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EBI DbfetchID AB455224; SV 1; linear; genomic DNA; STD; PLN; 5887 BP. XX AC AB455224; XX DT 17-DEC-2008 (Rel. 98, Created) DT 17-DEC-2008 (Rel. 98, Last updated, Version 1) XX DE Volvox carteri f. nagariensis invC gene for InvC, complete cds. XX KW . XX OS Volvox carteri f. nagariensis OC Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; OC Volvocaceae; Volvox. XX RN [1] RP 1-5887 RA Ueki N., Nishii I.; RT ; RL Submitted (25-AUG-2008) to the EMBL/GenBank/DDBJ databases. RL Contact:Noriko Ueki RIKEN, Advanced Science Institute; 2-1 Hirosawa, RL Wako-shi, Saitama 351-0198, Japan XX RN [2] RC Publication_Status: Available-Online RX DOI; 10.1534/genetics.108.094672 RX PUBMED; 18791222. RA Ueki N., Nishii I.; RT "Idaten is a new cold-inducible transposon of Volvox carteri that can be RT used for tagging developmentally important genes"; RL Genetics 180(3):1343-1353(2008). XX FH Key Location/Qualifiers FH FT source 1..5887 FT /organism="Volvox carteri f. nagariensis" FT /mol_type="genomic DNA" FT /sex="female" FT /note="forma: nagariensis" FT /db_xref="taxon:3068" FT 5'UTR 1661..1688 FT CDS join(1689..1708,1778..1879,1956..2082,2200..2533, FT 2857..2956,3163..3234,3492..3711,4034..4264) FT /codon_start=1 FT /transl_table=1 FT /gene="invC" FT /product="InvC" FT /note="The intron-exon boundary sequence for the third FT intron (2083..2199) is not gt---ag but gc---ag that is FT often seen in some genes of volvocine algae." FT /note="jgi/Volca1/scaffold_1:2571145-2577031" FT /db_xref="UniProtKB/TrEMBL:B6ZKF6" FT /protein_id="BAH03159.1" FT /translation="MSGIPPQLRLHRVWWTRKSSSIPVTMFTTATLDRLDMLDTQCRNY FT RGGPHVAAVYLPLVQAANKSGLTNENEQAVRTAEEKLQELFYRMEATTEACHMHILFLY FT EVTSDSALAYLTPINALRNAALLASQTQLVMMIDVDLCVSNTLVQFVSESKYIDQLVRM FT SSNSFWVLPAWDVNKQLPQEQINEVAASAASGTKMQLVKLWLNGSLNWFGQHYFQLGHS FT PTNYTRWLMSRRSYVIDYSIGYEPWGLVSRDRMAIVPYDARFRGCYNDKIAHVVSLHHS FT GLLFKALPNAWVVHRPHALNPAAAIAKAVVGSSLSQHGVGALQEVVHMHGKNASKFEHH FT KDWSHVLLDDSVVRMLANRYRPFPGKQYTYCRRTLPWFATKTTQATVATTTTTQRRDEE FT VT" FT 3'UTR 4265..5410 FT polyA_signal 4793..4798 XX SQ Sequence 5887 BP; 1351 A; 1502 C; 1625 G; 1409 T; 0 other; ctcgagggca gtcatgaccg gatctttgag gtcatccagg tccatgtcca gccttctgca 60 cagggcccgc aagcagcccc acccgacaca ccaagcgtta cattcacaca actgaactgt 120 ccgataatgg tcgataatgg gcttgtgccg ttgggttttt tttgaagtga aatggagaag 180 cgccaggatg gatacttttc ttggcaaacc tcctgccccc gtaggcgcga gagtgcgctg 240 gacccgcgct gtggggcccc aaccccaccc caccccaccc caccgatggg gtttggggtc 300 tcttataata ttttcccaaa gtggccggat ggctccagga ccatgacatg cacgagtttg 360 ccggcgtaac gggaaaaccc atcgcgatta gcaacaacaa atccagctcc acttacacac 420 agccagacaa ggtgcatcgc aaacgcatta cggctggctg catctcattt cgcctcacta 480 tcatggacgc agagcggtaa tcgaaagact ggtaggggcg agtttggcgg tgtagatgaa 540 gtagggtgca gctaatggct aattgcggga aatcacggga accaccaggg atatggaagc 600 gcagacacaa gaacgctcta tgtaggcgat attaccgaaa agacgggcac gaaacaggta 660 ggcttgacgt gggcagcgtc ccctcgatta cgacaaacat atttacatgt atgtttttaa 720 aaaaaaaaca tgtatgtata catacatata tatacataca tatgtacgca