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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AB361565; SV 1; linear; mRNA; STD; INV; 1401 BP.
XX
AC   AB361565;
XX
DT   13-JUN-2008 (Rel. 96, Created)
DT   13-JUN-2008 (Rel. 96, Last updated, Version 1)
XX
DE   Caenorhabditis elegans Chnase mRNA for chondroitin hydrolase, complete cds.
XX
KW   .
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis.
XX
RN   [1]
RP   1-1401
RA   Yamada S., Kaneiwa T., Mizumoto S., Sugahara K.;
RT   ;
RL   Submitted (18-SEP-2007) to the EMBL/GenBank/DDBJ databases.
RL   Contact:Shuhei Yamada Hokkaido University, Graduate School of Life Science;
RL   Kita 21, Nishi 11, Kita-ku, Sapporo, Hokkaido 001-0021, Japan URL   
RL   :http://www.lfsci.hokudai.ac.jp/labs/infmem/
XX
RN   [2]
RX   DOI; 10.1074/jbc.M709236200
RX   PUBMED; 18390555.
RA   Kaneiwa T., Yamada S., Mizumoto S., Montano A.M., Mitani S., Sugahara K.;
RT   "Identification of a novel chondroitin hydrolase in Caenorhabditis
RT   elegans";
RL   J. Biol. Chem. 283(22):14971-14979(2008).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1401
FT                   /organism="Caenorhabditis elegans"
FT                   /mol_type="mRNA"
FT                   /db_xref="taxon:6239"
FT   CDS             5..1381
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="Chnase"
FT                   /product="chondroitin hydrolase"
FT                   /db_xref="GOA:Q22675"
FT                   /db_xref="HSSP:1FCQ"
FT                   /db_xref="InterPro:IPR013032"
FT                   /db_xref="UniProtKB/TrEMBL:Q22675"
FT                   /protein_id="BAG48551.1"
FT                   /translation="MVIVWYHQLLLVLLIFIGAAKGAQYIGSGASQPNRTDVVWMVPSW
FT                   TCKNEYSIDVEKYGILQNEDQHFVGGKQFAIFYEHSFGKIPYFKAQNESDPKNGGLPQM
FT                   GDLEAHLIQAEKDINETIPDENFNGIAVIDIEEFRPMWELSWGPFSVYKTESIRLTRQQ
FT                   HPYWSTKQIEWQAERDYEKACQKFFIETLRLGKRLRPNAKWGYYLFPKCNGDVGQKSDT
FT                   DCSTLFQKFNDNLHWLWGESTALFPSIYLYPSQKQNPEYNFVNSGALITETKRIKRNYC
FT                   PSCEIHVFTKIEYNPYYTPDDFYSKQNLASTLDLAIKMNANSVVIWSTSQSIGSRCGSL
FT                   QTYVDNTLGPYLQLTDRNLDKCRMERCEGRGECYLPRPKTNPAIYNFACRCERPYFGKS
FT                   CEYRGRRMGVSMPKASQTPQVIPDVTAYFSTSSNGTKKYNAPNQFYSRTGGDIKLARKL
FT                   "
XX
SQ   Sequence 1401 BP; 462 A; 265 C; 287 G; 387 T; 0 other;
     taagatggtc attgtgtggt accatcaact actgctagta cttctgatat ttataggagc        60
     tgccaaagga gctcagtaca taggttcggg agcctcccaa cccaaccgaa cggatgttgt       120
     gtggatggtt ccctcttgga catgtaaaaa tgaatattca attgatgtag aaaagtatgg       180
     aattctgcaa aatgaggatc agcattttgt tggtggaaaa cagtttgcaa ttttttatga       240
     gcacagtttt ggaaagattc catacttcaa ggctcagaat gaaagtgatc caaagaacgg       300
     agggctaccc cagatggggg atctcgaagc tcacttgatt caggctgaaa aggatatcaa       360
     tgaaactatt ccagatgaga atttcaacgg aattgctgtc attgacattg aggagttcag       420
     acctatgtgg gagctcagtt ggggtccatt ttcggtctac aaaactgaat caattcgtct       480
     cacccgtcag caacatccct attggtcaac aaaacaaatt gaatggcaag ctgaaagaga       540
     ttatgagaaa gcttgtcaaa agttttttat cgagactctt cgacttggaa aacgtcttcg       600
     accaaatgca aaatggggat attatttgtt tccaaaatgc aatggagatg ttggacaaaa       660
     gtcggacact gattgttcta cattatttca aaagtttaac gataatctac actggctatg       720
     gggagaaagt accgctctat tcccatcaat ttacctgtat ccttctcaaa agcaaaaccc       780
     ggaatataat tttgtcaatt caggagcttt aataacagaa acaaaacgga taaaaagaaa       840
     ctattgccca agttgtgaga tacatgtttt tacaaaaatt gaatataatc catattatac       900
     accagatgat ttctattcca agcaaaatct tgccagcaca ttggatcttg ccataaaaat       960
     gaacgcgaac agtgttgtga tttggagtac atctcaatcg atcggaagtc gttgtggatc      1020
     acttcagact tatgtagata acacattggg tccgtatctt caattaacag accgaaattt      1080
     ggacaaatgt cgcatggaga gatgtgaagg gcgtggggaa tgctatttac cacgaccgaa      1140
     aacaaatcca gctatctata actttgcctg ccgctgtgaa cgtccatatt tcggaaaaag      1200
     ctgtgaatac cgtggccgtc gaatgggtgt atcaatgcca aaagcttctc aaactcctca      1260
     agtcattcca gatgtcactg cctacttctc aacatcttcc aatggaacta aaaaatataa      1320
     tgctccaaat cagttctatt caagaaccgg cggagacatt aaattagcaa ggaagttgta      1380
     ataataatag tgaacaaaat t                                                1401
//
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