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EBI DbfetchID AB201709; SV 2; linear; genomic DNA; STD; PRO; 5753 BP. XX AC AB201709; XX DT 09-FEB-2005 (Rel. 82, Created) DT 24-JUN-2007 (Rel. 92, Last updated, Version 5) XX DE Campylobacter lari ureA, ureB, ureE, ureF, ureG, ureH genes, complete cds. XX KW . XX OS Campylobacter lari OC Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; OC Campylobacteraceae; Campylobacter. XX RN [1] RP 1-5753 RA Kakinuma Y., Usui K., Iida H., Matsuda M., Murayama O., Millar B.C., RA Moore J.E.; RT ; RL Submitted (07-FEB-2005) to the EMBL/GenBank/DDBJ databases. RL Motoo Matsuda, Azabu University, Laboratory of Molecular Biology, Graduate RL School of Environmental Health Sciences; Fuchinobe1-17-71, Sagamihara, RL Kanagawa 229-8501, Japan (E-mail:matsuda@azabu-u.ac.jp, Tel:81-42-769-1942, RL Fax:81-42-754-7661) XX RN [2] RX DOI; 10.1111/j.1365-2672.2006.03212.x RX PUBMED; 17584472. RA Kakinuma Y., Iida H., Sekizuka T., Usui K., Murayama O., Takamiya S., RA Millar B.C., Moore J.E., Matsuda M.; RT "Cloning, sequencing and characterization of a urease gene operon from RT urease-positive thermophilic Campylobacter (UPTC)"; RL J. Appl. Microbiol. 103(1):252-260(2007). XX FH Key Location/Qualifiers FH FT source 1..5753 FT /organism="Campylobacter lari" FT /strain="CF89-12" FT /mol_type="genomic DNA" FT /country="Japan" FT /note="Urease-positive thermophilic Campylobacter (UPTC)" FT /db_xref="taxon:201" FT CDS 483..1154 FT /codon_start=1 FT /transl_table=11 FT /gene="ureA" FT /product="urease A subunit" FT /db_xref="GOA:Q5FB24" FT /db_xref="InterPro:IPR002019" FT /db_xref="InterPro:IPR002026" FT /db_xref="InterPro:IPR008223" FT /db_xref="UniProtKB/Swiss-Prot:Q5FB24" FT /protein_id="BAD89501.1" FT /translation="MHFTQQQLQRLMLHYAGKIAKDRKEQKIKLNYNEALAYICYELME FT LARKNLSVSELMSIGKTLLTSEDVIDGVASMLDEIQIELPFEDGTKLVTIHEPIANDDK FT IKAGEIFLSSEFIVLNENKTSIEIKVSNKGDRPIQVGSHFHFFEVNRFLSFDREKAYGK FT RLNIASGTSVRFEPGEEKTVSLIEFGGLKKVLGFNNLCDDFINDENKTKALSKAKEKGF FT L" FT CDS 1151..2848 FT /codon_start=1 FT /transl_table=11 FT /gene="ureB" FT /product="urease B subunit" FT /db_xref="GOA:Q5FB23" FT /db_xref="InterPro:IPR005848" FT /db_xref="InterPro:IPR006680" FT /db_xref="InterPro:IPR011059" FT /db_xref="InterPro:IPR011612" FT /db_xref="InterPro:IPR017950" FT /db_xref="InterPro:IPR017951" FT /db_xref="InterPro:IPR017952" FT /db_xref="UniProtKB/Swiss-Prot:Q5FB23" FT /protein_id="BAD89502.1" FT /translation="MIKISKKDYVNMYGPTTNDRVRLADTDLILRVEKDYTLYGEEVKF FT GGGKNIRDGMAQSVSEGDFPDLVLTNALIVDYTGIYKADIGIKNGYIVGIGKAGNPDIQ FT DGVDPSLIIGTNTDIIGAEGLIVTAGGIDTHIHFISPTQIECALYSGVTTMIGGGIGPS FT EGTNATTCTSGAYHIHSMLKATQNYPMNFGFLGKGNSSNKNALKEQIIAGACGLKIHED FT WGATSSVIDASLNIADEMDIQVAIHTDTLNEAGFVEDTIKAINGRVIHTFHTEGAGGGH FT APDIIKMAGFENVLPASTNPTMPFTKNTIDEHLDMLMVCHHLDNKIKEDVEFADSRIRP FT ETIAAEDKLHDMGVFSIMSSDSQAMGRVGEVILRTWQSADKCKKEFGALKEDNDLDDNF FT RIKRYIAKYTINPAIAHGIDSYVGSIEVGKFADLVLWQPKFFGVKPKLILKGGLIVGAK FT IGDANASIPTPEPIIYEKMFGANLNENALHFVSKASLDANIPEKLSLKRKCVAVKNCRN