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EBI DbfetchID AF012127; SV 1; linear; genomic DNA; STD; PRO; 4333 BP. XX AC AF012127; XX DT 02-JUL-1998 (Rel. 56, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 2) XX DE Thiobacillus intermedius K12 cbbR, ribulose bisphosphate DE carboxylase/oxygenase form II (cbbM) and putative Calvin cycle protein DE (cbbQ) genes, complete cds. XX KW . XX OS Thiomonas intermedia K12 OC Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas. XX RN [1] RP 1-4333 RA Shively J.M., Soyer F.; RT "A Form II RuBisCO Gene and Associated Genes in Thiobacillus intermedius"; RL Unpublished. XX RN [2] RP 1-4333 RA Shively J.M., Soyer F.; RT ; RL Submitted (01-JUL-1997) to the EMBL/GenBank/DDBJ databases. RL Biological Sciences, Clemson University, 132 Long Hall, Clemson, SC RL 29634-1903, USA XX DR RFAM; RF00005; tRNA. XX FH Key Location/Qualifiers FH FT source 1..4333 FT /organism="Thiomonas intermedia K12" FT /strain="K12" FT /mol_type="genomic DNA" FT /db_xref="taxon:75379" FT CDS complement(569..1492) FT /codon_start=1 FT /transl_table=11 FT /gene="cbbR" FT /product="unknown" FT /note="up regulator of cbbM; Calvin cycle regulator of the FT LysR family; potential regulator of other Calvin cycle FT genes" FT /db_xref="GOA:O84916" FT /db_xref="HSSP:1IXC" FT /db_xref="InterPro:IPR000847" FT /db_xref="InterPro:IPR005119" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:O84916" FT /protein_id="AAC24963.1" FT /translation="MIRITFRQLEILQAVADCGSFSRASEKLHLTQPAVSMQIKQLENL FT LDMPLFEHAGKKIRLTEAGNVALRSAGIVTRELNDLEQSLSNLKGLRGGVLTVSVASTA FT SVFAARLMALFRRQFPDVEVSLNVVNRETLLRHLTENVSDLALMGTPPEGYQLNAQPFM FT DNPLVIIAAPDHPLARKRAIPLKRLLEEPLVVREPASGTRNALENFIRERQLPFKPTME FT MNKNEAIKHAVEAGLGVGLVSLHTVQAELSSGQLSVLDVEGFPLKRQWFLVQRDGKRLS FT PAAQAFAELVLSKGPSIMAAAETKTG" FT CDS 1610..2995 FT /codon_start=1 FT /transl_table=11 FT /gene="cbbM" FT /product="ribulose bisphosphate carboxylase/oxygenase form FT II" FT /function="carbon dioxide fixation protein" FT /db_xref="GOA:O84917" FT /db_xref="InterPro:IPR000685" FT /db_xref="InterPro:IPR017443" FT /db_xref="InterPro:IPR017444" FT /db_xref="UniProtKB/Swiss-Prot:O84917" FT /protein_id="AAC24964.1" FT /translation="MAHDQSSRYANLDLKESDLIAGGKHILVAYKMKPKAGYDYLATAA FT HFAAESSTGTNVEVSTTDDFTKGVDALVYFIDEATEDMRIAYPIELFDRNVIDGRFMIV FT SFLTLVIGNNQGMGDVEYGKMIDFYVPERAIQMFDGPATDISNLWRILGRPIKDGGYIA FT GTIIKPKLGLRPEPFAQAAYQFWLGGDFIKNDEPQGNQVFAPVKKVIPLVYDAMKRAQD FT ETGEAKLFSMNITADDYHEMCARADFALEVFGPDADKLAFLVDGYVGGPGMVTTARRQY FT PNQYLHYHRAGHGAITSPSSKRGYTAFVLAKMSRLQGASGIHVGTMGYGKMEGEGDDRN FT IAYMIERDECQGPVYFQKWYGMKPTTPIISGGMNALRLPGFFENLGHGNVINTAGGGSY FT GHIDSPAAGAKSLRQAYECWKAGADPIEYAKEHKEFARAFESFPGDADKLFPGWRDKLG FT VHK" FT CDS 3074..3880 FT /codon_start=1 FT /transl_table=11 FT /gene="cbbQ" FT /product="putative Calvin cycle protein" FT /db_xref="GOA:O84918" FT /db_xref="InterPro:IPR011704" FT /db_xref="InterPro:IPR013615" FT /db_xref="UniProtKB/TrEMBL:O84918" FT /protein_id="AAC24965.1" FT /translation="MSIDAQQYRVQAEPYYQPQGREVALFEAAYRNRLPVMVKGPTGCG FT KSRFVEHMAWRLGKPLITVACNEDMTASDLVGRYLLEGGGTRWLDGPLTTAARIGAICY FT LDEIVEARQDTTVVIHPLTDHRRTLPLDKKGELIQAHPDFQLVISYNPGYQSLMKDLKQ FT STKQRFTAFDFDYPEAGLETTILCKESGLDAETAAKLVKIGHTARNLKGHGLDEGISTR FT LMVYAAQLIRDGVDAGDACRMALVRPITDDADIRQTLDHAIDVTFA" XX SQ Sequence 4333 BP; 868 A; 1295 C; 1305 G; 865 T; 0 other; ctgcaggaga tgcctgaaaa cgtgaaagcc aacctgagca tcatcccggt gaaatggatt 60 gatcaggtct tagacctggc gcttgagcgc gttcctgtgg cactggaaga cgaaattccc 120 gccaaggccg ttgaagtgtc agtcgcgcct gtggatacgc cggtttccga gactgcgcgt 180 cactgagcgg ttcaccataa gcacaacgaa atagcgcttg caacgacgga aaaaatcggt 240 atagaatgct ggtttgcttt cgggggtata gctcagctgg gagagcgctt gcatggcatg 300 caagaggtca gcggttcgat cccgcttacc tccaccaagt aaattcaagc aatatttgaa 360 ggtttagtcc ccttcgtcta gaggcctagg acaccgccct ttcacggcga taacacgagt 420 tcgaatctcg taggggacgc cagattcaac aaaccgaatc tgcatggagt ggtagttcag 480 ttggttagaa taccggcctg tcacgccggg ggtcgcgggt tcgagtcccg tccactccgc 540 caataaaatc aacgggttag cgatttcgct aacccgtttt tgtttctgcg gctgccatga 600 tgcttggccc tttgcttagc acgagttcgg cgaaggcttg ggcggcgggg ctgagtcgtt 660 tgccgtcgcg ttgcaccaga aaccactggc gcttgagcgg aaaaccttcg acgtcgagga 720 cgctcaactg gccagaggag agttccgcct gcaccgtgtg cagcgagacc aatcccacgc 780 ccagaccggc ttcgacggcg tgcttgatcg cctcgttctt gttcatttcc atggtcggct 840 tgaacggcaa ctgtcgctct cggatgaagt tctccagggc gttgcgggtg cctgatgcgg 900 gttcccgcac gaccaggggc tcttcgagca ggcgttttag ggggattgcg cgttttctgg 960 cgagcgggtg gtcgggggcg gcgatgatga ccagcgggtt gtccatgaag ggttgcgcgt 1020 tgagttgata cccctcgggc ggcgtgccca tcagcgcgag atcgctgacg ttctcggtca 1080 agtgacgcag cagggtttcg cggttgacga cattcaggct gacctcgacg tctggaaact 1140 ggcgtcgaaa cagcgccata aggcgagcgg caaatacgct ggccgtgctg gcgacagaca 1200 ccgtcagcac gccgcctctg agtcctttca agttggacag agactgttcg aggtcgttta 1260 gttcgcgggt gacgattccg gcgctgcgca gggcgacgtt gccagcttcg gtgagccgga 1320 tttttttgcc cgcatgctcg aacaggggca tatcgagcaa attctccaat tgtttgatct 1380 gcatcgaaac agcaggctgg gtgagatgta gcttttcgct ggcgcgcgaa aaactgccgc 1440 agtccgctac agcttggaga atttcgagtt gccggaaggt gattctgatc atcagtgaaa 1500 aattctctaa ctgcaaaaaa gtcttagttt accttatgaa ctaagcgatc ctatagttga 1560 tttttttcaa cccacccggc cgacaaaggc caacgcacag aggaacgaca tggctcacga 1620 tcaatccagc cgctacgcca atctcgatct caaggaatcg gatctgatcg ccggtggcaa 1680 gcacatcctt gttgcctaca aaatgaagcc caaagcgggc tatgactatc tggcgacggc 1740 ggcgcacttt gcggccgaat cgtccaccgg caccaatgtg gaagtcagca cgacggacga 1800 tttcaccaag ggggtcgatg ccctggttta tttcatcgat gaagccacgg aagacatgcg 1860 catcgcctat ccgatcgaac tgttcgatcg gaatgtgatc gacggccgct tcatgatcgt 1920 gtccttcctc acgctggtga tcggcaacaa ccagggcatg ggcgatgtcg agtacggcaa 1980 gatgatcgat