKFTIFLLVFSILVSSVSLFAVQQFVGLTNRLN FT ATSNYSEYSISVAVLADSDIENVTQLTSVTAPTGTDNENIQKLLADIKSSQNTDLTVNQ FT SSSYLAAYKSLIAGETKAIVLNSVFENIIESEYPDYASKIKKIYTKGFTKKVEAPKTSK FT NQSFNIYVSGIDTYGPISSVSRSDVNILMTVNRDTKKILLTTTPRDAYVPIADGGNNQK FT DKLTHAGIYGVDSSIHTLENLYGVDINYYVRLNFTSFLKMIDLLGGVDVHNDQEFSALH FT GKFHFPVGNVHLDSEQALGFVRERYSLADGDRDRGRNQQKVIVAIIQKLTSTEVLKNYS FT SILQGLQDSLQTNMPIETMIDLVNTQLESGGNYKVNSQDLKGTGRMDLPSYAMPDSNLY FT VMEIDDSSLAVVKAAIQDVMEGR" FT CDS 5221..5952 FT /codon_start=1 FT /transl_table=11 FT /gene="cpsB" FT /product="CpsB" FT /db_xref="GOA:Q54518" FT /db_xref="InterPro:IPR004013" FT /db_xref="UniProtKB/Swiss-Prot:Q54518" FT /protein_id="AAC38717.1" FT /translation="MIDIHSHIVFDVDDGPKSREESKALLAESYRQGVRTIVSTSHRRK FT GMFETPEEKIAENFLQVREIAKEVADDLVIAYGAEIYYTLDALEKLEKKEIPTLNDSRY FT ALIEFSMHTSYRQIHTGLSNILMLGITPVIAHIERYDALENNEKRVRELIDMGCYTQIN FT SYHVSKPKFFGEKYKFMKKRARYFLERDLVHVVASDMHNLDSRPPYMQQAYDIIAKKYG FT AKKVKELFVDNPRKIIMDQLI" FT CDS 5961..6653 FT /codon_start=1 FT /transl_table=11 FT /gene="cpsC" FT /product="putative chain length regulator" FT /db_xref="GOA:Q54519" FT /db_xref="InterPro:IPR005701" FT /db_xref="UniProtKB/Swiss-Prot:Q54519" FT /protein_id="AAC38718.1" FT /translation="MKEQNTLEIDVLQLFRALWKRKLVILLVAIITSSVAFAYSTFVIK FT PEFTSMTRIYVVNRNQGEKSGLTNQDLQAGSSLVKDYREIILSQDVLEEVVSDLKLDLT FT PKDLANKIKVTVPVDTRIVSVSVSDRVPEEASRIANSLREVAAQKIISITRVSDVTTLE FT EARPATSPSSPNIKRSTLIGFLAGVIGTSVIVLILELLDTRVKRPKDIEDTLHMTLLGI FT VPNLNKLK" FT CDS 6663..>6798 FT /codon_start=1 FT /transl_table=11 FT /gene="cpsD" FT /product="CpsD" FT /db_xref="GOA:Q54520" FT /db_xref="InterPro:IPR005702" FT /db_xref="UniProtKB/Swiss-Prot:Q54520" FT /protein_id="AAC38719.1" FT /translation="MPTLEIAQKKLEFVKKAEEYYNALCTNIQLSGDKLKVISVTSVNP FT " XX SQ Sequence 6798 BP; 2166 A; 1167 C; 1455 G; 2010 T; 0 other; ggacagtatc cgtgttattg gacgtgacaa tgcccgtacc cctatgcaat gggatgagag 60 caaaaacgct ggtttctcaa caggtcaacc ttggttggcg gttaatccaa attacgagat 120 gatcaacgtc caagaagcgc tggcaaatcc agattctatt ttctatacct atcagaaact 180 ggtccaaatt cgcaaggaga atagctggct aattcgagct gactttgaat tgcttgatac 240 ggctgataag gtctttgctt atatacgtaa ggatggcgac cgtcgcttcc tagttgtggc 300 taacttgtcc aatgaagagc aagacttgac agtagaagga aaagtcaaat ctgtcttgat 360 tgaaaacacc ctagctcaag aagtctttga aaaacaaatc ttagttccat gggatgcttt 420 ctgtgtggaa ttactataaa tattttttgc agaaaaattt aaaattgaaa ccgtataaaa 480 ataagggagg actgtataaa agacagaaat cctttgtttt ttataaccaa ggtttataaa 540 ctttcattct cgaaattcaa ttaactttac aaattctcac