FT ITKKDLKFNDKVQDIEVNPQTYEVKINGELISSKSVDSLALARKYFMI" FT CDS 2848..3315 FT /codon_start=1 FT /transl_table=11 FT /gene="ureE" FT /product="urease accessory protein" FT /db_xref="GOA:Q5FAP6" FT /db_xref="InterPro:IPR004029" FT /db_xref="InterPro:IPR007864" FT /db_xref="InterPro:IPR012406" FT /db_xref="UniProtKB/TrEMBL:Q5FAP6" FT /protein_id="BAD89503.1" FT /translation="MILLQNKIKHYDLNKECDFLELSWFDTFKKILRTTTLKGLDVAIK FT MPDNKGLNHNDCLYDEDFLILVKIKPEKVLKIHIENEYNLALISYQVGNMHLNLFYKDH FT KLLTLEQNSIIRFLEKFNIKYEKCEEILEPKYMLDMPSFIQVDPNFKLIKE" FT CDS 3318..3986 FT /codon_start=1 FT /transl_table=11 FT /gene="ureF" FT /product="urease accessory protein" FT /db_xref="GOA:Q5FAP5" FT /db_xref="InterPro:IPR002639" FT /db_xref="UniProtKB/TrEMBL:Q5FAP5" FT /protein_id="BAD89504.1" FT /translation="MNKLNFLLLQISDSSFPIGAFSHSFGLESYVNFAYIKNIEDAKKV FT LKTQLYSNILYFELLALKIAYENANDVKNLLVFQRKFLSSIVVKEQSQAYVFLAKRFVK FT NVNLYGLSNPLLNQYIKENQTPIYPFVYALFCKDNELDFMYESFLFALMSNFINILVKI FT VPLSQNEGQILLFQLQQDFQKVLSKLQNLTLKDWCENHNILNDYLGIKQQNLAFKIYIS FT " FT CDS 3997..4596 FT /codon_start=1 FT /transl_table=11 FT /gene="ureG" FT /product="urease accessory protein" FT /db_xref="GOA:Q5FB20" FT /db_xref="InterPro:IPR003495" FT /db_xref="InterPro:IPR004400" FT /db_xref="InterPro:IPR012202" FT /db_xref="UniProtKB/TrEMBL:Q5FB20" FT /protein_id="BAD89505.1" FT /translation="MVKIGIGGPVGSGKTALVLNLCQALKDELSLAVITNDIYTNEDAN FT FLIKQGVLEKERIIGVQTGGCPHTAIREDASCNLEAVELLQERFSDLDLIFIESGGDNL FT SMTFSPELVDFFIFVIDVAQGEKIPRKGGPAICRSDLMIINKIDLAPYVNASLKIMQED FT TLKMRGDRPFIMSNLQTKEGLDEIITWIKKYTLLKD" FT CDS 4598..5350 FT /codon_start=1 FT /transl_table=11 FT /gene="ureH" FT /product="urease accessory protein" FT /db_xref="GOA:Q18PG1" FT /db_xref="InterPro:IPR002669" FT /db_xref="UniProtKB/TrEMBL:Q18PG1" FT /protein_id="BAE96959.1" FT /translation="MFAQKSVFQLTLDTINEKTIIKNSFFTPPFKLMRNFYDKKLTSIY FT VLNSSAGIFKEDHLSFEIICKKSTNTAILTQSYEKVYDTKDSFASKNIDFTLEENASFF FT YMPKPLLLQENANFIQNTKVNLASFSRLVYVDFVIFGRVAMDEKFAFKNYESLTQIYRN FT DTLILNDKIKINPSYMKENELNFFANHTHYLSIYLFGYDEFYEELKASFDDINQLFYEG FT LCIKILSNESEKLLLLQDKLFKFCQNKI" XX SQ Sequence 5753 BP; 2175 A; 631 C; 956 G; 1991 T; 0 other; gatcatctaa aaatgggctt aattaaagga atgaaagatt ttccttttaa agtagatgag 60 gatgaaaaaa tagctgagtt tttatttcct attgtagatg gtataattca aacttgtata 120 gaaaataaac aaaatttaat cattgaagga atttatctta ttccaaaaaa actacaaaaa 180 tttcaaaatc attctgatgt taaaatactt tatatcattt tttcaaaaga atatattttg 240 caaaattatg cattaatcta tcaaaatgaa aatattatag aaaagcgttt atttagtgaa 300 aaagaagaaa taaacactct tattttaaat catcaaaaac ttaaaactca atgtgaaaat 360 ttaaatcttc cttttataga aattcaaaaa gactatgaaa ctgaattaaa aaatgcaata 420 gaattttttg cctaaaagca agtaaatagt tatataatat ctaaaaaatt ataaggatta 480 aaatgcattt tactcagcag caattgcaac gattaatgct tcattacgca gggaaaatag 540 ctaaagatag aaaagagcaa aaaataaaat taaattacaa tgaagcttta gcttatatat 600 gttatgaatt aatggaactt gcaaggaaaa atttaagtgt aagtgaattg atgagcatag 660 gaaaaacttt acttacaagt gaagatgtga ttgatggtgt tgcaagtatg cttgatgaaa 720 ttcaaataga