ttctatgtgc ccgagcgcgc gatccagatg ttcgacggcc cggccaccga 2040 catctccaac ctgtggcgca ttctgggtcg gccgatcaag gacggcggct acatcgctgg 2100 caccatcatc aagcccaagt tgggtctgcg cccggagcca tttgcccagg cggcctatca 2160 gttctggctg gggggcgatt tcatcaagaa cgacgagccg cagggcaatc aggtattcgc 2220 cccggtgaaa aaggtgattc cgctggtcta tgacgccatg aaacgcgcgc aagacgagac 2280 tggcgaggcc aagctgttct ccatgaacat caccgcggac gactatcacg agatgtgcgc 2340 ccgcgcggac ttcgcgctgg aagtcttcgg tcccgatgct gacaagctgg ccttcctggt 2400 ggacggctat gtgggcggcc ccggcatggt caccaccgcg cgtcgccagt atccgaacca 2460 gtacttgcac tatcaccgtg cgggtcacgg cgccatcacc tcgcccagtt ccaagcgcgg 2520 ctacaccgcc tttgtgctgg ccaagatgag tcggctgcag ggggcttcgg gcattcacgt 2580 cggcaccatg ggctacggca agatggaagg cgagggcgac gaccgcaaca tcgcctacat 2640 gatcgagcgc gacgagtgcc aaggcccggt ctacttccag aagtggtacg gcatgaagcc 2700 caccaccccc atcatttccg gcggcatgaa cgcgctacgc ctgcccggct tcttcgagaa 2760 cctgggccac ggcaacgtga tcaacaccgc gggcggcggc tcctacggac acatcgactc 2820 gccggcagct ggcgccaagt cgctgcgcca ggcctatgag tgctggaagg ccggagccga 2880 tccgatcgag tacgccaagg agcacaaaga gttcgcgcgc gcattcgaat ccttcccggg 2940 cgatgccgac aagctcttcc cgggctggcg cgacaaactg ggcgtccaca agtaagccgc 3000 tcctgacgac atcgtttttg aaagtttcag cgcccccgct ttcacggggg cgtgttgttt 3060 tggaggtgga tgcatgagca ttgacgcgca gcagtaccgg gttcaagctg agccctatta 3120 ccagccgcag ggccgcgagg tggccttgtt tgaggccgcc taccgtaatc gtttgccggt 3180 catggtcaag gggccgacgg gatgcggcaa atcgcgtttt gtcgagcaca tggcgtggcg 3240 gctgggcaag ccgctcatca ccgtggcctg caacgaagac atgacggcga gcgatctggt 3300 cggacgttat ctgctcgaag gcggcggcac gcgctggctc gatgggccgc tgaccaccgc 3360 cgcgcgcatc ggcgcgatct gctacctcga cgaaattgtc gaggcgcgtc aggacaccac 3420 cgtggtcatc cacccgctga ccgaccaccg ccgcaccctg ccgctcgaca agaagggcga 3480 gctgattcag gcgcatcccg attttcagtt ggtgatttcg tataacccgg gctatcagtc 3540 gctgatgaag gatctgaagc agtccaccaa acagcgcttc accgccttcg atttcgacta 3600 ccccgaggcc gggctcgaaa ccaccattct gtgcaaggaa agcggcctcg acgccgagac 3660 ggccgccaag ctggtgaaaa tcggccacac cgcgcgcaac ctcaaggggc acggtctcga 3720 cgagggcatt tccacacgcc tgatggtgta cgccgcgcag ttgatccgcg acggcgttga 3780 tgcaggagac gcctgccgca tggcgctggt gcgccccatc accgacgatg ccgacattcg 3840 ccagacgctc gatcacgcca tcgacgtgac cttcgcctaa gagggtgcga acaaatccgc 3900 catgtccgtt cctcgcgccc aaaccctccc actctgcgtt gcaaatgctc gccgtgccga 3960 cgggcacggc tgtgctttgc gccttgatcg gaagcgtttg ggcacgctgc tcggccacgc 4020 cggattcatt cacaccctct gtgcggcaaa ccaagccgaa tcatggtgag tgacgccctg 4080 atggacgatt cgatacgcgc cagttgggcg cggctcgaca cgcgctttcc tctcgtggag 4140 gccatctttc cggcctgcat ggccgatgcc cagagcgtgc tcacgcccga tggactgagc 4200 gccttcctcg aagcgggccg catcatcggc aaactggggc gcggggccga acctttgctg 4260 gcctttctgg aagcctggcc gtccaccgtc cgcgccgtgg gtgaagacct gctggcgccc 4320 gttgatggcc ctt 4333 // |
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