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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AB070926; SV 1; linear; genomic DNA; STD; PRO; 1351 BP.
XX
AC   AB070926;
XX
DT   05-NOV-2001 (Rel. 69, Created)
DT   14-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE   Shigella boydii alr gene for alanine racemase, complete cds.
XX
KW   .
XX
OS   Shigella boydii
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
OC   Enterobacteriaceae; Shigella.
XX
RN   [1]
RP   1-1351
RA   Yokoigawa K.;
RT   ;
RL   Submitted (31-AUG-2001) to the EMBL/GenBank/DDBJ databases.
RL   Kumio Yokoigawa, Nara Women's University, Department of Food Science and
RL   Nutrition; Kitauoya-Nishimachi, Nara 630-8506, Japan
RL   (E-mail:yokoigawa@cc.nara-wu.ac.jp, Tel:81-742-20-3460, Fax:81-742-20-3460)
XX
RN   [2]
RX   DOI; 10.1006/bbrc.2001.5817
RX   PUBMED; 11676496.
RA   Yokoigawa K., Hirasawa R., Ueno H., Okubo Y., Umesako S., Soda K.;
RT   "Gene cloning and characterization of alanine racemases from Shigella
RT   dysenteriae, Shigella boydii, Shigella flexneri, and Shigella sonnei";
RL   Biochem. Biophys. Res. Commun. 288(3):676-684(2001).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1351
FT                   /organism="Shigella boydii"
FT                   /serotype="3"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:621"
FT   RBS             174..178
FT                   /inference="non-experimental evidence, no additional
FT                   details recorded"
FT   CDS             185..1264
FT                   /codon_start=1
FT                   /transl_table=11
FT                   /gene="alr"
FT                   /product="alanine racemase"
FT                   /EC_number="5.1.1.1"
FT                   /db_xref="GOA:P0A6B6"
FT                   /db_xref="InterPro:IPR000821"
FT                   /db_xref="InterPro:IPR001608"
FT                   /db_xref="InterPro:IPR009006"
FT                   /db_xref="InterPro:IPR011079"
FT                   /db_xref="InterPro:IPR020622"
FT                   /db_xref="UniProtKB/Swiss-Prot:P0A6B6"
FT                   /protein_id="BAB71771.1"
FT                   /translation="MQAATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLET
FT                   ARTLPDADAFGVARLEEALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQ
FT                   LAALEEASLDEPVTVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARA
FT                   DEPKCGATEKQLAIFNTFCEGKPGQRSIAASGGILLWPQSHFDWVRPGIILYGVSPLED
FT                   RSTGADFGCQPVMSLTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRA
FT                   APSGTPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERIAEMTKV
FT                   SAYELITRLTSRVAMKYVD"
XX
SQ   Sequence 1351 BP; 319 A; 334 C; 380 G; 318 T; 0 other;
     gatttaaaag gcatcgcgga aattattatc ggtaaacaac gtaacggccc aatcgggacg        60
     gtacgcctga cctttaacgg tcaatggtcg cgcttcgaca actatgcggg gccgcagtac       120
     gacgacgaat aataattatt ttatgaatta ggtaattaaa gcaaacaatt atcaaggaac       180
     acaaatgcaa gcggcaactg ttgtgattaa ccgccgcgct ctgcgacaca acctgcaacg       240
     tcttcgtgaa ctggcacctg ccagtaaaat ggttgcggtg gtgaaagcga acgcttatgg       300
     tcacggtctt cttgagaccg cgcgaacgct ccccgatgct gacgcctttg gcgtagcccg       360
     tctcgaagaa gctctgcgac tgcgtgcggg gggaatcacc aaacctgtac tgttactcga       420
     aggctttttt gatgccagag atctgccgac gatttctgcg caacattttc ataccgccgt       480
     gcataacgaa gaacagctgg ctgcgctgga agaggctagc ttggacgagc cggttaccgt       540
     ctggatgaaa ctcgataccg gtatgcaccg tctgggcgta aggccggaac aggctgaggc       600
     gttttatcat cgcctgaccc agtgcaaaaa cgttcgtcag ccggtgaata tcgtcagcca       660
     ttttgcgcgc gcggatgaac caaaatgtgg cgcaaccgag aaacaactcg ctatctttaa       720
     taccttttgc gaaggcaaac ctggtcaacg ttccattgcc gcgtcgggtg gcattctgct       780
     gtggccacag tcgcattttg actgggtgcg cccgggcatc attctttatg gcgtctcgcc       840
     gctggaagat cgctccaccg gtgccgattt tggctgtcag ccagtgatgt cactaacctc       900
     cagcctgatt gccgtgcgtg agcataaagc cggagagcct gttggttatg gtggaacctg       960
     ggtaagcgaa cgtgataccc gtcttggcgt agtcgcgatg ggctatggcg atggttatcc      1020
     gcgcgccgcg ccgtccggta cgccagtgct ggtgaacggt cgcgaagtac cgattgtcgg      1080
     gcgcgtggcg atggatatga tctgcgtaga cttaggtcca caggcgcagg acaaagccgg      1140
     ggatccggtc attttatggg gcgaaggttt gcccgtagaa cgtatcgctg aaatgacgaa      1200
     agtaagcgct tacgaactta ttacgcgcct gacttcaagg gtcgcgatga aatacgtgga      1260
     ttaatcgttc tgtaatattt gattgtctgt gccggatgcg gcgtgaatgc cttatccggc      1320
     caataaaatc ctaaaaattc aataagttga t                                     1351
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