acttcctttt gaagatggca caaaattagt tactatacat gaacctatag 780 caaatgatga taaaataaaa gctggagaga tatttttatc atcagaattt attgtgctta 840 atgaaaataa aacttctata gaaatcaaag taagcaataa aggtgatcgt cccatacaag 900 ttggctcgca ttttcatttc tttgaagtta atcgcttttt atcttttgat agagaaaaag 960 cttatggaaa aaggttaaat atcgcttcag gaacaagtgt gagatttgag ccaggtgaag 1020 aaaaaacagt aagtttaata gaatttggtg gtttaaaaaa ggttttaggt tttaataatc 1080 tttgtgatga ttttatcaat gatgaaaata aaactaaagc tttatcaaaa gcaaaagaga 1140 aaggatttct ttgattaaga ttagcaaaaa agactatgta aatatgtatg gtccaacaac 1200 taatgataga gtaagattag cagatacaga tttaatttta agagtagaaa aagattatac 1260 tttatatggt gaagaagtta aatttggtgg tggtaaaaat atcagagatg gtatggctca 1320 aagtgtgagt gagggagact ttccggattt agttttaact aatgctttga ttgttgatta 1380 taccggtatt tataaagcag atattgggat aaaaaatggc tatatagtag gtataggaaa 1440 agcaggtaat cctgatatac aagatggagt tgatcctagc ttaattatag gcacaaatac 1500 agatattatt ggtgcagaag gtttaatagt aactgcaggt ggtattgata ctcatataca 1560 ttttatttcc ccaactcaaa ttgaatgtgc cttatatagt ggtgttacta ctatgatagg 1620 aggtggtata ggaccaagtg agggaacaaa tgctacaact tgcacaagtg gggcttatca 1680 tatacattct atgttaaaag ctacgcaaaa ttaccctatg aattttggct ttttaggtaa 1740 aggaaattca agtaataaaa atgctttaaa agagcaaatt atagctggtg catgtggctt 1800 aaaaattcat gaagattggg gtgctacttc tagtgtgatt gatgctagtt taaatatagc 1860 tgatgaaatg gatatacaag tagctattca tacagatact ttaaacgaag caggttttgt 1920 agaagatacg attaaagcta ttaatggtag agttatccat acttttcaca ccgaaggtgc 1980 aggtggtggc catgctcctg atattattaa aatggcaggt tttgaaaatg ttttacctgc 2040 aagtactaat cctactatgc cttttactaa aaataccatt gatgagcatt tagatatgct 2100 tatggtttgt catcatttag ataataaaat caaagaagat gttgaatttg cagatagtag 2160 aattcgtcct gaaactatag cagcagaaga taaacttcat gatatgggtg tttttagcat 2220 tatgagtagt gattctcaag ctatgggacg cgtaggtgag gtgattttaa gaacatggca 2280 aagtgctgat aaatgcaaaa aagaatttgg tgccttaaaa gaagataatg atttagatga 2340 taatttccgc attaaacgct atatagcaaa atacactata aatcctgcta ttgcacatgg 2400 gattgatagt tatgttggtt ctattgaagt aggaaaattt gctgatttag tgctttggca 2460 acctaaattt tttggagtaa aaccaaagct tattttaaaa ggtggcttga tagtaggtgc 2520 aaaaataggc gatgctaatg cttctatccc aacgcctgag cctattatct atgaaaaaat 2580 gtttggagca aatttaaatg aaaatgcttt acattttgtt tctaaagctt ctttagatgc 2640 taatatacct gaaaaattaa gtttaaaaag aaaatgtgtt gcggtaaaaa attgtagaaa 2700 tatcactaaa aaagatttga aatttaatga taaagttcaa gatatagaag taaatccaca 2760 aacttatgaa gtaaaaataa atggtgagct tattagctct aagagtgttg attctttagc 2820 tttagctaga aaatatttta tgatttgatg attttacttc aaaataaaat aaagcattat 2880 gatttaaaca aagaatgcga ttttttagag cttagttggt ttgatacttt taaaaagata 2940 ttaagaacaa cgactttaaa aggactagat gtcgctataa aaatgcctga taataaaggt 3000 ttaaatcata atgattgttt atatgatgag gattttttga ttttagtgaa aatcaaacct 3060 gaaaaggttt taaaaattca catagaaaat gaatacaacc ttgctttaat aagttatcaa 3120 gtgggtaata tgcatttaaa tttattttat aaagatcata aacttcttac tttagaacaa 3180 aactctatta taaggttttt agaaaaattt aatataaaat acgaaaaatg tgaggaaatt 3240 ttagagccaa aatatatgct tgatatgcca