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EBI DbfetchID AF005382; SV 1; linear; genomic DNA; STD; PRO; 2576 BP. XX AC AF005382; XX DT 27-NOV-1997 (Rel. 53, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Caldicellulosiruptor saccharolyticus putative xylose repressor (XylR) gene, DE partial cds, and xylanase (XynI) gene, complete cds. XX KW . XX OS Caldicellulosiruptor saccharolyticus OC Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; OC Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor. XX RN [1] RP 1-2576 RA Te'o V.S.Jr., Gibbs M.D., Saul D.J., Bergquist P.L.; RT "A cluster of genes involved in xylan degradation cloned from the extreme RT thermophile Caldicellulosiruptor saccharolyticus"; RL Appl. Environ. Microbiol. 0:0-0(1997). XX RN [2] RP 1-2576 RA Te'o V.S.Jr., Gibbs M.D., Saul D.J., Bergquist P.L.; RT ; RL Submitted (27-MAY-1997) to the EMBL/GenBank/DDBJ databases. RL School of Biological Sciences, Macquarie University, Balaclava Road, RL Sydney, NSW 2109, Australia XX FH Key Location/Qualifiers FH FT source 1..2576 FT /organism="Caldicellulosiruptor saccharolyticus" FT /mol_type="genomic DNA" FT /db_xref="taxon:44001" FT CDS <1..229 FT /codon_start=2 FT /transl_table=11 FT /gene="XylR" FT /product="putative xylose repressor" FT /db_xref="UniProtKB/TrEMBL:O30420" FT /protein_id="AAB87378.1" FT /translation="KLVNIFNPDIVIIGNKASFMGDLFLEELRRIVFKRSFITQYHHVR FT VEISKLKDRACVLGCVAMVISDMLAFPDYV" FT CDS 260..2332 FT /codon_start=1 FT /transl_table=11 FT /gene="XynI" FT /product="xylanase" FT /note="endoxylanase" FT /db_xref="GOA:O30421" FT /db_xref="HSSP:1HIZ" FT /db_xref="InterPro:IPR001000" FT /db_xref="InterPro:IPR003305" FT /db_xref="InterPro:IPR008979" FT /db_xref="InterPro:IPR013781" FT /db_xref="InterPro:IPR017853" FT /db_xref="UniProtKB/TrEMBL:O30421" FT /protein_id="AAB87379.1" FT /translation="MVVRRLKSRKLGFILALLFVISSIVPLKFITYSSAEQASSKKKYI FT EYNFEGKSVSPLVKYPSSVTLKITNSARAEGLYSVLVSGRKNVSDGVVVDITKLLDFSR FT EYEISFYAMQATKKLQRISATLEILDSSGKNQLIVAEKVLLPNIWTKVSGKIQAYNYKK FT AKKINLIVNMPTSKSDSFYIDLLVIKDLENAYVLKQENFENKNTGGFLPEDKNCKIALT FT KDKAYSSTYSLKVPAILKRARMERFLFPIKGLLQKGRTYDFSVLVYQNSSKPVSFLAGI FT KINDGKSTKEIVLTKQSVTPKKWAELFATLDLDTKFSAKDVSFFVKPAVAIPYYIDLYS FT ISDENWGQPIPDYNLPSLCEKYKNYFKIGVAVPYRALTNPVDVEVIKRHFNSITPENEM FT KPESLQPYEGSFDFNIADEYIDFCKKNNISLRGHTLVWHQQTPSWFFTNPETGEKLTNS FT EKDRKILLDRLKKHIQTVVGRYKGKVYAWDVVNEAIDENQPDGYREATGTISLGPRVHW FT KAFIWAHEADPKAKLFYNDYSTGNPYKREFIYKLIKNLKAKGVPIHGVGLQCHISLDWP FT DVSEIEETIKLFSKIPGLEIHFTAIDISIAKNMIEGDDAYTRYLLIGQAKKLKAIFDVL FT KKYKNVVTGVTFWGLKDDYSWLKGDLPLLFDKDYQPKFAFWSLIDPSVVPPKLKN" XX SQ Sequence 2576 BP; 918 A; 386 C; 517 G; 755 T; 0 other; caaattggtc aatatattta acccagatat agttataata ggtaataagg cttcatttat 60 gggtgacttg tttttagaag aactgaggag aattgtcttc aaaaggtcat ttattacaca 120 ataccatcat gtgagggttg aaatttcaaa gctaaaagac agagcttgcg ttttaggttg 180 tgttgcaatg