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EBI DbfetchID AB244722; SV 1; linear; genomic DNA; STD; PRO; 2882 BP. XX AC AB244722; XX DT 01-APR-2006 (Rel. 87, Created) DT 01-APR-2006 (Rel. 87, Last updated, Version 1) XX DE Sphingobacterium sp. V-54 dex1, hbd genes for dextranase, DE alpha-1,3-polybranched dextran hydrogenase, complete and partial cds. XX KW . XX OS Sphingobacterium sp. V-54 OC Bacteria; Bacteroidetes; Sphingobacteria; Sphingobacteriales; OC Sphingobacteriaceae; Sphingobacterium. XX RN [1] RP 1-2882 RA Oguma T.; RT ; RL Submitted (16-DEC-2005) to the EMBL/GenBank/DDBJ databases. RL Tetsuya Oguma, Kikkoman Corporation; 399 Noda, Noda City, Chiba 278-0037, RL Japan (E-mail:toguma@mail.kikkoman.co.jp, Tel:81-4-7123-5520) XX RN [2] RA Ito H., Kawano T., Tochihara T., Mitoma T., Morimoto N., Watanabe K., RA Hamada S., Oguma T., Matsui H.; RT "A novel dextranase gene from Sphingobacterium sp. strain V-54"; RL Unpublished. XX FH Key Location/Qualifiers FH FT source 1..2882 FT /organism="Sphingobacterium sp. V-54" FT /strain="V-54" FT /mol_type="genomic DNA" FT /db_xref="taxon:362908" FT CDS 199..1578 FT /codon_start=1 FT /transl_table=11 FT /gene="dex1" FT /product="dextranase" FT /EC_number="3.2.1.11" FT /db_xref="GOA:Q1XGE4" FT /db_xref="InterPro:IPR000111" FT /db_xref="InterPro:IPR013785" FT /db_xref="InterPro:IPR017853" FT /db_xref="UniProtKB/TrEMBL:Q1XGE4" FT /protein_id="BAE92747.1" FT /translation="MRRFHQLATPLVFLNMLFMTACSKTPSNDITTKIIHPDSLQNPFV FT GPLYWSPYEYNFETDGYIPEDEWEKNINWIDNNLKSFGYKMVCIDGWGDDFKYNADGYR FT TTHSSKWKHDYAWWSDNLKGRGMTLGIYNNPLWVIKLAADAGVKIKGTNIPLSSIMKED FT EQATWFKWVQVDKPGAEEYVKGYIQYYADMGVRYLRVDFLSWFEDGKDRNMGTVGPVRP FT AAYYEKALRWMREACDKNGIFLSLVMPHLYNNGQVEQKYGHMIRVNDDVGDGKWWRWSD FT NERGIKRVGWSQYANGMDGLTYWSNISGRGKMILDADFLRINTFSNDHEKKSVISACFI FT SGGAVTIGDRYNSIDKNLWLYQNRELLALREDGFVGKPLTNDPKDPKSQIWKGQLTNGD FT WVIALFNRESNYQTRGLNFTDLSGSHWRVRDLWKHEDLGTMSSYFENIPPHGVTVLRLT FT K" FT CDS 1628..>2882 FT /codon_start=1 FT /transl_table=11 FT /gene="hbd" FT /product="alpha-1,3-polybranched dextran hydrogenase" FT /db_xref="InterPro:IPR019563" FT /db_xref="UniProtKB/TrEMBL:Q1XGE3" FT /protein_id="BAE92748.1" FT /translation="MMKKSIFLLFVVFCCNGIVARGQQIKSPNGRFELAFGLTKEGTPT FT YELKFKNNVVIKTSNLGLELKLKPDEELNLKGQTDSEIQIKKKSSLYSNFEISDSKTST FT FDETWQPVWGETKNVRNHYNELAVTLNQKQTERQIIIRFRLFDDGLGFRYEFPLQKNLN FT YFTIKEERSQFAMTGDHTAYWIPGDYDTQEYNYTTSKLSEIRGLMGSAYEGGNVSQTSF FT SPTGVQTSLMLKTNEGVYINLHEASCLNYSTMHLNLDDKNFVFESWLTPDSHGDKGKMQ FT APATSPWRTIIVSDDARDILASKMTYNLNEPSKIQNTSWIKPTKYVGVWWEMISGKSSW FT SYTNEFPSVQLGITDFSKAKPNGTHGATTANVKKYIDFAAKHGFEGVLVEGWNIGWEDW FT FGNDKDYVFDFVTPYPDFD" XX SQ Sequence 2882 BP; 954 A; 526 C; 641 G; 761 T; 0 other; gatcccaacc gcaaccggaa gctgggacgg agatttcttc atgccaccaa ccaatggaga 60 aggaacaacg ggaaaagatg caataattat cgctgagggt aaaatcgaca acaaatggaa 120 aattaccgaa gctggaacgt ataaaattac cttcaaccag ctttacgaaa caatttcaat 180 tgtcaaaaat taggccatat gagacgattt catcaactcg ctacaccact tgtatttttg 240 aacatgctgt ttatgacagc atgttcaaaa actccttcaa atgatataac cacaaagata 300 attcatccag acagtttgca aaatccgttc