tgcatgtgca 780 caccgcacct ctccaaacgc acatagctgc atagctccag ccgtactcgg ggtaagttgg 840 ggagtcatgc tggagcttga agtctctatc cacacaccag ctgctggctg ggaggtgctc 900 tgcggtccat gcgctggatc ggatttggtc acaatttgcc cgcaaataca aagccctgca 960 caagacgtcg cgtacacaga catggacaaa aactgaaatg tgaagtcttt ttttgtactt 1020 atcttactat ctttacttta tcagatttga agtaagcaac aacaagcaaa actgtatccc 1080 gcagtagtgc tgctgtaatg tgtccgctgc gtttccccta ggacgcggtc taaacagggt 1140 ccaagtttga ccatcccaag tgccatcgca cgggatatcc tgatacccca ggcgctcagc 1200 tgatcaaagt ttttggcagg gggataatgc tgaattgagg ctggccatgt gggtcttatg 1260 ccacgaggac agaccgacgg acaggcaggt ggaaaaattg ggatatcact actgcatcgt 1320 gaaggtcaag catagtttct atgcgaaaaa acaatgtttt ttaggattta gaggtgatta 1380 cggccattcg ggacagcgca agccatggat ggaaaggttg cgcgggcact agtacggaaa 1440 ccaaccgtca ttttgaggga ggtgatcttg gttggctggg tacaggtgca atataacatg 1500 taaagcgtag gatgttatat ccgctgcgag cgtacctcgt ttttgctgta actgtagtta 1560 ccatcagact tgatacctac aggacagccc gggctgcaag tatagatgaa tcaacgagga 1620 atacaggcct tcttgatgga tgtttcaata agtactacga cgcaacaccc actacgttcg 1680 aatcatttat gtccggcatt ccgcctcagt gagtcttctc tcgcgtgaca cgggaatact 1740 ctgcgttcct taacccatct ctttcaaacg gtgctaggct gcggctccat cgcgtatggt 1800 ggacacggaa gagctccagc atccctgtca caatgttcac aacagcaacg ttagaccgct 1860 tggacatgct ggatacacag tgggtcaatc tttggagctc gccaaggtgc gaaacaaatg 1920 cactaaacaa accggcaggg ggcgtcggta cgcaggtgtc gcaattaccg gggcggccct 1980 catgtggctg ctgtttatct gccgctggtg caagcagcca acaaaagcgg cttaacaaac 2040 gaaaacgagc aggctgtcag aacggctgag gaaaaactgc aggcaagcgt cgcatctcgc 2100 gacctgcgga accccgctgg tcgatgtcag tagacttgac taatccaaga actcacacca 2160 taagcaaatt ccatctcacc atatttcccc tttctccagg agctgttcta caggatggag 2220 gcgacgacgg aagcgtgcca catgcacatc ctgttcctgt acgaagttac gagcgattct 2280 gcacttgcgt accttacccc catcaatgcg ctccgtaacg ctgcgctgct ggccagtcag 2340 acgcagctcg tcatgatgat tgacgtggac ctctgcgtca gcaacacgct cgtccagttc 2400 gtctccgaat ctaaatacat agatcagctt gtccgcatgt caagcaacag cttttgggtg 2460 ctgccggcgt gggacgtcaa caagcagctc ccccaggagc aaataaatga ggtggcggcg 2520 tccgctgcgt caggtactac tgcctccctt tcgccacctt acacaccctc atgctcagga 2580 ttggatgaca tatggatagc gacccattta accccttatg ggctatgaac agctcaactc 2640 agaacggatt tctactactg ctgttactgc tgctgttact gctactactg ctgctgctac 2700 tgctactgct gctgctactg ttgctgttac tgcggctgtt actgctgctg gtagttgcta 2760 ctgctgctgc tactgctact aatgatgatg ctactgctac tgctgatgtt agttaacttg 2820 cctgcgtttg cgttttcacg aataccttaa tcgtaggcac caagatgcag cttgtgaaat 2880 tgtggttgaa tggaagttta aactggtttg ggcagcacta tttccagctt ggccactcgc 2940 caacaaacta tacacggtga gttcaaaaga ggcgcacaga gagactaact gccttaccgg 3000 cgtttagggg gccctttgct aaaccagtac tactgccata gctgggacct caatctggct 3060 gacccacatg gacgcgtttg acatccatcc gcacggccgg ttgacccacg tggccccctc 3120 tcggcgtacg cacccaccca ccgcccaatc ccccaatccc aggtggctga tgtcccgcag 3180 gtcctacgtc atagactaca gcatcggcta cgagccgtgg gggctggtgt ctaggtgcgt 3240 atgtatgtat gcatgtgagt aggtaggtag gtaagtaggc aagtaggtag gtaggtaggt 3300 aggtaggtat agaacagggt tgcgtgagag gggccaggtc acaggggaag agagggagaa 