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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AB074290; SV 1; linear; genomic DNA; STD; PRO; 948 BP.
XX
AC   AB074290;
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DT   16-NOV-2001 (Rel. 69, Created)
DT   16-NOV-2001 (Rel. 69, Last updated, Version 1)
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DE   Photobacterium damselae subsp. piscicida gene for capsular polysaccharide,
DE   complete cds.
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KW   .
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OS   Photobacterium damselae subsp. piscicida (causative agent of fish
OS   pasteurellosis)
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae;
OC   Photobacterium.
XX
RN   [1]
RP   1-948
RA   Rattanachai A., Hirono I., Aoki T.;
RT   ;
RL   Submitted (13-NOV-2001) to the EMBL/GenBank/DDBJ databases.
RL   Achara Rattanachai, Tokyo University of Fisheries, Aquatic Bioscience;
RL   4-5-7 Minato, Konan, Tokyo 108-8477, Japan (E-mail:aratta_1974@yahoo.com,
RL   Tel:81-3-5463-0689, Fax:81-3-5463-0689)
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RN   [2]
RA   Rattanachai A., Hirono I., Aoki T.;
RT   "LPS biosynthesis protein (Serratia marcescens) homolog";
RL   Unpublished.
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RN   [3]
RA   Rattanachai A., Hirono I., Aoki T.;
RT   "Molecular cloning and characterization of the region encoding for
RT   lipopolysaccharide biosynthesis in Pasteurella piscicida";
RL   Unpublished.
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FH   Key             Location/Qualifiers
FH
FT   source          1..948
FT                   /organism="Photobacterium damselae subsp. piscicida"
FT                   /mol_type="genomic DNA"
FT                   /note="synonym:Pasteurella piscicida"
FT                   /db_xref="taxon:38294"
FT   CDS             1..948
FT                   /codon_start=1
FT                   /transl_table=11
FT                   /product="capsular polysaccharide"
FT                   /note="capsular polysaccharide gene notably similar to
FT                   Streptococcus pneumoniae wciW"
FT                   /db_xref="InterPro:IPR008441"
FT                   /db_xref="UniProtKB/TrEMBL:Q8VW69"
FT                   /protein_id="BAB72030.1"
FT                   /translation="MGQLSRQIKEKLRQVICRFRSQPVLSAEIQSKGQKALLELRKKQP
FT                   LSEQENKVIWMYWDSGLDRAPEVVRLSHQSWCQFNPDYQVVLLSNANIEQYLDFDFNDI
FT                   FPMLSVKLGAAGKSDLLRLYLLNRYGGVWADATTFCVKPLSQWLDLSQTSFFCFREKHS
FT                   NDRNLVSWFLAAKAGDPIITDLLNASLDYLIQPRPYRLDIVGLKTTLQLAQGTQFISKH
FT                   HSGFALLNYLESKYAAPYFWLFYLFNEVVKLPHNQLAWQYIEQQHNLCAEMYEEITSFK
FT                   SSYVAKQTYREKYISGTLYQQRAEYISNLLNGKS"
XX
SQ   Sequence 948 BP; 298 A; 156 C; 191 G; 303 T; 0 other;
     atggggcagt taagtcgaca aattaaagaa aaattgcgtc aagtaatatg ccgatttcgc        60
     tcccagcctg ttttatctgc agagatacaa agtaaaggcc aaaaagcttt acttgaattg       120
     agaaaaaaac agccgttatc tgaacaggaa aacaaggtta tttggatgta ttgggactcg       180
     ggtctcgata gagcacctga agttgttcgc ctgagtcatc aaagttggtg tcaatttaat       240
     ccagattatc aagttgtttt actgagtaat gcaaatatag aacaatattt agattttgat       300
     tttaatgata tttttcctat gttgtcagta aagttagggg ctgcgggtaa gagtgatttg       360
     ttacgcttat atctgcttaa tcgctatggt ggtgtatggg cagatgcaac aacgttttgt       420
     gtcaagccac tttcacaatg gctagatctc tctcaaacta gcttcttctg cttcagagaa       480
     aagcattcta atgatcgtaa tttagtgtct tggtttttag ccgcaaaagc aggggatccg       540
     attattactg accttcttaa tgcgtcgcta gattacttaa ttcagccaag gccttatcgg       600
     ttagatattg ttggcttaaa aactacatta caattagcgc aaggaacaca atttatatca       660
     aagcatcact ctggctttgc tttattaaat tatcttgaaa gtaaatatgc ggccccttat       720
     ttttggctat tttatttatt taatgaggtt gttaagttgc ctcataatca gttggcttgg       780
     caatatatcg agcagcaaca taatttatgc gcagaaatgt atgaagagat aacaagcttt       840
     aaatcgtctt atgttgcgaa acaaacgtat cgagaaaaat acatcagtgg tacgttatat       900
     cagcaaagag cagaatacat atcaaatctt ctcaatggga aaagctag                    948
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