gtcggcccac tatattggag cccttacgaa 360 tataacttcg aaacggatgg ttatattcct gaagatgaat gggaaaagaa tatcaactgg 420 atcgacaaca acctaaaatc ttttggttac aagatggtct gtatcgacgg ctggggcgac 480 gactttaagt acaacgccga tggttatcgt actacccact cgtccaaatg gaagcacgac 540 tacgcctggt ggtccgataa cctgaaaggt agagggatga ctttgggaat atacaacaac 600 cccctatggg taatcaaatt ggctgctgat gctggtgtaa aaattaaagg aacgaatatt 660 ccactttcca gcatcatgaa agaagatgaa caggccacct ggtttaagtg ggtacaagtt 720 gacaaaccgg gagccgaaga atatgtcaaa ggatatattc aatactatgc ggatatgggt 780 gtgcgctatc tacgcgtaga ttttctttcc tggtttgaag atggaaaaga taggaatatg 840 gggacagtag gtccagtacg tccggcggcg tactatgaga aagctcttcg atggatgcgt 900 gaagcctgcg ataaaaatgg aattttctta agtctggtta tgccacatct ctataataat 960 gggcaggtag agcaaaaata cggacacatg atccgcgtca acgacgatgt tggagatggc 1020 aaatggtggc gatggagcga caatgaacgt ggaatcaaac gtgttggatg gtcacaatat 1080 gcaaatggca tggatggtct gacctattgg tctaacattt caggcagagg aaagatgata 1140 ctggatgctg attttcttcg gatcaatact ttttcaaatg atcatgaaaa gaagagtgtc 1200 atctcagcct gcttcatttc tggcggcgct gtcacaattg gagaccgtta taattccatc 1260 gataaaaatc tttggcttta ccaaaatagg gaactacttg ctttaagaga agatggattt 1320 gtcggaaaac ccttaaccaa cgatccgaaa gatccaaaaa gccagatctg gaaaggtcag 1380 ttgaccaatg gtgattgggt catagccctt tttaatagag agagtaacta tcaaaccaga 1440 ggattgaatt ttacagattt atctggcagc cattggcggg taagggattt atggaaacat 1500 gaagacctgg ggacaatgag ttcctatttt gagaatattc caccacatgg tgtaacagtt 1560 ttgcgattga cgaagtaatc caaagctcat aaaaatactg aattttaata tatatgctaa 1620 aatagaaatg atgaaaaaat caatttttct tttatttgtc gtcttttgct gtaacgggat 1680 cgtagcacgg gggcaacaga taaaatcgcc caatggaaga tttgaactgg cctttggatt 1740 gacaaaagaa ggtacgccaa cctacgaatt aaagtttaaa aacaacgtgg taatcaagac 1800 cagcaatctg ggattggaac tcaagctcaa accggatgaa gaattaaact taaagggaca 1860 aacggatagt gaaattcaga taaaaaagaa gagctcgctt tatagcaatt ttgaaatctc 1920 cgattcaaag accagcactt tcgatgaaac atggcaaccg gtatggggag aaactaaaaa 1980 tgtaagaaac cattataatg aactcgctgt cacattaaac caaaaacaaa cagagcgtca 2040 aattattatc cgttttcgtt tatttgatga tggtctcggt tttcggtatg aatttccact 2100 gcagaaaaac ctaaattact tcactattaa agaggaacgt agccagtttg ccatgactgg 2160 tgaccatacc gcttattgga ttcctggcga ttatgacacc caggaatata attataccac 2220 atctaaacta tctgaaataa ggggtttgat gggaagcgct tacgaaggtg gaaacgtctc 2280 tcaaacctcc ttctcgccaa cgggggtaca gacctcgttg atgctaaaaa ccaatgaagg 2340 tgtttacatc aatttacatg aagcaagctg tctgaattac tcgacgatgc acctcaattt 2400 ggatgacaaa aattttgttt ttgaatcttg gcttacacca gattcacatg gcgataaggg 2460 taaaatgcaa gcacccgcta cctcaccttg gagaacaatt atcgtaagtg atgatgcaag 2520 agatatattg gcgtctaaga tgacctataa tttgaatgag ccaagcaaaa tacaaaatac 2580 ttcctggata aagcctacaa aatatgtagg cgtgtggtgg gaaatgattt ccggtaagag 2640 tagttggtcc tatacaaatg aatttccgtc tgtccagttg ggaataacag atttcagtaa 2700 ggcaaaacca aatggtaccc atggcgcgac aacagcaaac gttaaaaagt atatagattt 2760 tgctgcgaag catggttttg agggtgtttt ggttgaagga tggaatatcg gatgggaaga 2820 ttggtttggt aatgataaag attatgtctt tgattttgtc acgccttatc ctgattttga 2880 tc 2882 // |
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