agttttatcc aagttgatcc aaattttaaa 3300 cttattaaag aataaagatg aataaattaa attttttact tttacaaatt agtgattctt 3360 cttttcctat aggagctttt tcacattctt ttggtttaga atcttatgtg aattttgctt 3420 atataaaaaa tatagaagat gctaaaaaag ttttaaaaac tcagctttat tctaatattt 3480 tgtattttga acttttagct ttgaaaatag cttatgaaaa tgcaaatgat gtaaaaaatt 3540 tactagtctt tcaaagaaaa tttttatcaa gtatagttgt aaaagaacaa agtcaagctt 3600 atgttttttt agctaaacgc tttgtaaaaa atgtcaatct ttatggatta tcaaatcctt 3660 tattaaatca atacattaaa gaaaatcaaa ctcctattta tccttttgtg tatgctttat 3720 tttgtaaaga taatgagctt gattttatgt atgaaagttt tttatttgct ttaatgagta 3780 attttattaa tattcttgtg aaaattgtgc ctttatcgca aaatgaaggg cagattttac 3840 tttttcaact acagcaagat tttcaaaagg ttctttctaa attacaaaat ttaactttaa 3900 aagattggtg tgaaaatcac aatatcttaa atgattattt gggtataaaa cagcaaaatt 3960 tagcatttaa aatttatatt tcttaaaagg gttataatgg ttaaaatagg cataggtggt 4020 cctgtaggta gtggtaaaac agctttagta ttaaatttat gtcaagcttt aaaagatgag 4080 ctttctttgg ctgtgattac aaatgatatt tatacaaatg aagatgcaaa ttttttaatc 4140 aaacaaggcg ttcttgaaaa agaaagaatc ataggagtac aaactggagg ctgtcctcat 4200 acagccatta gagaagatgc ttcttgtaat cttgaagctg ttgaactttt acaagagcgt 4260 tttagtgatt tagatcttat ttttatagaa agtggcggag ataatttatc gatgactttt 4320 tcacctgaac ttgtggattt ttttatcttt gttatagatg ttgcccaagg agaaaaaatt 4380 ccacgcaaag gtggtcctgc tatttgtaga tctgatttaa tgattatcaa taaaatagac 4440 ttagctcctt atgtgaatgc ttctttaaaa atcatgcaag aagatacttt aaaaatgcgt 4500 ggagatagac cttttatcat gagtaatctt caaactaaag aaggtttaga tgaaatcatt 4560 acttggatta aaaaatacac acttttaaag gattgatttg tttgctcaaa agagtgtttt 4620 tcaacttaca ttagatacta tcaatgaaaa aactatcata aaaaattctt ttttcacacc 4680 tccttttaag cttatgagga atttttatga taaaaaatta actagtatat atgttttaaa 4740 ttctagtgct ggaattttca aagaggatca tttaagtttt gaaatcatat gtaagaaaag 4800 tacaaacacc gctatactca cacaaagtta tgaaaaggta tatgatacta aagattcttt 4860 tgcgagtaaa aatattgatt ttactcttga agaaaatgca agcttttttt atatgccaaa 4920 gccacttttg cttcaagaaa atgcaaattt tatacaaaat acaaaggtca atctagcttc 4980 tttttcaaga ttagtttatg ttgattttgt catttttggt agagtggcta tggatgaaaa 5040 atttgctttt aaaaattatg agagtttaac tcaaatttat agaaatgata ctttaatttt 5100 aaatgataaa attaaaatca atccttccta tatgaaagaa aatgaattaa atttttttgc 5160 aaatcatacg cattatttga gtatttatct ttttggatat gatgagtttt atgaagaatt 5220 aaaagcttca tttgacgata taaatcaact tttttatgag ggtttgtgta taaaaattct 5280 tagtaatgaa agtgaaaaat tacttttact tcaagataag ctttttaaat tttgtcaaaa 5340 taaaatataa aatattgtgg tattataaag ttttaaaaac aaactaagga ttataaatgc 5400 gatatggtga aaaagaaatc aaagaattta gtgtagaaaa tatggaagtt tggccaaatg 5460 atgctaaaaa tgattatgtg attaaaatca ctttgcctga atttatgtgt tgttgtccgc 5520 gtagtggata tcctgatttt gctacaattt acttagaata cattccaaat aaattagtag 5580 tagaacttaa agcaatcaaa ctttatatca atacctttat gtatagaaat gtttcgcatg 5640 aagtaagtat taatgaaatt tataatactt taaaagaaaa acttgatcca aaatggataa 5700 aagtagtagg cgattttaat cctcgtggta atgtgcatac tgtgattgaa tgc 5753 // |
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