tattaaggag aaagaagatg 600 aacataaaga agcgtgtcct tagtgcaggt ctgacttttg catctgcttt gcttttagct 660 gcttgcggcc aatcaggttc agatacaaaa acttactcat caacctttag tggaaatcca 720 actacattta actatctatt agactattac gctgataata tagtcaattg aaacaagaac 780 aagacaaaag agccttgtaa aaggtattgc aacttggtaa tacctttttg atgtacgacg 840 ggcatgtcgt atatctgagg tgtaagtcct cggtgggcac ctgctaccag tgaacccaat 900 agcgattccc aagcctgact atcgtgaggt agcagggaga ggaagggata gcgaaatcgt 960 ggctctacga acaggaacgt gatagtaagg cgtatatagc ggataagggg gcctcaaact 1020 ctaaagtcca aaaaggtagt cgtaacctat atgcgtaaat cacgagagta attgaattcg 1080 gactaagatt tcctattttc actgtaacct tttaacgtcc tcatatcttg tataaacgag 1140 gaaagatgta cgatttatcc cgtgaggtct catgagcgct gaaagcgtag taacaacgaa 1200 tcatgagaag tcagccgaac ccatagtagt gaggaaactt ctgtagtgga agtggagcga 1260 aggggtgagc aactaattga agtaatccta cttcacttgt gtctgtaaaa cgagaggtct 1320 gatagaactg gagtctgtca cgtattgact agatgaaggt tcaccaatat aagatgtcac 1380 tcaggcacca aaacaagaaa ggaatacgca catgtcaaaa ctgctagata agatattatc 1440 acgcgaaaat atgctggaag cctacaatca agtaaaatcc aataaaggct cagctgggat 1500 tgatggaatg actatcgaag agatggataa ttatctcaga caaaactggc gcttgactaa 1560 ggaactgata aaacagagaa aatataagcc tcaaccagtt cttaaagttg agatacctaa 1620 accagacgga ggcatccgtc aactaggaat tccaacagtt atggatagaa tgattcaaca 1680 ggccattgtc caagtcatga gccccatttg tgaaccccat ttctcagata cgagttatgg 1740 tttcagacca aataggtcat gtgaaaaagc catcatgaag ctcttagaat acttaaatga 1800 cggctatgag tggatagtgg atatagacct agagaaattt ttcgatacag ttcctcaaga 1860 tagattgatg tccttagtac ataacattat cgaagacgga gatacggaat ccttgattcg 1920 taagtatctt cattcaggtg ttatcattaa tggtcaacgt tataaaacac tagttggtac 1980 accacaggga ggaaatttat ctcctctctt atccaatatc atgcttaatg aattggacaa 2040 ggaattagaa aagaggggac ttcgatttgt gcgctacgca gatgattgtg tgattacggt 2100 cggaagcgag gcagccgcta agcgtgtgat gtattcagtc agtcgtttta ttgagaaacg 2160 gctaggtttg aaagtaaaca tgaccaagac taagattacc agaccaagag agttgaaata 2220 tctaggtttt gggttctgga aatcatcaga tggttggaaa agccgtccac atcaagatag 2280 tgttcggaga tttaagctta aattgaagaa actaacacag aggaaatgga gtatagacct 2340 aacaagacgt attgagcaac tgaatttgtc tattcgagga tggataaact atttctcatt 2400 gggaaatatg aaaagtatag tcgccagcat agatgagcgc ttgcgtactc gcctacgaat 2460 gattatctgg aagcaatgga agaagaaatc gagacgatta tggggattgc ttaagttagg 2520 agttcctaaa tggatagcag ataaggtatc tggctggggc gaccattatc aattagtagc 2580 tcagaagtcg gtacttaaac gtgctatatc aaaaccagtc ctggaaaaac gtggactggt 2640 ttcgtgtttg gattattacc ttgaacgaca