gtgatttctg atatgcttgc attccctgat tatgtttaaa aagcaaactt 240 taaaaaaagg agtgtttata tggtagttag aaggttaaaa agtcgaaagt taggttttat 300 tcttgctttg ttgtttgtaa taagtagtat tgtaccttta aaatttataa cttattcatc 360 tgcagaacag gcaagttcaa aaaagaaata cattgagtac aactttgaag gcaaaagtgt 420 gtctccatta gtgaaatatc cttccagtgt aactttaaag attacaaatt ctgctcgtgc 480 agaaggtctt tattcagtac tagtatcagg gagaaaaaat gtaagtgatg gagttgtagt 540 tgatattaca aaacttttag acttctcaag agagtatgaa atttcttttt atgcaatgca 600 ggctacaaaa aagcttcaaa gaatttctgc aaccttagag attttagatt caagtggtaa 660 aaaccaactt attgttgctg aaaaggtgtt attgccaaac atatggacaa aggtaagtgg 720 aaaaatccag gcctataatt ataagaaggc taagaaaatt aatttgattg ttaatatgcc 780 aacaagcaaa agcgattctt tttacattga cctgcttgta ataaaggatt tagaaaacgc 840 ttatgttctc aaacaggaga attttgagaa caaaaatact ggcggctttt tgcccgaaga 900 taaaaactgc aagatagcac tcacaaaaga caaagcttat agcagcactt acagcctaaa 960 ggttccagcc atcctcaaaa gagcaagaat ggaaagattc ctctttccaa taaaaggatt 1020 gctccagaaa ggtagaacat atgatttttc agtgcttgtt taccaaaaca gttcaaaacc 1080 tgttagcttc ttagcaggga taaaaataaa cgatggaaag tcgacaaaag agattgtttt 1140 gacaaaacag agcgtcacac ctaaaaagtg ggcagaacta tttgcaactc ttgaccttga 1200 taccaagttt tctgcaaaag atgttagctt ttttgtaaag ccagcagttg cgatacctta 1260 ttatatagac ctttattcaa tctcagatga aaattggggg cagcctatac cagattataa 1320 tctaccctca ctttgtgaaa agtacaaaaa ctatttcaag attggagttg ctgtgccgta 1380 tagggctttg acaaatccag ttgatgtaga agtgataaaa agacatttta acagcataac 1440 accagaaaat gagatgaaac cagaaagcct tcaaccttat gaaggtagtt ttgatttcaa 1500 cattgcagat gaatatatag atttttgcaa gaagaataat atctcgttac gggggcacac 1560 tcttgtttgg catcagcaaa ctccaagctg gttttttaca aatcctgaaa caggtgaaaa 1620 actgacaaat agtgaaaaag acagaaagat actcttagac aggttaaaga agcatatcca 1680 aacggttgtt ggaagatata aagggaaagt ttatgcatgg gatgtggtaa atgaggcaat 1740 tgatgagaat cagccagatg gatatagaga agcgactggt acaatatcct tagggcccag 1800 agtacattgg aaggcattta tctgggcaca tgaagcagac ccgaaagcaa agctttttta 1860 caatgactat agtacaggaa atccatataa gagagagttt atatacaaac ttattaaaaa 1920 tctgaaagca aaaggtgtgc caattcatgg agtagggctt cagtgccata tttcacttga 1980 ctggccggat gtaagtgaaa ttgaggagac cataaagctt tttagcaaga ttccggggct 2040 tgagatacat tttacagcaa ttgatataag tattgcaaag aatatgatag agggtgatga 2100 tgcgtatacc cgttaccttc taattggaca agccaaaaaa ttaaaggcaa tttttgatgt 2160 tttaaagaag tacaaaaatg tagttacagg tgttaccttc tgggggttaa aagatgatta 2220 ctcatggcta aaaggcgatt tgccactttt atttgacaaa gactatcagc caaagtttgc 2280 gttctggagc ttgattgacc catcagttgt gccaccaaaa ttaaaaaact aattattgac 2340 taaaatttca aaacttcata taataaaaat taaaaaaaaa agtgaatatc caggcgatgg 2400 agttcgcctt aaattgccac aacaatgaaa aatgccttgt ggctgattac tcctgtccgt 2460 ataaaggtgc gggcaggagt ttttggtttt atatgctctt atttctgagt atctgggggg 2520 gatggacttt ggatattgtg tatttcgcaa atgataaaaa acttcaaaaa aaataa 2576 // |
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