3360 agagggagag ggagtctggg ttggccattc gccagtgcag cacgtccatg cttccgttgg 3420 gcgctctgca ttgagatgtg gatttctacc tacccttgtt ccgggccgcc cgtgcctcct 3480 gcacgccgca gggatcggat ggctatcgta ccgtacgacg cgaggtttcg gggctgttac 3540 aacgacaaaa tcgcgcatgt ggtgtcactg catcattccg gcctattgtt caaggcgcta 3600 cctaacgcct gggtagtgca ccgcccccac gcactcaacc ccgcggcggc tatcgccaag 3660 gcggtggtgg ggagctcctt gtcccagcac ggagtcggag ccctccagga ggtgaggcgc 3720 aagggggggg ctgtgtgtgc gtggtctgcc gggtatggtg cgacgcagta gtggtatgat 3780 agtcgggggg aaggggctcg gggttgtcgg ggttgtcctc cgtatgtgtg gggcctgaat 3840 tggagccttt tgttgaggcg gtcctgatgc tcttttcttg gtgctgtggc tgatgtgagg 3900 gtgggggtgt cagagggggc cctaagggtg ttaaggaaac cggcaaatgc cctctgttga 3960 tgtcttgtgt tcatgacgcg ccttttctgc gcgcgtgtgc tttcgcttgt gtttgtgcgt 4020 gtggtcgctg caggttgtac atatgcacgg caagaatgcg agtaagtttg agcaccacaa 4080 ggactggtcc cacgtgctcc tagatgactc cgtcgtaagg atgctggcca atcgctaccg 4140 gccttttccc ggcaagcagt acacgtactg ccgccgtacg ttgccgtggt tcgcgaccaa 4200 gaccacccaa gcgactgtcg caacgacgac aacgacgcaa cgtagagacg aggaggtcac 4260 ataacgaaac ggtgacggag ctggtgatgg tgaaaaggtt cctgctctca gtctgattcg 4320 caatttcctc ctattctcaa ggcttattcg ctctctcctc aatttggttg cgccgacctt 4380 ataagcctat gctagtggca ccgctgcgct cctgcgttgc tgcattagct cttgtgtctg 4440 ggtcattagc actgggttct attgctccgg cagtgtggta actccctgtg gccgggggaa 4500 actaacctcg tccccatgtg tgccatgcat ggcactgtgg gtgccgtact tatgcgataa 4560 gcagcggata agtaagagag cgttcgagag agaagagcgt acggaaggga gcggggtacg 4620 acggtaaaat tgtgggtgta gggcaggttg gacggaggcg tcagtgtggt gaacagccat 4680 agcagcaaac atggaaagca gcacagaaat ttctgtgcaa cagccgcatc agcatcagtg 4740 aacgagtgag taaagcgagc gtggaacgaa gtgacgagtg cacaatagac acaataaacc 4800 catttaagag ctgcgagata gccaccatcg taattggcct cagctatgaa gctaatgaag 4860 gttccgggtt cgattcctgg tcagaccccc gacactgttc gggaggtcta ggtttactaa 4920 cgctgctgag gtgtggagat gaggtctagt tgatggactg agtctcgcat ggtggtgatg 4980 gctgatctgt ctctacggat gtcgggtgac tggatgagga ggggtctagt tggcaggacc 5040 caaaccaccg tcggttgtac ggtgtactca actatcaata tatatagtcc atggcccccc 5100 tcaggctttg acggaaaccc cccgcactcg tgcggcactt gtaacttata acttgaagct 5160 aacggttatc gggctagact gcttggttga agggcttggc tgacccatgg gtcacccagg 5220 gggatatctg ccgtgggccg ttgtccgcat gtccatggac atacgataac acaatacaca 5280 atacacgaag catgactttt tgcatattac tcttcgctat gcgtttttcc gtatgcgatt 5340 tttcctctta agacgcatag cagcggaagc agtagcggtg gcagtgatga gaatgtaaga 5400 cagaagcttg aagtccatct ctttcgtgcc cgcgcacaag aagcaatccc tactccctgt 5460 catgtgcgtt aggttgggtc accctgcccg caacagtgcc tgcggtgtgg caccacggca 5520 tttcgtgtac acatgcattc acgtgagtct gtgtgcatgt ccatgtcctt gtttcctgaa 5580 cgaatattgt atagcagtgg atgatactcg taacctcctc atcctctctg taattcaagt 5640 gtcgtcgcct gctctgcaaa cgcgggaaat ccagctttaa ttaaatgcag ccagctgagt 5700 tcctcttagc ttgttccttc gcacttgttt ctcgtctacg tgacagggag ctcttgcgcg 5760 ctgctggctt tcctctgtct gcgcagcgtg cacagatgtg gatgcagatt agccatgtgc 5820 acagctgcgc tatggctacg cagctgcaac catcacgcac atggcattgc gacgtttcgt 5880 tctcgag 5887 // |
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