tgcgttaaaa gttagttgaa ccgccgtatg 2700 ccgaacggca cgtacggtgg tgtgagaggg gctagagatt atcccctact cgatgtgctt 2760 tttgatatga gcccatgttt tctcaatagg attgtactca ggtgagtagg gaggaagagg 2820 taaaagttta cgcccaaact cttcacataa gagttctagc ttccccattc tatggaatct 2880 tgcattatcc ataatagtag gtgtggttct ttttttagag tgtagcccat agctttgagc 2940 gcatagtgga tggtagttgg atgacagcca aattcagaag ctatttcagt caaataagcg 3000 tctggattgt cagtaagata gtttttaagt ctatctctat caacttttct tggttttatt 3060 ccttttactt ggtggtttag ctctcctgtt ttctctttta gctttaacca gccataaatg 3120 gtattacgtg agatttggaa aacgtgtgat acttctgtta tactacctgt tcgctcacaa 3180 taagagagaa cttttttacg aaaatctatt gaatattcca taaaagatta taccacattg 3240 tgtactatat aaccgatggt gtggttaatg ttggtaagag aaacttctga aaccaagctt 3300 caaaaaagtc gctcgtcatc atctcttcgt aagtcattgg agcgattaac tcaccatttg 3360 ttagacctga aaccaaagaa atcctctgat atcttcttcc agatactttg cctcttctta 3420 actgaccttt taatgagcga ccatattctc gataaaaata agtatcgaat cctgtttcgt 3480 caatctaaac aggtgctagg tgctttaaac tattaaaatt cttaagaaat aaggctactt 3540 ttctgggtct tgttcataat tagattgaaa ctagagtagt agacctctgc ttctaaaaca 3600 ttgttagaaa tcgatttgac tgtcctgatc gattagtcat gttcttattt cattttacta 3660 tatttttgtt tcgcgggaag tctactaaga tacttaaaga tgcagatagt aaaaaagaca 3720 ttaccgtaaa aaagtgatat aatcgtatga tgttcaaggt ataggtgtta atcatgagta 3780 gacgttttaa aaaatcacgt tcacagaaag tgaagcgaag tgttaatatc gttttgctga 3840 ctatttattt attgttagtt tgttttttat tgttcttaat ctttaagtac aatatccttg 3900 cttttagata tcttaaccta gtggtaactg cgttagtcct actagttgcc ttggtagggc 3960 tactcttgat tatctataaa aaagctgaaa agtttactat ttttctgttg gtgttctcta 4020 tccttgtcag ctctgtgtcg ctctttgcag tacagcagtt tgttggactg accaatcgtt 4080 taaatgcgac ttctaattac tcagaatatt caatcagtgt cgctgtttta gcagatagtg 4140 atatcgaaaa tgttacgcaa ctgacgagtg tgacagcacc gactgggact gataatgaaa 4200 atattcaaaa actactagct gatattaagt caagtcagaa taccgatttg acggtcaacc 4260 agagttcgtc ttacttggca gcttacaaga gtttgattgc aggggagact aaggccattg 4320 tcctaaatag tgtctttgaa aacatcatcg agtcagagta tccagactac gcatcgaaga 4380 taaaaaagat ttataccaag ggattcacta aaaaagtaga agctcctaag acgtctaaga 4440 atcagtcttt caatatctat gttagtggaa ttgacaccta tggtcctatt agttcggtgt 4500 cgcgatcaga tgtcaatatc ctgatgactg tcaatcgaga taccaagaaa atcctcttga 4560 ccacaacgcc acgtgatgcc tatgtaccaa tcgcagatgg tggaaataat caaaaagata 4620 aattaaccca tgcaggcatt tatggagttg attcgtccat tcacacctta gaaaatctct 4680 atggagtgga tatcaattac tatgtgcgat tgaacttcac ttctttcttg aaaatgattg 4740 acttattggg aggggtagat gttcataatg atcaagagtt ttcagctcta catgggaagt 4800 tccatttccc agtagggaat gtccatctag actctgagca ggctctaggt tttgtacgtg 4860 aacgctactc actagccgat ggagaccgtg accgtggtcg caaccaacaa aaggtcattg 4920 tagcaattat tcagaagtta acttctacag aggttttgaa aaactatagt agtattcttc 4980 aaggattgca ggattctctt caaacaaata tgccgattga gactatgata gatttagtga 5040 atactcagtt ggaaagtggg gggaattata aagtaaattc tcaagattta aaagggacag 5100 gtcggatgga tcttccttct tatgcaatgc cagacagtaa cctctatgtg atggaaatag 5160 atgatagtag tttagctgta gttaaagcag ctatacagga tgtgatggag ggtagatgaa 5220 atgatagaca tccattcgca tatcgttttt gatgtagatg acggtcccaa gtcaagagag 5280 gaaagcaagg ctctcttggc agaatcctac aggcaggggg tgcgaaccat tgtctctacc 5340 tctcaccgtc gcaagggcat gtttgaaact ccggaagaga agatagcaga aaactttctt 5400 caggttcggg aaattgcaaa agaagtggca gatgatttag tcattgctta tggcgcagag 5460 atatactata ctctggatgc tctagaaaag ctagaaaaaa aagaaattcc tacccttaat 5520 gatagtcgtt atgccttgat tgagtttagc atgcatactt cctatcgtca gattcatacg 5580 ggattgagca atattttgat gttgggaatc acgccagtaa ttgctcatat tgaacgttat 5640 gatgctttag agaataacga aaaacgtgtt cgtgaactga ttgatatggg gtgctatact 5700 cagataaata gttatcatgt ttcaaaacct aagttctttg gtgaaaaata taaattcatg 5760 aaaaagagag ctcggtattt tttggaacgt gatttagttc atgtagttgc aagtgacatg 5820 cacaatttag acagtagacc tccatatatg caacaggcat atgatatcat tgctaagaaa 5880 tatggagcga aaaaagtaaa agaacttttt gtagataatc ccagaaaaat tataatggat 5940 caattaattt aggagaaaat atgaaggaac aaaacacttt ggaaatcgat gtattgcaac 6000 tattcagagc tttatggaaa agaaagttgg tcattttatt agtggcaatt ataacttctt 6060 cagttgcttt tgcctacagt acttttgtta tcaaacctga gtttactagt atgactcgga 6120 tttatgtagt taaccgtaat cagggagaga agtctggttt aaccaatcaa gacttgcagg 6180 caggatcatc cttggttaaa gactatcgtg aaattatcct atcgcaggat gttttggagg 6240 aagttgtttc tgatttgaaa ctagatttga cgccaaaaga tttggctaat aaaattaaag 6300 taacagtacc agttgatacc cgtattgtct ctgtttcagt tagtgatcga gttcctgaag 6360 aggcaagccg tatcgctaac tctttgagag aagtagctgc tcaaaaaatt atcagtatta 6420 ctcgtgtttc tgatgtgaca acactggagg aggcaagacc ggcgacatca ccgtcttcgc 6480 caaatattaa acgcagtaca ctaattggtt ttttggcagg agtgattgga actagtgtta 6540 tagttcttat tcttgaactt ttggacactc gtgtgaaacg tccgaaagat atcgaagata 6600 cactgcatat gacacttttg ggaattgtac caaacttgaa taagttgaaa taggagagag 6660 gaatgccgac attagaaata gcacaaaaaa aactggagtt cgttaagaag gcagaagaat 6720 attacaatgc cttgtgtaca aatatacagt tgagcggaga taaactaaaa gtaatttccg 6780 ttacttctgt taaccctg 6798 // |
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